Wall clock time and date at job start Fri Apr 10 2020 18:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 110.88524 * 2 1 4 4 C 1.55160 * 111.00513 * 236.12457 * 2 1 3 5 5 C 1.54328 * 102.94103 * 206.42245 * 4 2 1 6 6 N 1.47026 * 107.26998 * 22.19348 * 5 4 2 7 7 C 1.34771 * 125.64389 * 181.02470 * 6 5 4 8 8 O 1.21358 * 119.99712 * 180.02562 * 7 6 5 9 9 C 1.49445 * 120.00512 * 0.02562 * 7 6 5 10 10 O 1.21350 * 120.00040 * 0.02562 * 9 7 6 11 11 N 1.34779 * 120.00357 * 179.97438 * 9 7 6 12 12 C 1.47425 * 125.64441 * 0.02861 * 11 9 7 13 13 C 1.54915 * 104.83168 * 155.83099 * 12 11 9 14 14 C 1.55159 * 101.57898 * 37.00967 * 13 12 11 15 15 O 1.42899 * 110.72532 * 83.03735 * 14 13 12 16 16 C 1.50706 * 110.72039 * 206.13464 * 14 13 12 17 17 H 1.07999 * 119.99681 * 117.71161 * 16 14 13 18 18 C 1.37875 * 119.99691 * 297.71564 * 16 14 13 19 19 N 1.31509 * 120.00123 * 353.57367 * 18 16 14 20 20 Si 1.86798 * 119.99537 * 173.57993 * 18 16 14 21 21 H 1.48507 * 109.47122 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47178 * 299.99504 * 20 18 16 23 23 H 1.48493 * 109.47490 * 59.99794 * 20 18 16 24 24 C 1.47023 * 125.64841 * 179.97438 * 11 9 7 25 25 C 1.47421 * 108.70313 * 1.28607 * 6 5 4 26 26 H 1.08999 * 109.47032 * 183.87780 * 1 2 3 27 27 H 1.08996 * 109.47534 * 303.87694 * 1 2 3 28 28 H 1.09006 * 109.47082 * 63.88046 * 1 2 3 29 29 H 0.96702 * 114.00104 * 56.12228 * 3 2 1 30 30 H 1.08995 * 110.72126 * 88.05742 * 4 2 1 31 31 H 1.09004 * 110.71777 * 324.78143 * 4 2 1 32 32 H 1.08996 * 109.88078 * 262.77573 * 5 4 2 33 33 H 1.09001 * 109.87893 * 141.60432 * 5 4 2 34 34 H 1.09000 * 110.36898 * 36.99537 * 12 11 9 35 35 H 1.08997 * 110.46154 * 274.71800 * 12 11 9 36 36 H 1.08997 * 111.00891 * 278.93995 * 13 12 11 37 37 H 1.08998 * 111.00583 * 155.08103 * 13 12 11 38 38 H 0.96695 * 114.00531 * 181.67176 * 15 14 13 39 39 H 0.96999 * 120.00365 * 357.40756 * 19 18 16 40 40 H 1.08999 * 109.87923 * 61.68405 * 24 11 9 41 41 H 1.09000 * 109.88081 * 300.51324 * 24 11 9 42 42 H 1.09001 * 110.36905 * 94.48420 * 25 6 5 43 43 H 1.09010 * 110.36617 * 216.80902 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0394 1.3351 0.0000 4 6 2.0862 -0.8074 -1.2026 5 6 3.4675 -1.2738 -0.6966 6 7 3.4271 -1.2434 0.7728 7 6 4.4477 -1.5622 1.5933 8 8 4.3007 -1.5011 2.7964 9 6 5.7602 -1.9909 1.0217 10 8 5.9073 -2.0516 -0.1814 11 7 6.7810 -2.3093 1.8422 12 6 6.7403 -2.2793 3.3156 13 6 7.8422 -3.2720 3.7630 14 6 8.9387 -3.0227 2.6939 15 8 9.7370 -1.8900 3.0429 16 6 9.8007 -4.2464 2.5188 17 1 9.8322 -4.7527 1.5654 18 6 10.5489 -4.7195 3.5758 19 7 10.6104 -4.0345 4.6967 20 14 11.4755 -6.3336 3.4156 21 1 12.1980 -6.6175 4.6816 22 1 10.5142 -7.4307 3.1371 23 1 12.4513 -6.2357 2.3006 24 6 8.1189 -2.7450 1.4162 25 6 2.0836 -0.8125 1.2000 26 1 -0.3633 -1.0253 0.0695 27 1 -0.3634 0.5728 0.8531 28 1 -0.3633 0.4524 -0.9228 29 1 1.7195 1.8781 0.7334 30 1 2.1921 -0.1690 -2.0797 31 1 1.4468 -1.6626 -1.4217 32 1 4.2426 -0.5992 -1.0602 33 1 3.6650 -2.2889 -1.0410 34 1 5.7651 -2.6079 3.6750 35 1 6.9610 -1.2769 3.6825 36 1 7.4824 -4.3000 3.7212 37 1 8.2066 -3.0275 4.7608 38 1 10.4212 -1.6760 2.3940 39 1 10.1602 -3.1782 4.7671 40 1 8.5968 -1.9579 0.8329 41 1 8.0405 -3.6548 0.8210 42 1 1.4524 -1.6788 1.3980 43 1 2.1515 -0.1810 2.0860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118249637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:02 Heat of formation + Delta-G solvation = -152.064002 kcal Electronic energy + Delta-G solvation = -27032.753279 eV Core-core repulsion = 23078.439174 eV Total energy + Delta-G solvation = -3954.314105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80341 -39.48118 -38.13220 -37.43848 -35.72396 -34.49773 -32.34833 -32.06885 -29.94298 -29.92460 -28.43520 -27.49371 -25.21038 -23.93602 -22.85115 -21.62019 -20.88397 -19.86305 -19.09111 -17.69021 -17.41683 -17.05534 -16.57022 -16.28805 -15.70029 -15.35079 -15.06928 -14.85887 -14.40940 -13.87900 -13.81336 -13.49970 -13.30262 -13.13984 -12.95768 -12.93626 -12.78531 -12.48352 -12.37663 -12.07923 -11.97094 -11.70812 -11.62216 -11.21880 -11.08295 -10.86285 -10.74795 -10.52358 -10.51353 -10.19386 -10.12952 -9.42504 -9.13766 -8.86261 -8.56702 -8.26110 -8.16356 -6.40907 -4.28585 1.64547 2.34747 3.39274 3.40357 3.41737 3.54026 3.59565 3.69298 4.00694 4.22531 4.41099 4.44827 4.48933 4.88045 4.96403 5.10035 5.19886 5.21973 5.31918 5.37240 5.40589 5.52146 5.55835 5.60732 5.70311 5.75962 5.84439 5.91574 6.02777 6.11532 6.24367 6.45381 6.56025 6.80456 6.92494 7.11269 7.24970 7.27215 7.62903 7.81934 7.86273 8.23976 8.27300 8.77586 8.95002 9.55595 10.96910 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.034594 B = 0.002978 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.197209 B = 9399.835301 C = 9593.860844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 O -0.546 6.546 4 C -0.122 4.122 5 C 0.112 3.888 6 N -0.591 5.591 7 C 0.526 3.474 8 O -0.517 6.517 9 C 0.513 3.487 10 O -0.534 6.534 11 N -0.573 5.573 12 C 0.095 3.905 13 C -0.110 4.110 14 C 0.232 3.768 15 O -0.573 6.573 16 C -0.640 4.640 17 H 0.055 0.945 18 C 0.040 3.960 19 N -0.889 5.889 20 Si 1.065 2.935 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.287 1.287 24 C 0.091 3.909 25 C 0.082 3.918 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.379 0.621 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.362 0.638 39 H 0.290 0.710 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.303 6.967 -8.463 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.071 3.929 3 O -0.352 6.352 4 C -0.160 4.160 5 C -0.010 4.010 6 N -0.326 5.326 7 C 0.309 3.691 8 O -0.392 6.392 9 C 0.295 3.705 10 O -0.413 6.413 11 N -0.305 5.305 12 C -0.027 4.027 13 C -0.149 4.149 14 C 0.192 3.808 15 O -0.378 6.378 16 C -0.678 4.678 17 H 0.073 0.927 18 C -0.170 4.170 19 N -0.524 5.524 20 Si 0.893 3.107 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.214 1.214 24 C -0.031 4.031 25 C -0.041 4.041 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.227 0.773 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.209 0.791 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.403 5.706 -7.604 20.713 hybrid contribution -0.942 1.251 -0.891 1.802 sum -19.344 6.957 -8.494 22.243 Atomic orbital electron populations 1.22293 0.93788 1.03380 1.03197 1.22354 0.92671 0.83037 0.94851 1.86578 1.73311 1.22173 1.53132 1.22811 0.96158 0.99356 0.97650 1.22142 0.97401 1.02868 0.78618 1.48082 1.11249 1.65428 1.07873 1.19998 0.84529 0.78503 0.86025 1.90723 1.82680 1.51807 1.14008 1.19467 0.84378 0.80363 0.86281 1.90702 1.82761 1.53894 1.13946 1.48452 1.11852 1.61669 1.08548 1.22771 1.01130 1.00734 0.78027 1.22848 0.93633 0.97976 1.00401 1.19841 0.88041 0.85381 0.87550 1.86373 1.49483 1.50784 1.51167 1.22150 1.31671 1.13050 1.00886 0.92720 1.25752 0.95673 1.03168 0.92370 1.70652 1.39584 1.15356 1.26786 0.83617 0.76229 0.74876 0.75984 1.20705 1.21345 1.21377 1.23086 0.80630 0.98984 1.00401 1.23062 0.83351 0.99260 0.98408 0.90931 0.91743 0.91029 0.77295 0.88830 0.89060 0.89991 0.90240 0.89438 0.91398 0.90345 0.89813 0.79145 0.89681 0.92233 0.90689 0.90106 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 8.98 37.16 0.33 -0.52 16 2 C 0.11 0.89 1.33 -88.35 -0.12 0.78 16 3 O -0.55 -4.97 13.21 -35.23 -0.47 -5.44 16 4 C -0.12 -1.01 6.15 -24.89 -0.15 -1.16 16 5 C 0.11 1.36 5.49 -3.06 -0.02 1.34 16 6 N -0.59 -8.19 3.32 -170.88 -0.57 -8.76 16 7 C 0.53 9.15 7.88 -11.59 -0.09 9.06 16 8 O -0.52 -9.70 14.03 5.49 0.08 -9.62 16 9 C 0.51 10.00 7.88 -11.59 -0.09 9.91 16 10 O -0.53 -10.80 14.45 5.50 0.08 -10.72 16 11 N -0.57 -11.82 3.33 -171.02 -0.57 -12.39 16 12 C 0.10 1.93 6.06 -2.53 -0.02 1.92 16 13 C -0.11 -2.50 5.53 -24.58 -0.14 -2.64 16 14 C 0.23 5.53 0.68 -89.93 -0.06 5.47 16 15 O -0.57 -13.68 11.52 -35.23 -0.41 -14.08 16 16 C -0.64 -16.86 8.17 -34.44 -0.28 -17.14 16 17 H 0.05 1.44 7.57 -52.49 -0.40 1.04 16 18 C 0.04 1.09 5.26 -17.82 -0.09 0.99 16 19 N -0.89 -25.49 13.30 55.43 0.74 -24.75 16 20 Si 1.07 24.02 29.91 -169.99 -5.08 18.94 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.09 1.98 6.22 -3.06 -0.02 1.96 16 25 C 0.08 0.83 6.12 -2.41 -0.01 0.82 16 26 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.38 2.04 9.07 45.56 0.41 2.46 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.57 8.04 -51.93 -0.42 0.15 16 32 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 33 H 0.08 0.99 7.70 -51.93 -0.40 0.59 16 34 H 0.09 1.71 6.16 -51.93 -0.32 1.39 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.08 1.81 8.04 -51.93 -0.42 1.39 16 37 H 0.08 1.99 6.94 -51.93 -0.36 1.63 16 38 H 0.36 7.72 9.08 45.56 0.41 8.13 16 39 H 0.29 8.35 4.93 -40.82 -0.20 8.14 16 40 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 41 H 0.07 1.68 7.65 -51.93 -0.40 1.28 16 42 H 0.08 0.71 7.99 -51.93 -0.41 0.30 16 43 H 0.08 0.88 8.04 -51.92 -0.42 0.46 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -32.67 347.65 -6.35 -39.03 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -4.63 Total: 11.78 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -0.76 Total: 10.78 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.40 Total: -45.90 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.71 Total: -39.86 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.08 Total: 18.94 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.67 -6.35 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118249637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.038 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds