Wall clock time and date at job start Fri Apr 10 2020 18:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00270 * 2 1 4 4 H 1.48503 * 109.46583 * 269.99712 * 3 2 1 5 5 H 1.48496 * 109.47105 * 29.99870 * 3 2 1 6 6 H 1.48496 * 109.47061 * 150.00299 * 3 2 1 7 7 C 1.38956 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99811 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99688 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00015 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46708 * 180.02562 * 12 10 9 14 14 C 1.34781 * 119.99511 * 180.02562 * 13 12 10 15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.47473 * 179.97438 * 18 17 16 20 20 C 1.33875 * 122.76488 * 269.71158 * 19 18 17 21 21 O 1.21230 * 125.39200 * 359.97438 * 20 19 18 22 22 C 1.51315 * 109.20750 * 179.83865 * 20 19 18 23 23 C 1.54230 * 103.55426 * 0.38916 * 22 20 19 24 24 C 1.33875 * 122.75903 * 89.99982 * 19 18 17 25 25 O 1.21226 * 125.40090 * 359.97438 * 24 19 18 26 26 H 0.97003 * 119.99526 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99939 * 0.02562 * 9 7 2 28 28 H 1.08994 * 109.46995 * 60.00543 * 12 10 9 29 29 H 1.08994 * 109.46942 * 300.00312 * 12 10 9 30 30 H 0.97003 * 120.00113 * 0.02562 * 13 12 10 31 31 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 32 32 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 33 33 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 34 34 H 1.09002 * 109.47153 * 300.00008 * 18 17 16 35 35 H 1.08998 * 109.47533 * 59.99637 * 18 17 16 36 36 H 1.08998 * 110.79380 * 241.77795 * 22 20 19 37 37 H 1.09002 * 110.54273 * 118.87508 * 22 20 19 38 38 H 1.08995 * 110.60329 * 241.25892 * 23 22 20 39 39 H 1.08997 * 110.60287 * 118.29489 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0000 10 6 4.0537 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0020 12 6 5.5607 -2.3708 0.0011 13 7 6.0489 -3.7521 0.0017 14 6 7.3740 -3.9984 0.0023 15 8 8.1641 -3.0743 0.0019 16 7 7.8231 -5.2691 0.0023 17 6 9.2634 -5.5369 0.0036 18 6 9.5012 -7.0482 0.0040 19 7 10.9415 -7.3161 0.0047 20 6 11.6532 -7.4544 -1.1208 21 8 11.2091 -7.3781 -2.2462 22 6 13.1004 -7.7175 -0.7654 23 6 13.0997 -7.7172 0.7769 24 6 11.6533 -7.4483 1.1308 25 8 11.2095 -7.3651 2.2559 26 1 -0.4849 0.8401 0.0004 27 1 3.8648 -0.3634 -0.0004 28 1 5.9240 -1.8563 0.8906 29 1 5.9240 -1.8577 -0.8893 30 1 5.4184 -4.4893 0.0016 31 1 7.1928 -6.0063 0.0023 32 1 9.7154 -5.0979 -0.8859 33 1 9.7138 -5.0983 0.8941 34 1 9.0493 -7.4869 0.8937 35 1 9.0508 -7.4872 -0.8862 36 1 13.7432 -6.9252 -1.1490 37 1 13.4181 -8.6872 -1.1487 38 1 13.7422 -6.9248 1.1606 39 1 13.4146 -8.6875 1.1607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117469570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:25 Heat of formation + Delta-G solvation = -153.343010 kcal Electronic energy + Delta-G solvation = -24639.728927 eV Core-core repulsion = 20581.819016 eV Total energy + Delta-G solvation = -4057.909910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.89831 -41.29538 -40.18668 -39.67624 -37.22985 -36.53724 -36.23740 -35.35229 -34.12885 -33.82887 -30.52425 -28.84241 -27.09995 -26.25327 -24.44495 -23.31823 -22.16747 -21.48967 -20.73592 -20.49015 -19.57126 -18.41021 -17.96367 -17.55185 -17.51910 -17.29469 -17.04616 -16.70538 -16.12990 -15.93976 -15.58502 -15.42119 -15.30913 -15.15189 -14.91567 -14.86936 -14.59273 -14.33238 -14.02065 -13.72714 -13.53857 -13.44497 -12.98385 -12.73916 -12.45400 -12.08269 -12.00801 -11.76189 -11.58934 -11.53952 -11.10549 -11.00082 -10.67107 -10.55343 -10.33418 -9.95224 -8.46339 -6.08349 0.48704 1.15781 1.30922 1.33671 1.43656 1.67274 1.76100 1.77436 2.01346 2.19946 2.76881 3.09825 3.20935 3.22981 3.30100 3.58296 3.64620 3.79047 3.97661 4.15864 4.21447 4.29421 4.37778 4.41836 4.52526 4.69550 4.81302 4.93126 4.96610 5.22126 5.27032 5.47575 5.77113 5.82633 5.87310 6.29697 6.47722 6.70585 6.77004 6.91530 7.26968 7.41509 7.76773 8.69986 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.036153 B = 0.002013 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.308661 B =13903.027381 C =13946.855639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.614 6.614 12 C 0.138 3.862 13 N -0.724 5.724 14 C 0.708 3.292 15 O -0.629 6.629 16 N -0.730 5.730 17 C 0.137 3.863 18 C 0.090 3.910 19 N -0.577 5.577 20 C 0.519 3.481 21 O -0.521 6.521 22 C -0.141 4.141 23 C -0.141 4.141 24 C 0.519 3.481 25 O -0.521 6.521 26 H 0.281 0.719 27 H 0.392 0.608 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.411 0.589 31 H 0.414 0.586 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.822 -15.084 0.030 35.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.217 5.217 10 C 0.233 3.767 11 O -0.500 6.500 12 C 0.009 3.991 13 N -0.381 5.381 14 C 0.408 3.592 15 O -0.510 6.510 16 N -0.387 5.387 17 C 0.011 3.989 18 C -0.033 4.033 19 N -0.320 5.320 20 C 0.311 3.689 21 O -0.394 6.394 22 C -0.180 4.180 23 C -0.180 4.180 24 C 0.311 3.689 25 O -0.394 6.394 26 H 0.091 0.909 27 H 0.228 0.772 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.249 0.751 31 H 0.251 0.749 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 31.428 -14.750 0.031 34.717 hybrid contribution -1.350 0.491 0.002 1.436 sum 30.078 -14.259 0.032 33.286 Atomic orbital electron populations 1.69783 1.08008 1.29460 1.49231 1.26081 0.96461 1.02627 0.95723 0.85437 0.79561 0.77003 0.80078 1.18075 1.19797 1.15620 1.19029 0.80926 0.95283 1.50782 0.91813 1.41914 1.06147 1.07415 1.66250 1.20475 0.89974 0.83889 0.82333 1.90524 1.70768 1.32305 1.56413 1.20715 0.89303 0.84004 1.05060 1.44669 1.05355 1.09004 1.79109 1.15823 0.82055 0.83678 0.77683 1.90887 1.55818 1.44416 1.59911 1.44623 1.08093 1.05897 1.80108 1.21269 0.80212 0.95674 1.01757 1.21783 0.80530 0.94581 1.06360 1.46868 1.10649 1.63959 1.10525 1.21808 0.91501 0.72809 0.82750 1.90806 1.77780 1.48120 1.22722 1.22605 0.90496 1.09130 0.95804 1.22610 0.90511 1.09076 0.95815 1.21814 0.91493 0.72837 0.82744 1.90805 1.77768 1.48090 1.22763 0.90911 0.77199 0.88001 0.87915 0.75064 0.74900 0.92395 0.92412 0.87316 0.87315 0.83833 0.83340 0.83864 0.83315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.57 13.96 21.67 0.30 -54.27 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.96 38.40 27.74 68.60 1.90 40.30 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 7 C -0.33 -18.90 10.16 84.04 0.85 -18.05 16 8 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 9 N -0.58 -26.75 5.09 -306.97 -1.56 -28.31 16 10 C 0.45 19.60 7.85 87.66 0.69 20.29 16 11 O -0.61 -31.74 15.24 -3.08 -0.05 -31.79 16 12 C 0.14 4.62 6.15 85.63 0.53 5.15 16 13 N -0.72 -22.72 5.53 -482.30 -2.67 -25.38 16 14 C 0.71 21.86 8.57 179.05 1.53 23.40 16 15 O -0.63 -23.63 16.34 -3.98 -0.07 -23.70 16 16 N -0.73 -16.50 5.56 -478.53 -2.66 -19.16 16 17 C 0.14 2.85 6.00 86.38 0.52 3.37 16 18 C 0.09 1.35 5.67 86.38 0.49 1.83 16 19 N -0.58 -7.53 2.55 -756.66 -1.93 -9.46 16 20 C 0.52 6.22 8.08 87.99 0.71 6.93 16 21 O -0.52 -10.75 17.47 -2.87 -0.05 -10.80 16 22 C -0.14 -0.05 7.03 30.46 0.21 0.17 16 23 C -0.14 -0.05 7.03 30.46 0.21 0.17 16 24 C 0.52 6.22 8.08 87.99 0.71 6.93 16 25 O -0.52 -10.76 17.48 -2.86 -0.05 -10.81 16 26 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.39 15.28 5.76 -92.71 -0.53 14.75 16 28 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.41 12.65 7.45 -92.71 -0.69 11.96 16 31 H 0.41 6.94 8.49 -92.71 -0.79 6.15 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.49 7.83 -2.39 -0.02 1.47 16 35 H 0.11 1.49 7.82 -2.39 -0.02 1.47 16 36 H 0.14 -0.42 8.14 -2.39 -0.02 -0.43 16 37 H 0.15 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H 0.14 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.15 -0.63 8.14 -2.39 -0.02 -0.65 16 Total: -1.00 -87.66 345.99 -0.84 -88.49 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: -0.93 Total: 34.73 kcal Atomic # 6 Polarization: 43.23 SS G_CDS: 6.93 Total: 50.16 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -8.52 Total: -136.59 kcal Atomic # 8 Polarization: -76.89 SS G_CDS: -0.21 Total: -77.10 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.90 Total: 40.30 kcal Total: -87.66 -0.84 -88.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117469570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.848 kcal (2) G-P(sol) polarization free energy of solvation -87.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds