Wall clock time and date at job start Fri Apr 10 2020 18:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 110.88399 * 2 1 4 4 C 1.55155 * 111.00688 * 123.91978 * 2 1 3 5 5 C 1.54330 * 102.94292 * 153.57723 * 4 2 1 6 6 N 1.47026 * 107.26840 * 337.81024 * 5 4 2 7 7 C 1.34780 * 125.64391 * 178.97562 * 6 5 4 8 8 O 1.21347 * 119.99522 * 179.97438 * 7 6 5 9 9 C 1.49446 * 120.00156 * 359.97321 * 7 6 5 10 10 O 1.21346 * 119.99865 * 0.02562 * 9 7 6 11 11 N 1.34772 * 119.99904 * 180.02562 * 9 7 6 12 12 C 1.47426 * 125.65245 * 0.02749 * 11 9 7 13 13 C 1.54901 * 104.83579 * 204.09069 * 12 11 9 14 14 C 1.55158 * 101.58353 * 322.99116 * 13 12 11 15 15 O 1.42900 * 110.71557 * 277.13920 * 14 13 12 16 16 C 1.50693 * 110.72268 * 153.86444 * 14 13 12 17 17 H 1.08001 * 120.00155 * 0.02562 * 16 14 13 18 18 C 1.37876 * 120.00055 * 179.97438 * 16 14 13 19 19 N 1.31516 * 120.00023 * 0.02562 * 18 16 14 20 20 Si 1.86805 * 120.00149 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47091 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46871 * 120.00068 * 20 18 16 23 23 H 1.48500 * 109.47074 * 240.00472 * 20 18 16 24 24 C 1.47029 * 125.64739 * 179.71731 * 11 9 7 25 25 C 1.47420 * 108.70428 * 358.94103 * 6 5 4 26 26 H 1.09004 * 109.46972 * 182.42506 * 1 2 3 27 27 H 1.08998 * 109.47042 * 302.42138 * 1 2 3 28 28 H 1.08993 * 109.47294 * 62.42876 * 1 2 3 29 29 H 0.96700 * 113.99958 * 297.57278 * 3 2 1 30 30 H 1.08998 * 110.71769 * 35.21845 * 4 2 1 31 31 H 1.08991 * 110.72382 * 271.94241 * 4 2 1 32 32 H 1.08998 * 109.88224 * 218.39343 * 5 4 2 33 33 H 1.08998 * 109.88221 * 97.22736 * 5 4 2 34 34 H 1.09007 * 110.36382 * 322.93249 * 12 11 9 35 35 H 1.09005 * 110.36332 * 85.13707 * 12 11 9 36 36 H 1.08998 * 111.00725 * 81.06375 * 13 12 11 37 37 H 1.09000 * 111.00746 * 204.91320 * 13 12 11 38 38 H 0.96705 * 113.99829 * 180.02562 * 15 14 13 39 39 H 0.97000 * 119.99629 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.88265 * 298.39671 * 24 11 9 41 41 H 1.08997 * 109.88075 * 59.55990 * 24 11 9 42 42 H 1.08997 * 110.36858 * 142.96748 * 25 6 5 43 43 H 1.08999 * 110.36307 * 265.28963 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0394 1.3352 0.0000 4 6 2.0862 -0.8083 1.2019 5 6 3.4675 -1.2743 0.6955 6 7 3.4271 -1.2427 -0.7738 7 6 4.4477 -1.5609 -1.5946 8 8 4.3008 -1.4988 -2.7976 9 6 5.7603 -1.9901 -1.0233 10 8 5.9070 -2.0525 0.1796 11 7 6.7809 -2.3078 -1.8441 12 6 6.7408 -2.2755 -3.3174 13 6 7.8435 -3.2666 -3.7661 14 6 8.9395 -3.0182 -2.6963 15 8 9.7344 -1.8820 -3.0413 16 6 9.8023 -4.2415 -2.5229 17 1 9.6079 -5.1271 -3.1098 18 6 10.8405 -4.2300 -1.6157 19 7 11.0776 -3.1515 -0.9014 20 14 11.9096 -5.7466 -1.4003 21 1 11.4385 -6.8182 -2.3140 22 1 13.3195 -5.4079 -1.7206 23 1 11.8209 -6.2192 0.0047 24 6 8.1209 -2.7378 -1.4183 25 6 2.0853 -0.8061 -1.2006 26 1 -0.3633 -1.0268 0.0435 27 1 -0.3633 0.5510 0.8675 28 1 -0.3633 0.4756 -0.9109 29 1 1.7976 1.8484 -0.7831 30 1 1.4469 -1.6636 1.4203 31 1 2.1922 -0.1707 2.0795 32 1 3.6651 -2.2896 1.0392 33 1 4.2427 -0.6000 1.0597 34 1 5.7658 -2.6042 -3.6776 35 1 6.9599 -1.2715 -3.6810 36 1 7.4844 -4.2949 -3.7260 37 1 8.2079 -3.0203 -4.7634 38 1 10.4348 -1.6839 -2.4046 39 1 11.8082 -3.1433 -0.2635 40 1 8.5965 -1.9478 -0.8371 41 1 8.0463 -3.6465 -0.8212 42 1 2.1559 -0.1712 -2.0837 43 1 1.4520 -1.6698 -1.4030 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118249634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:50 Heat of formation + Delta-G solvation = -177.039422 kcal Electronic energy + Delta-G solvation = -27088.925956 eV Core-core repulsion = 23133.528836 eV Total energy + Delta-G solvation = -3955.397121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03612 -40.62687 -39.33122 -38.91995 -36.68331 -35.98943 -34.20167 -32.84101 -31.92104 -30.70151 -29.81073 -28.53416 -27.30063 -25.36104 -24.12631 -22.93618 -21.55299 -21.47260 -20.33385 -19.19701 -18.52962 -18.20962 -17.70865 -17.56385 -17.17284 -16.64650 -16.48950 -16.12515 -15.61956 -15.15219 -14.97264 -14.86889 -14.80399 -14.61441 -14.45028 -13.94939 -13.78889 -13.55879 -13.45792 -13.36537 -13.06618 -12.90068 -12.70666 -12.62751 -12.48671 -12.39426 -12.31698 -12.25707 -12.06912 -11.57034 -11.22810 -11.15861 -10.74234 -10.55524 -10.31611 -9.99154 -9.69797 -8.29416 -6.45499 0.26612 1.11521 1.41022 1.44096 1.55119 2.03130 2.28422 2.38587 2.96072 2.99537 3.19132 3.38321 3.55020 3.76555 3.83082 4.03082 4.12742 4.18364 4.31404 4.34925 4.45952 4.56832 4.60459 4.64626 4.73044 4.82154 4.87664 4.91151 5.01100 5.05821 5.06973 5.09514 5.16197 5.28843 5.31401 5.41404 5.71563 5.94194 5.99127 6.24902 6.46538 6.62889 6.79862 6.84965 7.26388 7.35826 8.77374 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.028878 B = 0.003177 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.362789 B = 8810.433644 C = 9220.957898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 O -0.569 6.569 4 C -0.114 4.114 5 C 0.106 3.894 6 N -0.585 5.585 7 C 0.527 3.473 8 O -0.533 6.533 9 C 0.502 3.498 10 O -0.552 6.552 11 N -0.584 5.584 12 C 0.109 3.891 13 C -0.113 4.113 14 C 0.234 3.766 15 O -0.589 6.589 16 C -0.556 4.556 17 H 0.070 0.930 18 C 0.026 3.974 19 N -0.917 5.917 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.282 1.282 24 C 0.117 3.883 25 C 0.074 3.926 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.393 0.607 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.379 0.621 39 H 0.272 0.728 40 H 0.040 0.960 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.687 4.743 1.480 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.077 3.923 3 O -0.377 6.377 4 C -0.152 4.152 5 C -0.016 4.016 6 N -0.318 5.318 7 C 0.309 3.691 8 O -0.411 6.411 9 C 0.285 3.715 10 O -0.432 6.432 11 N -0.317 5.317 12 C -0.012 4.012 13 C -0.151 4.151 14 C 0.194 3.806 15 O -0.399 6.399 16 C -0.594 4.594 17 H 0.088 0.912 18 C -0.175 4.175 19 N -0.557 5.557 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.208 1.208 24 C -0.006 4.006 25 C -0.047 4.047 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.244 0.756 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.230 0.770 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.102 0.898 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.727 4.640 1.654 22.278 hybrid contribution 1.463 -0.387 0.407 1.567 sum -20.264 4.253 2.061 20.808 Atomic orbital electron populations 1.22217 0.90909 1.04538 1.04019 1.22403 0.94498 0.82115 0.93269 1.86546 1.78756 1.24169 1.48262 1.22867 0.93896 1.00508 0.97909 1.22235 0.99458 1.02085 0.77866 1.48223 1.11863 1.63372 1.08352 1.19496 0.84238 0.79254 0.86078 1.90675 1.82821 1.53371 1.14241 1.20127 0.85314 0.79851 0.86201 1.90687 1.83348 1.54247 1.14900 1.48700 1.11822 1.62075 1.09082 1.22624 1.00915 1.00132 0.77572 1.22824 0.93679 0.99074 0.99550 1.19718 0.87843 0.84645 0.88438 1.86086 1.49702 1.50166 1.53928 1.21841 1.14861 0.99670 1.22985 0.91207 1.25842 0.98179 0.99410 0.94080 1.69680 1.31404 1.29428 1.25171 0.85353 0.78284 0.79254 0.77830 1.18922 1.20317 1.20754 1.22812 0.80062 0.97411 1.00301 1.23416 0.81442 1.00531 0.99314 0.89575 0.90564 0.90570 0.75644 0.86240 0.88382 0.90931 0.92580 0.87882 0.91609 0.89502 0.89013 0.76956 0.91810 0.94153 0.93327 0.89761 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.00 71.98 0.65 -0.49 16 2 C 0.12 1.67 1.32 -9.40 -0.01 1.66 16 3 O -0.57 -9.86 13.18 -148.98 -1.96 -11.83 16 4 C -0.11 -1.77 6.16 31.78 0.20 -1.57 16 5 C 0.11 2.68 5.49 86.73 0.48 3.16 16 6 N -0.58 -16.26 3.33 -813.37 -2.71 -18.96 16 7 C 0.53 18.69 7.88 87.27 0.69 19.38 16 8 O -0.53 -19.57 14.03 -3.24 -0.05 -19.61 16 9 C 0.50 21.16 7.88 87.27 0.69 21.85 16 10 O -0.55 -25.07 14.45 -3.23 -0.05 -25.12 16 11 N -0.58 -25.88 3.33 -813.35 -2.70 -28.59 16 12 C 0.11 4.30 6.05 86.85 0.53 4.83 16 13 C -0.11 -4.68 6.23 31.98 0.20 -4.48 16 14 C 0.23 11.65 0.86 -10.35 -0.01 11.65 16 15 O -0.59 -30.84 13.08 -148.98 -1.95 -32.79 16 16 C -0.56 -29.24 8.11 25.60 0.21 -29.03 16 17 H 0.07 3.57 7.76 -2.91 -0.02 3.55 16 18 C 0.03 1.33 5.28 84.65 0.45 1.78 16 19 N -0.92 -49.51 10.97 21.45 0.24 -49.27 16 20 Si 0.97 41.78 29.54 68.60 2.03 43.81 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 C 0.12 5.87 5.54 86.73 0.48 6.35 16 25 C 0.07 1.37 6.11 86.86 0.53 1.90 16 26 H 0.09 0.41 8.11 -2.38 -0.02 0.39 16 27 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.39 3.94 9.11 -74.06 -0.67 3.26 16 30 H 0.12 1.19 8.01 -2.39 -0.02 1.17 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.94 7.69 -2.39 -0.02 1.92 16 33 H 0.06 1.72 7.58 -2.39 -0.02 1.70 16 34 H 0.10 3.74 6.16 -2.38 -0.01 3.72 16 35 H 0.07 2.61 8.14 -2.38 -0.02 2.60 16 36 H 0.09 3.37 8.02 -2.39 -0.02 3.36 16 37 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.38 20.58 6.98 -74.05 -0.52 20.06 16 39 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 40 H 0.04 2.22 8.07 -2.39 -0.02 2.20 16 41 H 0.05 2.62 7.81 -2.39 -0.02 2.60 16 42 H 0.08 1.58 8.04 -2.39 -0.02 1.56 16 43 H 0.10 1.49 8.04 -2.39 -0.02 1.47 16 Total: -1.00 -67.35 349.54 -2.24 -69.59 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: -0.15 Total: 35.80 kcal Atomic # 6 Polarization: 31.92 SS G_CDS: 5.06 Total: 36.98 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -5.18 Total: -96.83 kcal Atomic # 8 Polarization: -85.35 SS G_CDS: -4.00 Total: -89.35 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -67.35 -2.24 -69.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118249634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.450 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds