Wall clock time and date at job start Fri Apr 10 2020 18:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.88804 * 56.12043 * 9 7 2 11 11 C 1.55155 * 111.00270 * 180.02562 * 9 7 2 12 12 C 1.54324 * 102.94404 * 153.57793 * 11 9 7 13 13 N 1.47027 * 107.27091 * 337.80704 * 12 11 9 14 14 C 1.34778 * 125.64990 * 178.98957 * 13 12 11 15 15 O 1.21347 * 119.99674 * 179.97438 * 14 13 12 16 16 C 1.49449 * 119.99941 * 359.97438 * 14 13 12 17 17 O 1.21347 * 120.00385 * 359.97438 * 16 14 13 18 18 N 1.34772 * 119.99659 * 180.02562 * 16 14 13 19 19 C 1.47427 * 125.65097 * 359.68126 * 18 16 14 20 20 C 1.54691 * 104.94129 * 204.07784 * 19 18 16 21 21 C 1.55157 * 101.67802 * 323.27990 * 20 19 18 22 22 C 1.47031 * 125.64694 * 180.02562 * 18 16 14 23 23 H 1.09004 * 109.88255 * 59.48091 * 22 18 16 24 24 C 1.53001 * 109.87722 * 298.31616 * 22 18 16 25 25 O 1.42896 * 109.47297 * 66.45573 * 24 22 18 26 26 C 1.47430 * 108.70279 * 358.93843 * 13 12 11 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96700 * 113.99830 * 300.70013 * 10 9 7 29 29 H 1.08998 * 110.72048 * 271.93893 * 11 9 7 30 30 H 1.08994 * 110.72121 * 35.21418 * 11 9 7 31 31 H 1.08997 * 109.88791 * 97.22056 * 12 11 9 32 32 H 1.09000 * 109.88571 * 218.23394 * 12 11 9 33 33 H 1.08994 * 110.36673 * 323.01040 * 19 18 16 34 34 H 1.09003 * 110.36190 * 85.33385 * 19 18 16 35 35 H 1.09007 * 111.10447 * 205.11155 * 20 19 18 36 36 H 1.08997 * 110.84700 * 81.33686 * 20 19 18 37 37 H 1.08998 * 110.72044 * 276.96842 * 21 20 19 38 38 H 1.09002 * 110.86917 * 153.77308 * 21 20 19 39 39 H 1.09006 * 109.46553 * 186.45132 * 24 22 18 40 40 H 1.09000 * 109.47425 * 306.45150 * 24 22 18 41 41 H 0.96702 * 114.00154 * 179.97438 * 25 24 22 42 42 H 1.08996 * 110.36499 * 265.29551 * 26 13 12 43 43 H 1.08992 * 110.36640 * 142.96700 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.3513 -2.5680 -1.1086 11 6 2.2274 -3.7050 -0.0005 12 6 1.3981 -4.8212 0.6687 13 7 0.3470 -4.1679 1.4625 14 6 -0.5992 -4.8000 2.1848 15 8 -1.4202 -4.1563 2.8046 16 6 -0.6372 -6.2935 2.2224 17 8 0.1835 -6.9372 1.6023 18 7 -1.5837 -6.9255 2.9443 19 6 -2.6336 -6.2703 3.7455 20 6 -3.0301 -7.3156 4.8146 21 6 -2.9302 -8.6395 4.0116 22 6 -1.7358 -8.3826 3.0689 23 1 -0.8293 -8.8151 3.4925 24 6 -2.0159 -8.9957 1.6955 25 8 -0.8665 -8.8399 0.8608 26 6 0.5003 -2.7068 1.3385 27 1 -0.4850 0.8401 0.0004 28 1 -0.3092 -1.8619 -1.1233 29 1 2.4969 -3.9830 -1.0194 30 1 3.1174 -3.4806 0.5873 31 1 0.9463 -5.4555 -0.0939 32 1 2.0375 -5.4200 1.3174 33 1 -2.2423 -5.3708 4.2206 34 1 -3.4921 -6.0270 3.1194 35 1 -4.0476 -7.1489 5.1682 36 1 -2.3240 -7.3082 5.6450 37 1 -3.8422 -8.8139 3.4406 38 1 -2.7248 -9.4807 4.6737 39 1 -2.2406 -10.0562 1.8101 40 1 -2.8675 -8.4911 1.2391 41 1 -0.9728 -9.2069 -0.0275 42 1 1.0889 -2.3154 2.1681 43 1 -0.4765 -2.2245 1.3045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118246820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:40 Heat of formation + Delta-G solvation = -148.011968 kcal Electronic energy + Delta-G solvation = -27555.708283 eV Core-core repulsion = 23601.569888 eV Total energy + Delta-G solvation = -3954.138396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.49570 -38.99284 -37.32470 -37.07642 -36.16400 -34.23205 -32.15090 -31.62994 -30.36192 -30.15346 -27.88566 -25.98382 -25.23755 -24.09671 -22.44059 -21.74016 -20.36265 -19.58900 -18.64905 -17.26830 -17.20313 -16.92113 -16.66292 -16.11140 -15.37868 -15.12898 -14.84205 -14.51215 -14.38686 -14.03651 -13.88049 -13.36559 -13.07562 -12.97085 -12.87273 -12.62271 -12.38076 -12.07925 -11.84431 -11.58937 -11.52654 -11.46062 -11.39849 -11.02512 -10.93398 -10.80778 -10.58354 -10.48859 -10.45930 -10.16601 -9.96446 -9.37887 -8.87151 -8.65668 -8.58010 -8.35587 -7.81590 -6.29053 -4.38005 2.01933 2.64447 3.22670 3.28063 3.30290 3.76181 3.84604 4.04642 4.26330 4.34501 4.57744 4.75265 4.89164 4.99144 5.02487 5.12652 5.18730 5.30601 5.42490 5.47826 5.56087 5.68011 5.85896 5.88932 5.92157 5.94690 6.01637 6.12346 6.32738 6.41130 6.55507 6.77299 6.85836 6.91039 7.21016 7.33198 7.47553 7.70704 7.74377 7.95728 8.03836 8.20640 8.60098 8.65550 9.31514 9.46891 10.78560 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.003624 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.454507 B = 7723.424674 C = 8376.435911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.582 6.582 11 C -0.122 4.122 12 C 0.114 3.886 13 N -0.575 5.575 14 C 0.510 3.490 15 O -0.539 6.539 16 C 0.516 3.484 17 O -0.476 6.476 18 N -0.597 5.597 19 C 0.098 3.902 20 C -0.135 4.135 21 C -0.125 4.125 22 C 0.138 3.862 23 H 0.082 0.918 24 C 0.065 3.935 25 O -0.537 6.537 26 C 0.091 3.909 27 H 0.272 0.728 28 H 0.385 0.615 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.367 0.633 42 H 0.066 0.934 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 -16.245 6.828 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.160 4.160 12 C -0.009 4.009 13 N -0.306 5.306 14 C 0.293 3.707 15 O -0.418 6.418 16 C 0.299 3.701 17 O -0.347 6.347 18 N -0.335 5.335 19 C -0.025 4.025 20 C -0.173 4.173 21 C -0.163 4.163 22 C 0.035 3.965 23 H 0.100 0.900 24 C -0.015 4.015 25 O -0.340 6.340 26 C -0.030 4.030 27 H 0.082 0.918 28 H 0.236 0.764 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.213 0.787 42 H 0.084 0.916 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.705 -16.347 7.174 18.741 hybrid contribution -0.315 1.073 -0.291 1.156 sum -6.021 -15.273 6.883 17.802 Atomic orbital electron populations 1.69564 1.06067 1.28095 1.49829 1.25083 0.95036 0.99796 0.93269 0.86427 0.79500 0.81935 0.78841 1.21080 1.19996 1.19963 1.21476 0.93725 0.90034 1.52253 0.91409 1.19602 0.85830 0.91869 0.81818 1.86096 1.48664 1.55849 1.48583 1.22717 0.97899 0.94896 1.00478 1.22109 0.89006 0.95378 0.94419 1.48604 1.27876 1.09891 1.44278 1.19655 0.82108 0.87778 0.81203 1.90649 1.39179 1.67558 1.44460 1.20012 0.81472 0.88588 0.80017 1.90800 1.36716 1.66978 1.40235 1.48237 1.30507 1.06128 1.48599 1.22551 0.90691 0.96917 0.92306 1.22817 1.02590 0.94057 0.97854 1.22618 0.97320 0.98742 0.97625 1.21627 0.99248 0.81187 0.94470 0.89999 1.22552 0.89155 0.98255 0.91517 1.86955 1.36860 1.83328 1.26860 1.23481 1.02817 0.75623 1.01069 0.91837 0.76363 0.90557 0.90504 0.91146 0.91863 0.87959 0.91403 0.89589 0.90519 0.90296 0.89705 0.93259 0.93822 0.78727 0.91568 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.82 10.73 55.43 0.60 -23.23 16 2 C 0.07 1.85 5.31 -17.82 -0.09 1.75 16 3 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.03 8.25 -34.44 -0.28 -14.31 16 8 H 0.07 1.73 7.76 -52.49 -0.41 1.32 16 9 C 0.25 6.17 0.88 -89.62 -0.08 6.09 16 10 O -0.58 -15.26 13.16 -35.23 -0.46 -15.72 16 11 C -0.12 -2.57 6.13 -24.90 -0.15 -2.72 16 12 C 0.11 2.30 5.49 -3.06 -0.02 2.29 16 13 N -0.57 -12.68 3.33 -171.02 -0.57 -13.24 16 14 C 0.51 10.79 7.88 -11.58 -0.09 10.70 16 15 O -0.54 -11.97 14.04 5.50 0.08 -11.89 16 16 C 0.52 9.66 7.62 -11.59 -0.09 9.57 16 17 O -0.48 -9.44 11.40 -18.61 -0.21 -9.65 16 18 N -0.60 -8.95 3.07 -163.65 -0.50 -9.45 16 19 C 0.10 1.25 6.04 -2.65 -0.02 1.24 16 20 C -0.14 -1.15 7.07 -24.70 -0.17 -1.32 16 21 C -0.13 -0.96 6.48 -24.90 -0.16 -1.12 16 22 C 0.14 1.60 3.30 -66.95 -0.22 1.38 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 24 C 0.06 0.70 6.47 37.16 0.24 0.95 16 25 O -0.54 -7.39 10.33 -59.34 -0.61 -8.00 16 26 C 0.09 2.21 5.62 -2.52 -0.01 2.19 16 27 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.38 10.32 7.01 45.56 0.32 10.64 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.08 1.51 8.01 -51.93 -0.42 1.09 16 31 H 0.07 1.46 7.58 -51.93 -0.39 1.07 16 32 H 0.06 1.20 7.69 -51.93 -0.40 0.80 16 33 H 0.10 1.53 6.17 -51.93 -0.32 1.20 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.57 8.14 -51.92 -0.42 0.14 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.52 7.85 -51.93 -0.41 0.11 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.37 3.52 9.12 45.56 0.42 3.94 16 42 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 43 H 0.08 2.27 7.64 -51.93 -0.40 1.88 16 LS Contribution 343.78 15.07 5.18 5.18 Total: -1.00 -31.36 343.78 -7.62 -38.98 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -4.94 Total: 15.06 kcal Atomic # 6 Polarization: 17.83 SS G_CDS: -1.15 Total: 16.68 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -0.48 Total: -45.92 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -1.21 Total: -45.26 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.36 -7.62 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118246820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.033 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds