Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.88804 * 56.12043 * 9 7 2 11 11 C 1.55155 * 111.00270 * 180.02562 * 9 7 2 12 12 C 1.54324 * 102.94404 * 153.57793 * 11 9 7 13 13 N 1.47027 * 107.27091 * 337.80704 * 12 11 9 14 14 C 1.34778 * 125.64990 * 178.98957 * 13 12 11 15 15 O 1.21347 * 119.99674 * 179.97438 * 14 13 12 16 16 C 1.49449 * 119.99941 * 359.97438 * 14 13 12 17 17 O 1.21347 * 120.00385 * 359.97438 * 16 14 13 18 18 N 1.34772 * 119.99659 * 180.02562 * 16 14 13 19 19 C 1.47427 * 125.65097 * 359.68126 * 18 16 14 20 20 C 1.54691 * 104.94129 * 204.07784 * 19 18 16 21 21 C 1.55157 * 101.67802 * 323.27990 * 20 19 18 22 22 C 1.47031 * 125.64694 * 180.02562 * 18 16 14 23 23 H 1.09004 * 109.88255 * 59.48091 * 22 18 16 24 24 C 1.53001 * 109.87722 * 298.31616 * 22 18 16 25 25 O 1.42896 * 109.47297 * 66.45573 * 24 22 18 26 26 C 1.47430 * 108.70279 * 358.93843 * 13 12 11 27 27 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 28 28 H 0.96700 * 113.99830 * 300.70013 * 10 9 7 29 29 H 1.08998 * 110.72048 * 271.93893 * 11 9 7 30 30 H 1.08994 * 110.72121 * 35.21418 * 11 9 7 31 31 H 1.08997 * 109.88791 * 97.22056 * 12 11 9 32 32 H 1.09000 * 109.88571 * 218.23394 * 12 11 9 33 33 H 1.08994 * 110.36673 * 323.01040 * 19 18 16 34 34 H 1.09003 * 110.36190 * 85.33385 * 19 18 16 35 35 H 1.09007 * 111.10447 * 205.11155 * 20 19 18 36 36 H 1.08997 * 110.84700 * 81.33686 * 20 19 18 37 37 H 1.08998 * 110.72044 * 276.96842 * 21 20 19 38 38 H 1.09002 * 110.86917 * 153.77308 * 21 20 19 39 39 H 1.09006 * 109.46553 * 186.45132 * 24 22 18 40 40 H 1.09000 * 109.47425 * 306.45150 * 24 22 18 41 41 H 0.96702 * 114.00154 * 179.97438 * 25 24 22 42 42 H 1.08996 * 110.36499 * 265.29551 * 26 13 12 43 43 H 1.08992 * 110.36640 * 142.96700 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.3513 -2.5680 -1.1086 11 6 2.2274 -3.7050 -0.0005 12 6 1.3981 -4.8212 0.6687 13 7 0.3470 -4.1679 1.4625 14 6 -0.5992 -4.8000 2.1848 15 8 -1.4202 -4.1563 2.8046 16 6 -0.6372 -6.2935 2.2224 17 8 0.1835 -6.9372 1.6023 18 7 -1.5837 -6.9255 2.9443 19 6 -2.6336 -6.2703 3.7455 20 6 -3.0301 -7.3156 4.8146 21 6 -2.9302 -8.6395 4.0116 22 6 -1.7358 -8.3826 3.0689 23 1 -0.8293 -8.8151 3.4925 24 6 -2.0159 -8.9957 1.6955 25 8 -0.8665 -8.8399 0.8608 26 6 0.5003 -2.7068 1.3385 27 1 -0.4850 0.8401 0.0004 28 1 -0.3092 -1.8619 -1.1233 29 1 2.4969 -3.9830 -1.0194 30 1 3.1174 -3.4806 0.5873 31 1 0.9463 -5.4555 -0.0939 32 1 2.0375 -5.4200 1.3174 33 1 -2.2423 -5.3708 4.2206 34 1 -3.4921 -6.0270 3.1194 35 1 -4.0476 -7.1489 5.1682 36 1 -2.3240 -7.3082 5.6450 37 1 -3.8422 -8.8139 3.4406 38 1 -2.7248 -9.4807 4.6737 39 1 -2.2406 -10.0562 1.8101 40 1 -2.8675 -8.4911 1.2391 41 1 -0.9728 -9.2069 -0.0275 42 1 1.0889 -2.3154 2.1681 43 1 -0.4765 -2.2245 1.3045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118246820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = -172.525641 kcal Electronic energy + Delta-G solvation = -27556.771276 eV Core-core repulsion = 23601.569888 eV Total energy + Delta-G solvation = -3955.201388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.90005 -40.44210 -38.94216 -38.54448 -37.13189 -36.10713 -34.18031 -32.68990 -31.94989 -31.26046 -29.74395 -27.73356 -26.29498 -25.57869 -23.95839 -22.73172 -21.62205 -21.38407 -20.03317 -19.18291 -18.34750 -18.19047 -17.92498 -17.57128 -17.05750 -16.93263 -16.38900 -16.17562 -15.42410 -15.31244 -15.04694 -14.86104 -14.68913 -14.47788 -14.22556 -14.04305 -13.79862 -13.48240 -13.35841 -13.22889 -12.83251 -12.75952 -12.60466 -12.53439 -12.32682 -12.28611 -12.19066 -12.12771 -11.86168 -11.62786 -11.26231 -10.85269 -10.68357 -10.46641 -10.27272 -9.81894 -9.56096 -8.26971 -6.43753 0.45069 1.24658 1.45009 1.45968 1.53907 2.20380 2.35691 2.44961 2.98871 3.19290 3.26579 3.64468 3.76752 3.80009 4.06404 4.10515 4.14397 4.19316 4.29532 4.31122 4.43707 4.55700 4.60851 4.64162 4.72094 4.87673 4.91741 4.94774 5.01755 5.03708 5.09555 5.14792 5.28741 5.31080 5.34485 5.40800 5.73775 6.01454 6.17028 6.33485 6.60531 6.67936 6.95557 7.04076 7.28182 7.37256 8.79352 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025813 B = 0.003624 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.454507 B = 7723.424674 C = 8376.435911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.028 3.972 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.557 4.557 8 H 0.072 0.928 9 C 0.235 3.765 10 O -0.590 6.590 11 C -0.115 4.115 12 C 0.124 3.876 13 N -0.584 5.584 14 C 0.501 3.499 15 O -0.557 6.557 16 C 0.515 3.485 17 O -0.492 6.492 18 N -0.592 5.592 19 C 0.088 3.912 20 C -0.123 4.123 21 C -0.111 4.111 22 C 0.126 3.874 23 H 0.074 0.926 24 C 0.062 3.938 25 O -0.570 6.570 26 C 0.106 3.894 27 H 0.272 0.728 28 H 0.377 0.623 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.041 0.959 41 H 0.381 0.619 42 H 0.057 0.943 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 -18.040 7.784 20.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.173 4.173 3 Si 0.793 3.207 4 H -0.209 1.209 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.595 4.595 8 H 0.090 0.910 9 C 0.194 3.806 10 O -0.399 6.399 11 C -0.153 4.153 12 C 0.002 3.998 13 N -0.316 5.316 14 C 0.284 3.716 15 O -0.437 6.437 16 C 0.297 3.703 17 O -0.366 6.366 18 N -0.328 5.328 19 C -0.034 4.034 20 C -0.161 4.161 21 C -0.148 4.148 22 C 0.024 3.976 23 H 0.092 0.908 24 C -0.017 4.017 25 O -0.376 6.376 26 C -0.017 4.017 27 H 0.081 0.919 28 H 0.228 0.772 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.229 0.771 42 H 0.076 0.924 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.011 -18.191 8.146 20.818 hybrid contribution -0.306 1.601 -0.557 1.723 sum -6.317 -16.590 7.589 19.306 Atomic orbital electron populations 1.69672 1.07246 1.28723 1.50107 1.25840 0.95777 1.02887 0.92806 0.85447 0.78259 0.78007 0.78959 1.20939 1.19396 1.19524 1.21776 0.94099 0.90975 1.52689 0.91026 1.19841 0.86207 0.93200 0.81357 1.86087 1.48789 1.55555 1.49469 1.22727 0.97673 0.93409 1.01454 1.22073 0.88548 0.94894 0.94293 1.48664 1.28866 1.09030 1.45020 1.20375 0.81370 0.89426 0.80385 1.90633 1.39637 1.68511 1.44920 1.19473 0.82652 0.87098 0.81091 1.90785 1.37767 1.66597 1.41422 1.48368 1.29322 1.08126 1.46987 1.22692 0.89796 0.97583 0.93308 1.22804 1.04107 0.92750 0.96410 1.22673 0.96162 0.98977 0.97024 1.22070 1.00894 0.78535 0.96093 0.90802 1.22699 0.88148 1.00289 0.90525 1.86902 1.38450 1.83985 1.28238 1.23077 1.00686 0.77103 1.00792 0.91853 0.77187 0.89720 0.88913 0.91636 0.90206 0.90678 0.91504 0.86880 0.90191 0.88451 0.86747 0.89646 0.94071 0.77110 0.92428 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.91 10.73 21.45 0.23 -49.68 16 2 C 0.03 1.44 5.31 84.66 0.45 1.89 16 3 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.56 -29.36 8.25 25.60 0.21 -29.15 16 8 H 0.07 3.63 7.76 -2.91 -0.02 3.60 16 9 C 0.23 11.80 0.88 -10.15 -0.01 11.79 16 10 O -0.59 -31.74 13.16 -148.98 -1.96 -33.70 16 11 C -0.11 -4.80 6.13 31.78 0.19 -4.61 16 12 C 0.12 5.03 5.49 86.73 0.48 5.51 16 13 N -0.58 -26.40 3.33 -813.35 -2.71 -29.11 16 14 C 0.50 21.81 7.88 87.27 0.69 22.49 16 15 O -0.56 -25.72 14.04 -3.24 -0.05 -25.77 16 16 C 0.52 19.41 7.62 87.27 0.67 20.08 16 17 O -0.49 -19.49 11.40 19.82 0.23 -19.26 16 18 N -0.59 -17.34 3.07 -790.04 -2.42 -19.76 16 19 C 0.09 2.19 6.04 86.78 0.52 2.72 16 20 C -0.12 -1.72 7.07 31.91 0.23 -1.50 16 21 C -0.11 -1.25 6.48 31.78 0.21 -1.05 16 22 C 0.13 2.64 3.30 45.34 0.15 2.79 16 23 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 24 C 0.06 1.21 6.47 71.98 0.47 1.68 16 25 O -0.57 -15.06 10.33 -125.93 -1.30 -16.37 16 26 C 0.11 5.31 5.62 86.86 0.49 5.80 16 27 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.38 21.07 7.01 -74.06 -0.52 20.55 16 29 H 0.08 3.37 8.14 -2.39 -0.02 3.36 16 30 H 0.09 3.55 8.01 -2.39 -0.02 3.53 16 31 H 0.07 2.72 7.58 -2.39 -0.02 2.71 16 32 H 0.08 2.98 7.69 -2.39 -0.02 2.96 16 33 H 0.07 2.29 6.17 -2.39 -0.01 2.28 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 0.81 7.85 -2.39 -0.02 0.79 16 38 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.38 6.97 9.12 -74.06 -0.68 6.30 16 42 H 0.06 2.93 8.03 -2.39 -0.02 2.91 16 43 H 0.05 2.94 7.64 -2.39 -0.02 2.92 16 Total: -1.00 -69.50 343.78 -1.37 -70.86 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -0.15 Total: 40.64 kcal Atomic # 6 Polarization: 33.71 SS G_CDS: 4.74 Total: 38.44 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -4.90 Total: -98.54 kcal Atomic # 8 Polarization: -92.02 SS G_CDS: -3.08 Total: -95.10 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -69.50 -1.37 -70.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118246820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.662 kcal (2) G-P(sol) polarization free energy of solvation -69.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds