Wall clock time and date at job start Fri Apr 10 2020 18:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00163 * 2 1 4 4 C 1.53004 * 113.28417 * 313.07143 * 3 2 1 5 5 C 1.53494 * 114.20520 * 180.02562 * 3 2 1 6 6 N 1.47068 * 87.98362 * 220.34651 * 5 3 2 7 7 C 1.34784 * 136.05681 * 207.08847 * 6 5 3 8 8 O 1.21353 * 119.99769 * 359.97438 * 7 6 5 9 9 C 1.49442 * 119.99866 * 180.02562 * 7 6 5 10 10 O 1.21353 * 120.00365 * 359.97438 * 9 7 6 11 11 N 1.34784 * 119.99866 * 179.97438 * 9 7 6 12 12 C 1.47014 * 125.64965 * 359.96880 * 11 9 7 13 13 C 1.54327 * 107.27187 * 178.98958 * 12 11 9 14 14 C 1.55149 * 102.94214 * 337.80814 * 13 12 11 15 15 O 1.42903 * 111.00594 * 277.43081 * 14 13 12 16 16 C 1.50694 * 111.00456 * 153.61700 * 14 13 12 17 17 H 1.07991 * 120.00193 * 3.17397 * 16 14 13 18 18 C 1.37884 * 119.99946 * 183.18304 * 16 14 13 19 19 N 1.31508 * 119.99961 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00010 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47073 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47251 * 119.99288 * 20 18 16 23 23 H 1.48497 * 109.47495 * 239.99680 * 20 18 16 24 24 C 1.47419 * 125.64596 * 180.02562 * 11 9 7 25 25 C 1.47059 * 87.88386 * 27.34072 * 6 5 3 26 26 H 1.09002 * 109.46388 * 299.99644 * 1 2 3 27 27 H 1.09001 * 109.47191 * 59.99583 * 1 2 3 28 28 H 1.08997 * 109.47022 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46996 * 286.93160 * 4 3 2 30 30 H 1.09002 * 109.46778 * 46.92874 * 4 3 2 31 31 H 1.08989 * 109.46996 * 166.93503 * 4 3 2 32 32 H 1.08998 * 113.46887 * 105.56672 * 5 3 2 33 33 H 1.08996 * 113.46984 * 335.12808 * 5 3 2 34 34 H 1.08999 * 109.88292 * 59.56755 * 12 11 9 35 35 H 1.08998 * 110.01176 * 298.48101 * 12 11 9 36 36 H 1.09002 * 110.71297 * 219.44414 * 13 12 11 37 37 H 1.09000 * 110.86709 * 96.24207 * 13 12 11 38 38 H 0.96700 * 114.00311 * 180.02562 * 15 14 13 39 39 H 0.97001 * 119.99988 * 180.02562 * 19 18 16 40 40 H 1.09009 * 110.36844 * 85.24321 * 24 11 9 41 41 H 1.09002 * 110.37005 * 322.91821 * 24 11 9 42 42 H 1.09003 * 113.46461 * 87.43903 * 25 6 5 43 43 H 1.09005 * 113.46839 * 217.87431 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.3795 2.2483 -1.0267 5 6 3.5452 1.3109 -0.0006 6 7 3.4899 2.4307 0.9511 7 6 4.2844 3.4707 1.2733 8 8 5.3420 3.6269 0.6991 9 6 3.8634 4.4308 2.3383 10 8 2.8059 4.2744 2.9128 11 7 4.6581 5.4705 2.6608 12 6 5.9589 5.7770 2.0482 13 6 6.4866 7.0656 2.7136 14 6 5.1950 7.7270 3.2627 15 8 4.5234 8.4659 2.2404 16 6 5.5002 8.6057 4.4483 17 1 6.5220 8.7436 4.7694 18 6 4.4748 9.2337 5.1232 19 7 3.2305 9.0661 4.7319 20 14 4.8531 10.3224 6.5932 21 1 6.3193 10.3452 6.8280 22 1 4.3729 11.7016 6.3244 23 1 4.1680 9.7854 7.7963 24 6 4.3674 6.4882 3.6870 25 6 2.1892 1.9126 1.4011 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.7002 1.9618 -2.0283 30 1 0.2935 2.1834 -0.9604 31 1 1.6956 3.2713 -0.8228 32 1 3.9780 1.5809 -0.9639 33 1 3.9827 0.4053 0.4195 34 1 5.8359 5.9364 0.9770 35 1 6.6559 4.9574 2.2230 36 1 6.9673 7.7104 1.9778 37 1 7.1743 6.8297 3.5256 38 1 3.7104 8.8976 2.5367 39 1 2.5092 9.5081 5.2065 40 1 4.6851 6.1380 4.6692 41 1 3.3038 6.7268 3.6942 42 1 2.2692 1.1656 2.1909 43 1 1.4666 2.6953 1.6322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118249167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:42 Heat of formation + Delta-G solvation = -126.436997 kcal Electronic energy + Delta-G solvation = -26998.639718 eV Core-core repulsion = 23045.436883 eV Total energy + Delta-G solvation = -3953.202835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.25498 -41.07948 -39.51516 -38.88163 -37.52564 -36.12051 -34.21571 -31.99265 -31.79967 -29.78063 -29.21026 -27.81596 -27.45733 -26.98081 -25.01191 -23.14611 -21.56934 -21.10834 -19.90729 -19.20168 -18.60348 -18.35477 -17.90579 -17.15129 -17.09037 -16.86758 -16.41266 -16.21564 -16.05704 -15.69274 -14.96252 -14.83026 -14.72419 -14.58663 -14.42168 -14.38301 -13.92738 -13.55429 -13.36943 -13.33743 -13.11232 -12.95424 -12.87473 -12.69028 -12.55476 -12.35240 -12.30066 -12.20178 -12.13872 -11.57456 -11.24540 -10.89508 -10.68249 -10.52317 -10.37475 -10.07388 -9.66244 -8.27591 -6.44571 0.24764 0.95444 1.41993 1.45698 1.56405 2.01131 2.15995 2.38486 2.64753 2.97565 2.99814 3.15166 3.52631 3.74398 3.85430 4.04375 4.11227 4.18610 4.28736 4.39913 4.42936 4.50324 4.54737 4.61822 4.63708 4.66125 4.70129 4.71097 4.76576 4.91883 4.93331 5.03405 5.12185 5.12923 5.31263 5.41407 5.73161 5.99383 6.10969 6.16326 6.19472 6.43981 6.64502 6.85000 7.26834 7.34328 8.78420 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.003189 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.148152 B = 8778.174616 C = 9332.251215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.372 6.372 3 C 0.088 3.912 4 C -0.156 4.156 5 C 0.120 3.880 6 N -0.620 5.620 7 C 0.546 3.454 8 O -0.530 6.530 9 C 0.506 3.494 10 O -0.554 6.554 11 N -0.582 5.582 12 C 0.118 3.882 13 C -0.115 4.115 14 C 0.233 3.767 15 O -0.589 6.589 16 C -0.554 4.554 17 H 0.072 0.928 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.107 3.893 25 C 0.080 3.920 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.377 0.623 39 H 0.271 0.729 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.825 -16.270 -9.309 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.290 6.290 3 C 0.047 3.953 4 C -0.213 4.213 5 C -0.001 4.001 6 N -0.357 5.357 7 C 0.330 3.670 8 O -0.407 6.407 9 C 0.289 3.711 10 O -0.434 6.434 11 N -0.314 5.314 12 C -0.004 4.004 13 C -0.153 4.153 14 C 0.193 3.807 15 O -0.398 6.398 16 C -0.592 4.592 17 H 0.090 0.910 18 C -0.174 4.174 19 N -0.555 5.555 20 Si 0.792 3.208 21 H -0.189 1.189 22 H -0.206 1.206 23 H -0.207 1.207 24 C -0.015 4.015 25 C -0.043 4.043 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.227 0.773 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.275 -16.488 -9.610 19.364 hybrid contribution -0.803 1.185 1.470 2.051 sum -4.078 -15.304 -8.141 17.807 Atomic orbital electron populations 1.23068 0.79116 1.04371 1.01326 1.87925 1.21863 1.24541 1.94669 1.22952 0.93523 0.84951 0.93899 1.22004 1.02489 0.98040 0.98809 1.23321 0.94452 0.88297 0.93996 1.48847 1.22570 1.24184 1.40052 1.19286 0.83156 0.81371 0.83153 1.90726 1.22564 1.74027 1.53344 1.20002 0.84262 0.82298 0.84507 1.90679 1.23534 1.74459 1.54744 1.48679 1.20870 1.24544 1.37327 1.22157 0.82916 0.97870 0.97417 1.22728 0.97110 0.94515 1.00909 1.19860 0.88033 0.86769 0.86063 1.86096 1.43258 1.70106 1.40297 1.21796 0.94396 1.29526 1.13517 0.91031 1.25833 0.94706 0.97005 0.99849 1.69757 0.99691 1.43925 1.42164 0.85362 0.78676 0.78168 0.78550 1.18871 1.20576 1.20721 1.23082 1.01312 0.88037 0.89057 1.24010 0.83297 0.98021 0.98965 0.93483 0.92068 0.87618 0.89308 0.89385 0.92588 0.88209 0.86806 0.91364 0.89833 0.89549 0.88793 0.77313 0.91918 0.92402 0.92585 0.87820 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.36 113.37 1.17 1.36 16 2 O -0.37 -6.15 10.71 -148.98 -1.60 -7.74 16 3 C 0.09 1.59 1.56 -10.37 -0.02 1.57 16 4 C -0.16 -2.51 8.97 71.98 0.65 -1.87 16 5 C 0.12 2.40 8.04 83.17 0.67 3.07 16 6 N -0.62 -17.44 3.50 -859.92 -3.01 -20.44 16 7 C 0.55 19.56 8.11 87.26 0.71 20.27 16 8 O -0.53 -19.97 14.90 -3.26 -0.05 -20.02 16 9 C 0.51 21.24 7.91 87.26 0.69 21.93 16 10 O -0.55 -25.10 15.45 -3.26 -0.05 -25.15 16 11 N -0.58 -25.42 3.33 -813.37 -2.71 -28.12 16 12 C 0.12 4.58 5.49 86.73 0.48 5.06 16 13 C -0.11 -4.62 6.13 31.78 0.19 -4.43 16 14 C 0.23 11.39 0.89 -10.15 -0.01 11.38 16 15 O -0.59 -30.68 13.19 -148.98 -1.96 -32.65 16 16 C -0.55 -28.49 8.26 25.60 0.21 -28.28 16 17 H 0.07 3.56 7.78 -2.92 -0.02 3.54 16 18 C 0.03 1.38 5.27 84.66 0.45 1.83 16 19 N -0.92 -48.81 10.68 21.45 0.23 -48.58 16 20 Si 0.97 41.04 29.54 68.60 2.03 43.06 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 C 0.11 5.24 5.51 86.86 0.48 5.72 16 25 C 0.08 1.89 7.03 83.26 0.59 2.47 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.54 6.36 -2.39 -0.02 0.53 16 28 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.12 6.12 -2.39 -0.01 1.11 16 31 H 0.06 1.16 7.94 -2.39 -0.02 1.14 16 32 H 0.10 1.83 8.12 -2.39 -0.02 1.81 16 33 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.67 7.58 -2.39 -0.02 2.65 16 35 H 0.08 2.92 7.69 -2.39 -0.02 2.90 16 36 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.09 3.46 8.02 -2.39 -0.02 3.44 16 38 H 0.38 20.37 7.18 -74.06 -0.53 19.84 16 39 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 40 H 0.06 2.88 8.03 -2.38 -0.02 2.86 16 41 H 0.06 3.08 7.48 -2.39 -0.02 3.06 16 42 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 2.15 7.36 -2.38 -0.02 2.13 16 Total: -1.00 -63.63 352.93 -0.36 -63.99 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.50 Total: 35.56 kcal Atomic # 6 Polarization: 33.85 SS G_CDS: 6.25 Total: 40.10 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -5.48 Total: -97.15 kcal Atomic # 8 Polarization: -81.90 SS G_CDS: -3.66 Total: -85.56 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -63.63 -0.36 -63.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118249167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.449 kcal (2) G-P(sol) polarization free energy of solvation -63.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds