Wall clock time and date at job start Fri Apr 10 2020 18:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 110.88524 * 2 1 4 4 C 1.55160 * 111.00513 * 236.12457 * 2 1 3 5 5 C 1.54328 * 102.94103 * 206.42245 * 4 2 1 6 6 N 1.47026 * 107.26998 * 22.19348 * 5 4 2 7 7 C 1.34771 * 125.64389 * 181.02470 * 6 5 4 8 8 O 1.21358 * 119.99712 * 180.02562 * 7 6 5 9 9 C 1.49445 * 120.00512 * 0.02562 * 7 6 5 10 10 O 1.21350 * 120.00040 * 0.02562 * 9 7 6 11 11 N 1.34779 * 120.00357 * 179.97438 * 9 7 6 12 12 C 1.47425 * 125.64441 * 0.02861 * 11 9 7 13 13 C 1.54915 * 104.83168 * 155.83099 * 12 11 9 14 14 C 1.55159 * 101.57898 * 37.00967 * 13 12 11 15 15 O 1.42899 * 110.72532 * 83.03735 * 14 13 12 16 16 C 1.50706 * 110.72039 * 206.13464 * 14 13 12 17 17 H 1.07999 * 119.99681 * 117.71161 * 16 14 13 18 18 C 1.37875 * 119.99691 * 297.71564 * 16 14 13 19 19 N 1.31509 * 120.00123 * 353.57367 * 18 16 14 20 20 Si 1.86798 * 119.99537 * 173.57993 * 18 16 14 21 21 H 1.48507 * 109.47122 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47178 * 299.99504 * 20 18 16 23 23 H 1.48493 * 109.47490 * 59.99794 * 20 18 16 24 24 C 1.47023 * 125.64841 * 179.97438 * 11 9 7 25 25 C 1.47421 * 108.70313 * 1.28607 * 6 5 4 26 26 H 1.08999 * 109.47032 * 183.87780 * 1 2 3 27 27 H 1.08996 * 109.47534 * 303.87694 * 1 2 3 28 28 H 1.09006 * 109.47082 * 63.88046 * 1 2 3 29 29 H 0.96702 * 114.00104 * 56.12228 * 3 2 1 30 30 H 1.08995 * 110.72126 * 88.05742 * 4 2 1 31 31 H 1.09004 * 110.71777 * 324.78143 * 4 2 1 32 32 H 1.08996 * 109.88078 * 262.77573 * 5 4 2 33 33 H 1.09001 * 109.87893 * 141.60432 * 5 4 2 34 34 H 1.09000 * 110.36898 * 36.99537 * 12 11 9 35 35 H 1.08997 * 110.46154 * 274.71800 * 12 11 9 36 36 H 1.08997 * 111.00891 * 278.93995 * 13 12 11 37 37 H 1.08998 * 111.00583 * 155.08103 * 13 12 11 38 38 H 0.96695 * 114.00531 * 181.67176 * 15 14 13 39 39 H 0.96999 * 120.00365 * 357.40756 * 19 18 16 40 40 H 1.08999 * 109.87923 * 61.68405 * 24 11 9 41 41 H 1.09000 * 109.88081 * 300.51324 * 24 11 9 42 42 H 1.09001 * 110.36905 * 94.48420 * 25 6 5 43 43 H 1.09010 * 110.36617 * 216.80902 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0394 1.3351 0.0000 4 6 2.0862 -0.8074 -1.2026 5 6 3.4675 -1.2738 -0.6966 6 7 3.4271 -1.2434 0.7728 7 6 4.4477 -1.5622 1.5933 8 8 4.3007 -1.5011 2.7964 9 6 5.7602 -1.9909 1.0217 10 8 5.9073 -2.0516 -0.1814 11 7 6.7810 -2.3093 1.8422 12 6 6.7403 -2.2793 3.3156 13 6 7.8422 -3.2720 3.7630 14 6 8.9387 -3.0227 2.6939 15 8 9.7370 -1.8900 3.0429 16 6 9.8007 -4.2464 2.5188 17 1 9.8322 -4.7527 1.5654 18 6 10.5489 -4.7195 3.5758 19 7 10.6104 -4.0345 4.6967 20 14 11.4755 -6.3336 3.4156 21 1 12.1980 -6.6175 4.6816 22 1 10.5142 -7.4307 3.1371 23 1 12.4513 -6.2357 2.3006 24 6 8.1189 -2.7450 1.4162 25 6 2.0836 -0.8125 1.2000 26 1 -0.3633 -1.0253 0.0695 27 1 -0.3634 0.5728 0.8531 28 1 -0.3633 0.4524 -0.9228 29 1 1.7195 1.8781 0.7334 30 1 2.1921 -0.1690 -2.0797 31 1 1.4468 -1.6626 -1.4217 32 1 4.2426 -0.5992 -1.0602 33 1 3.6650 -2.2889 -1.0410 34 1 5.7651 -2.6079 3.6750 35 1 6.9610 -1.2769 3.6825 36 1 7.4824 -4.3000 3.7212 37 1 8.2066 -3.0275 4.7608 38 1 10.4212 -1.6760 2.3940 39 1 10.1602 -3.1782 4.7671 40 1 8.5968 -1.9579 0.8329 41 1 8.0405 -3.6548 0.8210 42 1 1.4524 -1.6788 1.3980 43 1 2.1515 -0.1810 2.0860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118249637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:02 Heat of formation + Delta-G solvation = -179.099150 kcal Electronic energy + Delta-G solvation = -27033.925611 eV Core-core repulsion = 23078.439174 eV Total energy + Delta-G solvation = -3955.486437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.11502 -40.73067 -39.45491 -39.04128 -36.79460 -36.11720 -34.38338 -32.85666 -31.70671 -30.72368 -30.19035 -28.46944 -26.87048 -25.37809 -24.18065 -23.03192 -21.72162 -21.57585 -20.48226 -19.56707 -18.62792 -18.27475 -17.81897 -17.63463 -17.31658 -16.72470 -16.43943 -15.70786 -15.67050 -15.24539 -15.05958 -14.93473 -14.86401 -14.67496 -14.51040 -14.09475 -13.95518 -13.81545 -13.49881 -13.37210 -13.05123 -12.89783 -12.72709 -12.58910 -12.48884 -12.41720 -12.30463 -12.11893 -11.91361 -11.59219 -11.27053 -11.19362 -10.69410 -10.54928 -10.18711 -10.05379 -9.78961 -8.54082 -6.42662 0.19248 1.03163 1.57510 1.62744 1.82895 1.95585 2.19932 2.57753 2.92356 3.14941 3.15833 3.35113 3.52592 3.58131 3.74340 3.81264 3.93435 4.16624 4.19462 4.30704 4.32556 4.43384 4.52373 4.57850 4.65760 4.68833 4.78791 4.83674 4.87116 4.97980 4.99705 5.06178 5.07800 5.13018 5.28737 5.39918 5.82380 5.91222 6.07987 6.16297 6.37617 6.63184 6.76752 6.78383 7.09782 7.49382 8.82798 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.034594 B = 0.002978 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.197209 B = 9399.835301 C = 9593.860844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.119 3.881 3 O -0.568 6.568 4 C -0.114 4.114 5 C 0.106 3.894 6 N -0.584 5.584 7 C 0.523 3.477 8 O -0.537 6.537 9 C 0.509 3.491 10 O -0.544 6.544 11 N -0.581 5.581 12 C 0.113 3.887 13 C -0.106 4.106 14 C 0.224 3.776 15 O -0.581 6.581 16 C -0.648 4.648 17 H 0.050 0.950 18 C -0.003 4.003 19 N -0.915 5.915 20 Si 1.110 2.890 21 H -0.286 1.286 22 H -0.274 1.274 23 H -0.272 1.272 24 C 0.100 3.900 25 C 0.073 3.927 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.394 0.606 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.371 0.629 39 H 0.279 0.721 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.517 6.939 -9.567 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.078 3.922 3 O -0.376 6.376 4 C -0.152 4.152 5 C -0.016 4.016 6 N -0.317 5.317 7 C 0.306 3.694 8 O -0.415 6.415 9 C 0.293 3.707 10 O -0.423 6.423 11 N -0.314 5.314 12 C -0.009 4.009 13 C -0.145 4.145 14 C 0.184 3.816 15 O -0.387 6.387 16 C -0.686 4.686 17 H 0.069 0.931 18 C -0.207 4.207 19 N -0.551 5.551 20 Si 0.932 3.068 21 H -0.211 1.211 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.022 4.022 25 C -0.048 4.048 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.244 0.756 30 H 0.118 0.882 31 H 0.137 0.863 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.219 0.781 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.667 5.710 -8.752 23.159 hybrid contribution -0.297 1.328 -0.645 1.506 sum -20.964 7.038 -9.397 24.028 Atomic orbital electron populations 1.22245 0.90917 1.04555 1.04124 1.22418 0.94474 0.82182 0.93160 1.86546 1.74089 1.22853 1.54139 1.22870 0.93965 1.00523 0.97827 1.22264 0.99546 1.02224 0.77614 1.48228 1.11719 1.63263 1.08485 1.19537 0.84453 0.79380 0.86073 1.90705 1.82879 1.53377 1.14528 1.19999 0.85019 0.79619 0.86104 1.90689 1.83164 1.54019 1.14395 1.48456 1.11790 1.62448 1.08671 1.22578 1.00589 0.99856 0.77891 1.22714 0.94186 0.98173 0.99388 1.19865 0.88204 0.84702 0.88850 1.86345 1.49969 1.50575 1.51829 1.22445 1.31740 1.13807 1.00619 0.93144 1.27015 0.96235 1.05558 0.91914 1.70759 1.40997 1.15505 1.27824 0.83028 0.75710 0.71909 0.76140 1.21150 1.19914 1.19781 1.22800 0.81372 0.98779 0.99237 1.23462 0.81447 1.00420 0.99479 0.89670 0.90595 0.90345 0.75602 0.88170 0.86304 0.92198 0.90736 0.88388 0.91502 0.91131 0.91300 0.78145 0.90853 0.91865 0.91557 0.88104 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 8.98 71.98 0.65 -0.35 16 2 C 0.12 1.55 1.33 -9.32 -0.01 1.54 16 3 O -0.57 -9.11 13.21 -148.98 -1.97 -11.08 16 4 C -0.11 -1.57 6.15 31.79 0.20 -1.38 16 5 C 0.11 2.43 5.49 86.73 0.48 2.91 16 6 N -0.58 -15.45 3.32 -812.91 -2.70 -18.16 16 7 C 0.52 17.92 7.88 87.27 0.69 18.61 16 8 O -0.54 -19.84 14.03 -3.27 -0.05 -19.89 16 9 C 0.51 19.83 7.88 87.27 0.69 20.52 16 10 O -0.54 -21.98 14.45 -3.25 -0.05 -22.03 16 11 N -0.58 -24.05 3.33 -813.35 -2.71 -26.76 16 12 C 0.11 4.60 6.06 86.86 0.53 5.12 16 13 C -0.11 -4.91 5.53 31.99 0.18 -4.73 16 14 C 0.22 10.82 0.68 -10.35 -0.01 10.81 16 15 O -0.58 -28.16 11.52 -148.98 -1.72 -29.87 16 16 C -0.65 -34.43 8.17 25.60 0.21 -34.22 16 17 H 0.05 2.66 7.57 -2.91 -0.02 2.64 16 18 C 0.00 -0.16 5.26 84.65 0.45 0.29 16 19 N -0.92 -53.14 13.30 21.45 0.29 -52.86 16 20 Si 1.11 48.15 29.91 68.60 2.05 50.20 16 21 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 24 C 0.10 4.42 6.22 86.73 0.54 4.96 16 25 C 0.07 1.31 6.12 86.93 0.53 1.85 16 26 H 0.08 0.35 8.07 -2.39 -0.02 0.34 16 27 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.39 3.41 9.07 -74.06 -0.67 2.74 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.12 1.01 8.04 -2.38 -0.02 0.99 16 32 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 33 H 0.07 1.79 7.70 -2.39 -0.02 1.77 16 34 H 0.10 3.81 6.16 -2.39 -0.01 3.80 16 35 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.07 3.31 8.04 -2.39 -0.02 3.30 16 37 H 0.07 3.37 6.94 -2.39 -0.02 3.35 16 38 H 0.37 16.03 9.08 -74.06 -0.67 15.36 16 39 H 0.28 16.45 4.93 -92.71 -0.46 15.99 16 40 H 0.06 2.70 8.07 -2.39 -0.02 2.68 16 41 H 0.07 3.00 7.65 -2.39 -0.02 2.99 16 42 H 0.10 1.46 7.99 -2.39 -0.02 1.44 16 43 H 0.08 1.54 8.04 -2.38 -0.02 1.52 16 Total: -1.00 -70.25 347.65 -1.73 -71.98 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: 0.02 Total: 32.55 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: 5.10 Total: 25.92 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -5.12 Total: -97.77 kcal Atomic # 8 Polarization: -79.09 SS G_CDS: -3.78 Total: -82.87 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.05 Total: 50.20 kcal Total: -70.25 -1.73 -71.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118249637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.121 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds