Wall clock time and date at job start Fri Apr 10 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00163 * 2 1 4 4 C 1.53004 * 113.28417 * 313.07143 * 3 2 1 5 5 C 1.53494 * 114.20520 * 180.02562 * 3 2 1 6 6 N 1.47068 * 87.98362 * 220.34651 * 5 3 2 7 7 C 1.34784 * 136.05681 * 207.08847 * 6 5 3 8 8 O 1.21353 * 119.99769 * 359.97438 * 7 6 5 9 9 C 1.49442 * 119.99866 * 180.02562 * 7 6 5 10 10 O 1.21353 * 120.00365 * 359.97438 * 9 7 6 11 11 N 1.34784 * 119.99866 * 179.97438 * 9 7 6 12 12 C 1.47014 * 125.64965 * 359.96880 * 11 9 7 13 13 C 1.54327 * 107.27187 * 178.98958 * 12 11 9 14 14 C 1.55149 * 102.94214 * 337.80814 * 13 12 11 15 15 O 1.42903 * 111.00594 * 277.43081 * 14 13 12 16 16 C 1.50694 * 111.00456 * 153.61700 * 14 13 12 17 17 H 1.07991 * 120.00193 * 3.17397 * 16 14 13 18 18 C 1.37884 * 119.99946 * 183.18304 * 16 14 13 19 19 N 1.31508 * 119.99961 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00010 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47073 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47251 * 119.99288 * 20 18 16 23 23 H 1.48497 * 109.47495 * 239.99680 * 20 18 16 24 24 C 1.47419 * 125.64596 * 180.02562 * 11 9 7 25 25 C 1.47059 * 87.88386 * 27.34072 * 6 5 3 26 26 H 1.09002 * 109.46388 * 299.99644 * 1 2 3 27 27 H 1.09001 * 109.47191 * 59.99583 * 1 2 3 28 28 H 1.08997 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46996 * 286.93160 * 4 3 2 30 30 H 1.09002 * 109.46778 * 46.92874 * 4 3 2 31 31 H 1.08989 * 109.46996 * 166.93503 * 4 3 2 32 32 H 1.08998 * 113.46887 * 105.56672 * 5 3 2 33 33 H 1.08996 * 113.46984 * 335.12808 * 5 3 2 34 34 H 1.08999 * 109.88292 * 59.56755 * 12 11 9 35 35 H 1.08998 * 110.01176 * 298.48101 * 12 11 9 36 36 H 1.09002 * 110.71297 * 219.44414 * 13 12 11 37 37 H 1.09000 * 110.86709 * 96.24207 * 13 12 11 38 38 H 0.96700 * 114.00311 * 180.02562 * 15 14 13 39 39 H 0.97001 * 119.99988 * 180.02562 * 19 18 16 40 40 H 1.09009 * 110.36844 * 85.24321 * 24 11 9 41 41 H 1.09002 * 110.37005 * 322.91821 * 24 11 9 42 42 H 1.09003 * 113.46461 * 87.43903 * 25 6 5 43 43 H 1.09005 * 113.46839 * 217.87431 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.3795 2.2483 -1.0267 5 6 3.5452 1.3109 -0.0006 6 7 3.4899 2.4307 0.9511 7 6 4.2844 3.4707 1.2733 8 8 5.3420 3.6269 0.6991 9 6 3.8634 4.4308 2.3383 10 8 2.8059 4.2744 2.9128 11 7 4.6581 5.4705 2.6608 12 6 5.9589 5.7770 2.0482 13 6 6.4866 7.0656 2.7136 14 6 5.1950 7.7270 3.2627 15 8 4.5234 8.4659 2.2404 16 6 5.5002 8.6057 4.4483 17 1 6.5220 8.7436 4.7694 18 6 4.4748 9.2337 5.1232 19 7 3.2305 9.0661 4.7319 20 14 4.8531 10.3224 6.5932 21 1 6.3193 10.3452 6.8280 22 1 4.3729 11.7016 6.3244 23 1 4.1680 9.7854 7.7963 24 6 4.3674 6.4882 3.6870 25 6 2.1892 1.9126 1.4011 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7002 1.9618 -2.0283 30 1 0.2935 2.1834 -0.9604 31 1 1.6956 3.2713 -0.8228 32 1 3.9780 1.5809 -0.9639 33 1 3.9827 0.4053 0.4195 34 1 5.8359 5.9364 0.9770 35 1 6.6559 4.9574 2.2230 36 1 6.9673 7.7104 1.9778 37 1 7.1743 6.8297 3.5256 38 1 3.7104 8.8976 2.5367 39 1 2.5092 9.5081 5.2065 40 1 4.6851 6.1380 4.6692 41 1 3.3038 6.7268 3.6942 42 1 2.2692 1.1656 2.1909 43 1 1.4666 2.6953 1.6322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118249167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:43 Heat of formation + Delta-G solvation = -103.771919 kcal Electronic energy + Delta-G solvation = -26997.656886 eV Core-core repulsion = 23045.436883 eV Total energy + Delta-G solvation = -3952.220003 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08722 -39.65176 -38.09109 -37.17482 -36.58292 -34.28810 -32.23132 -30.81539 -30.24216 -28.37096 -27.92172 -26.83540 -26.35082 -25.50274 -23.41535 -21.67793 -20.11433 -19.64388 -18.66535 -17.47879 -17.26845 -16.89922 -16.65718 -15.80704 -15.63150 -15.44000 -15.19481 -14.94213 -14.53263 -14.29413 -13.70893 -13.57160 -13.43988 -13.05276 -13.00713 -12.82655 -12.54684 -12.33410 -12.29305 -12.03577 -11.72159 -11.67490 -11.54792 -11.09961 -11.08493 -10.84218 -10.73409 -10.57918 -10.48947 -10.22111 -9.94632 -9.40310 -9.12600 -8.94040 -8.72868 -8.44595 -7.90807 -6.33547 -4.43158 1.75554 2.26043 3.16984 3.26203 3.29796 3.34956 3.55099 3.65080 3.97926 4.22400 4.32847 4.53905 4.69614 4.94127 5.01928 5.10352 5.18156 5.26108 5.32118 5.35661 5.45552 5.47402 5.49645 5.56934 5.66459 5.78146 5.80728 5.84204 6.04128 6.28998 6.49669 6.71992 6.77807 6.81924 6.82820 7.16644 7.28550 7.40217 7.69505 7.71511 7.95614 8.01750 8.44000 8.61638 9.26431 9.37665 10.73594 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.003189 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.148152 B = 8778.174616 C = 9332.251215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.366 6.366 3 C 0.069 3.931 4 C -0.157 4.157 5 C 0.122 3.878 6 N -0.621 5.621 7 C 0.543 3.457 8 O -0.513 6.513 9 C 0.513 3.487 10 O -0.534 6.534 11 N -0.574 5.574 12 C 0.111 3.889 13 C -0.122 4.122 14 C 0.249 3.751 15 O -0.582 6.582 16 C -0.536 4.536 17 H 0.069 0.931 18 C 0.070 3.930 19 N -0.895 5.895 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 C 0.093 3.907 25 C 0.088 3.912 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.384 0.616 39 H 0.271 0.729 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 -14.870 -8.635 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.283 6.283 3 C 0.028 3.972 4 C -0.214 4.214 5 C 0.000 4.000 6 N -0.359 5.359 7 C 0.328 3.672 8 O -0.388 6.388 9 C 0.295 3.705 10 O -0.412 6.412 11 N -0.306 5.306 12 C -0.012 4.012 13 C -0.160 4.160 14 C 0.208 3.792 15 O -0.391 6.391 16 C -0.575 4.575 17 H 0.088 0.912 18 C -0.133 4.133 19 N -0.534 5.534 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.028 4.028 25 C -0.036 4.036 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.235 0.765 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.572 -15.040 -8.911 17.843 hybrid contribution -0.583 0.848 1.277 1.640 sum -4.155 -14.192 -7.634 16.642 Atomic orbital electron populations 1.22832 0.80652 1.02907 1.00691 1.87930 1.20242 1.25428 1.94742 1.23209 0.93981 0.84473 0.95531 1.21990 1.01446 0.99606 0.98379 1.23040 0.93370 0.89288 0.94313 1.48805 1.22552 1.24663 1.39930 1.19988 0.82839 0.80737 0.83588 1.90744 1.21923 1.73312 1.52805 1.19365 0.84760 0.82214 0.84150 1.90704 1.22721 1.73895 1.53894 1.48633 1.19934 1.24525 1.37479 1.22143 0.83524 0.97655 0.97874 1.22715 0.98556 0.94472 1.00207 1.19626 0.86566 0.86917 0.86117 1.86103 1.43515 1.69900 1.39624 1.21526 0.94190 1.28923 1.12819 0.91244 1.25105 0.94857 0.95868 0.97508 1.69653 0.99041 1.43387 1.41283 0.86319 0.78713 0.80005 0.81704 1.19528 1.20712 1.20754 1.23493 1.03495 0.87101 0.88691 1.23778 0.84678 0.98223 0.96872 0.93502 0.93303 0.89398 0.90912 0.90960 0.90516 0.89278 0.88500 0.91180 0.91765 0.90477 0.90336 0.76511 0.91938 0.91448 0.89319 0.88778 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.36 101.05 1.05 1.22 16 2 O -0.37 -3.51 10.71 -35.23 -0.38 -3.89 16 3 C 0.07 0.69 1.56 -89.97 -0.14 0.55 16 4 C -0.16 -1.41 8.97 37.16 0.33 -1.08 16 5 C 0.12 1.35 8.04 -8.52 -0.07 1.28 16 6 N -0.62 -9.04 3.50 -185.59 -0.65 -9.69 16 7 C 0.54 9.83 8.11 -11.59 -0.09 9.74 16 8 O -0.51 -9.90 14.90 5.49 0.08 -9.82 16 9 C 0.51 10.62 7.91 -11.59 -0.09 10.53 16 10 O -0.53 -11.76 15.45 5.49 0.08 -11.68 16 11 N -0.57 -12.37 3.33 -171.03 -0.57 -12.94 16 12 C 0.11 2.18 5.49 -3.07 -0.02 2.16 16 13 C -0.12 -2.49 6.13 -24.90 -0.15 -2.65 16 14 C 0.25 6.01 0.89 -89.63 -0.08 5.93 16 15 O -0.58 -14.87 13.19 -35.23 -0.46 -15.33 16 16 C -0.54 -13.74 8.26 -34.44 -0.28 -14.03 16 17 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 18 C 0.07 1.78 5.27 -17.82 -0.09 1.69 16 19 N -0.89 -23.36 10.68 55.43 0.59 -22.77 16 20 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.09 2.21 5.51 -2.53 -0.01 2.20 16 25 C 0.09 1.08 7.03 -8.39 -0.06 1.02 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.29 6.36 -51.93 -0.33 -0.04 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.54 6.12 -51.93 -0.32 0.22 16 31 H 0.08 0.83 7.94 -51.94 -0.41 0.41 16 32 H 0.09 0.93 8.12 -51.93 -0.42 0.50 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.40 7.58 -51.93 -0.39 1.00 16 35 H 0.06 1.17 7.69 -51.93 -0.40 0.77 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.08 1.50 8.02 -51.93 -0.42 1.08 16 38 H 0.38 10.03 7.18 45.56 0.33 10.35 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.07 1.63 8.03 -51.92 -0.42 1.21 16 41 H 0.09 2.33 7.48 -51.93 -0.39 1.95 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.09 1.27 7.36 -51.93 -0.38 0.88 16 LS Contribution 352.93 15.07 5.32 5.32 Total: -1.00 -29.60 352.93 -6.35 -35.95 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.63 Total: 11.29 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: 0.29 Total: 18.57 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.63 Total: -45.40 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.68 Total: -40.72 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.60 -6.35 -35.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118249167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.822 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds