Wall clock time and date at job start Fri Apr 10 2020 18:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99905 * 2 1 4 4 O 1.42897 * 109.46713 * 135.00174 * 3 2 1 5 5 C 1.42907 * 113.99658 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46883 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.47076 * 65.00281 * 6 5 4 8 8 C 1.34774 * 120.00160 * 179.97438 * 7 6 5 9 9 O 1.21346 * 119.99798 * 359.97438 * 8 7 6 10 10 C 1.49448 * 120.00247 * 180.02562 * 8 7 6 11 11 O 1.21355 * 120.00006 * 359.97438 * 10 8 7 12 12 N 1.34774 * 120.00247 * 179.97438 * 10 8 7 13 13 C 1.47290 * 125.79121 * 359.97438 * 12 10 8 14 14 C 1.54325 * 107.30599 * 178.92556 * 13 12 10 15 15 C 1.55154 * 102.94303 * 337.81911 * 14 13 12 16 16 O 1.42902 * 111.00280 * 277.42723 * 15 14 13 17 17 C 1.50693 * 111.03939 * 153.59058 * 15 14 13 18 18 H 1.08004 * 120.00401 * 6.33015 * 17 15 14 19 19 C 1.37876 * 120.00383 * 186.33190 * 17 15 14 20 20 N 1.31512 * 119.99646 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00223 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47177 * 59.99714 * 21 19 17 23 23 H 1.48506 * 109.46953 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47102 * 299.99690 * 21 19 17 25 25 C 1.47425 * 125.65138 * 179.97438 * 12 10 8 26 26 H 1.07999 * 120.00101 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00037 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99836 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46830 * 15.00242 * 3 2 1 30 30 H 1.09002 * 109.47250 * 254.99977 * 3 2 1 31 31 H 1.09002 * 109.47197 * 60.00260 * 5 4 3 32 32 H 1.08992 * 109.47329 * 299.99766 * 5 4 3 33 33 H 1.08998 * 109.46939 * 304.99825 * 6 5 4 34 34 H 1.09001 * 109.46501 * 184.99908 * 6 5 4 35 35 H 0.97005 * 120.00064 * 359.97438 * 7 6 5 36 36 H 1.09004 * 109.85762 * 59.50172 * 13 12 10 37 37 H 1.08995 * 110.00297 * 298.43119 * 13 12 10 38 38 H 1.09002 * 110.72180 * 219.45147 * 14 13 12 39 39 H 1.08997 * 110.72163 * 96.18354 * 14 13 12 40 40 H 0.96703 * 114.00194 * 173.65090 * 16 15 14 41 41 H 0.97010 * 119.99834 * 180.02562 * 20 19 17 42 42 H 1.09002 * 110.36696 * 85.25946 * 25 12 10 43 43 H 1.08995 * 110.36608 * 323.04783 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2412 0.9526 5 6 3.9077 2.4353 1.0329 6 6 5.0099 2.2544 2.0786 7 7 5.9390 1.2128 1.6337 8 6 6.9967 0.8811 2.4002 9 8 7.1797 1.4455 3.4586 10 6 7.9448 -0.1812 1.9460 11 8 7.7621 -0.7453 0.8873 12 7 9.0029 -0.5125 2.7123 13 6 9.3457 0.0870 4.0133 14 6 10.6158 -0.6241 4.5260 15 6 10.5952 -1.9706 3.7555 16 8 9.7403 -2.9168 4.4004 17 6 11.9876 -2.5249 3.5976 18 1 12.8201 -2.0416 4.0874 19 6 12.1990 -3.6492 2.8279 20 7 11.1853 -4.2380 2.2319 21 14 13.9249 -4.3367 2.6329 22 1 14.4633 -4.7081 3.9660 23 1 13.8831 -5.5400 1.7636 24 1 14.8002 -3.3088 2.0144 25 6 10.0117 -1.5373 2.3875 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3854 2.1160 0.2660 30 1 2.4755 1.4868 -0.9927 31 1 3.2677 3.2694 1.3206 32 1 4.3579 2.6409 0.0618 33 1 4.5642 1.9619 3.0293 34 1 5.5494 3.1932 2.2037 35 1 5.7929 0.7618 0.7874 36 1 8.5271 -0.0629 4.7173 37 1 9.5405 1.1526 3.8930 38 1 10.5553 -0.7939 5.6010 39 1 11.5074 -0.0497 4.2749 40 1 9.6188 -3.7385 3.9053 41 1 11.3340 -5.0293 1.6907 42 1 10.7944 -1.1132 1.7584 43 1 9.5435 -2.3859 1.8888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118447671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:06 Heat of formation + Delta-G solvation = -136.675024 kcal Electronic energy + Delta-G solvation = -25967.204839 eV Core-core repulsion = 22013.558050 eV Total energy + Delta-G solvation = -3953.646789 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.29650 -38.79551 -38.17222 -37.13043 -35.29315 -34.24948 -33.76018 -32.23501 -30.19542 -29.90872 -27.87138 -26.32526 -25.74772 -24.06526 -22.72147 -21.49742 -20.32745 -19.77880 -19.42847 -17.36184 -17.29756 -17.09457 -16.84446 -16.14182 -15.76824 -15.47865 -15.21509 -15.09851 -14.50738 -14.46981 -14.18527 -13.66473 -13.33016 -13.05166 -13.01402 -12.83665 -12.55485 -12.53313 -12.23678 -11.72165 -11.64640 -11.48127 -11.29183 -11.07189 -11.02447 -10.76960 -10.55148 -10.48906 -10.29288 -10.19515 -9.68723 -9.35817 -9.19725 -9.10412 -8.68719 -8.38893 -7.87261 -6.28172 -4.37830 1.79640 1.85116 2.68668 3.22687 3.28308 3.30325 3.35885 3.66097 3.94639 4.26974 4.45278 4.70040 4.71151 4.77924 4.82982 4.96246 4.98979 4.99520 5.13401 5.34277 5.50994 5.52084 5.58601 5.81764 5.85953 6.08702 6.21658 6.22417 6.27906 6.37296 6.54277 6.75138 6.79014 6.82923 6.87074 7.19455 7.28332 7.34699 7.73515 7.91754 8.02903 8.09259 8.49398 8.66065 9.29727 9.38318 10.78958 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.002687 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.235856 B =10417.551078 C =11149.913348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.088 3.912 4 O -0.380 6.380 5 C 0.049 3.951 6 C 0.122 3.878 7 N -0.703 5.703 8 C 0.510 3.490 9 O -0.519 6.519 10 C 0.508 3.492 11 O -0.538 6.538 12 N -0.575 5.575 13 C 0.112 3.888 14 C -0.122 4.122 15 C 0.248 3.752 16 O -0.581 6.581 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.092 3.908 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.414 0.586 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.381 0.619 41 H 0.271 0.729 42 H 0.067 0.933 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.790 12.579 -4.258 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C 0.012 3.988 4 O -0.300 6.300 5 C -0.028 4.028 6 C -0.001 4.001 7 N -0.358 5.358 8 C 0.292 3.708 9 O -0.395 6.395 10 C 0.290 3.710 11 O -0.417 6.417 12 N -0.307 5.307 13 C -0.011 4.011 14 C -0.160 4.160 15 C 0.208 3.792 16 O -0.389 6.389 17 C -0.575 4.575 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.029 4.029 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.251 0.749 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.852 12.879 -3.636 20.746 hybrid contribution 0.707 -0.809 -1.231 1.634 sum -15.145 12.070 -4.867 19.969 Atomic orbital electron populations 1.23833 0.95547 1.02256 1.00240 1.22783 0.95677 0.98382 1.00047 1.21557 0.88786 0.95964 0.92468 1.88003 1.44674 1.36680 1.60597 1.22794 0.92687 0.88152 0.99147 1.21441 0.88823 0.91919 0.97939 1.45655 1.25639 1.39759 1.24726 1.20407 0.82208 0.83798 0.84423 1.90721 1.73621 1.53036 1.22091 1.19548 0.82143 0.84386 0.84895 1.90725 1.73876 1.54348 1.22750 1.48714 1.24017 1.37641 1.20340 1.22179 0.98248 0.96568 0.84072 1.22711 0.95750 0.96696 1.00802 1.19635 0.88594 0.85379 0.85606 1.86133 1.70361 1.30918 1.51526 1.21422 0.92756 1.12116 1.31216 0.91440 1.25092 0.97849 0.96175 0.94163 1.69707 1.30726 1.20865 1.31901 0.86441 0.83710 0.78399 0.78233 1.19979 1.21104 1.20018 1.23480 0.88461 0.89430 1.01549 0.88524 0.87727 0.86293 0.92752 0.92138 0.91325 0.92190 0.90137 0.89481 0.74909 0.91182 0.91750 0.90527 0.90352 0.76954 0.91919 0.91460 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 14.31 29.02 0.42 -0.82 16 2 C -0.15 -1.25 9.89 -36.03 -0.36 -1.61 16 3 C 0.09 0.69 6.35 36.01 0.23 0.92 16 4 O -0.38 -3.87 10.27 -35.23 -0.36 -4.23 16 5 C 0.05 0.38 6.07 37.16 0.23 0.61 16 6 C 0.12 1.25 6.06 -4.04 -0.02 1.23 16 7 N -0.70 -9.58 5.50 -60.73 -0.33 -9.92 16 8 C 0.51 8.89 7.86 -11.59 -0.09 8.79 16 9 O -0.52 -9.61 14.15 5.50 0.08 -9.53 16 10 C 0.51 10.48 7.92 -11.59 -0.09 10.39 16 11 O -0.54 -12.05 16.73 5.49 0.09 -11.96 16 12 N -0.58 -12.43 3.34 -170.81 -0.57 -13.00 16 13 C 0.11 2.20 5.50 -2.92 -0.02 2.19 16 14 C -0.12 -2.51 6.13 -24.90 -0.15 -2.66 16 15 C 0.25 6.06 0.87 -89.63 -0.08 5.98 16 16 O -0.58 -14.94 13.16 -35.23 -0.46 -15.41 16 17 C -0.54 -13.91 8.27 -34.44 -0.28 -14.20 16 18 H 0.07 1.71 7.79 -52.48 -0.41 1.30 16 19 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 20 N -0.89 -23.66 10.69 55.43 0.59 -23.07 16 21 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C 0.09 2.20 5.38 -2.53 -0.01 2.19 16 26 H 0.10 0.53 7.90 -52.49 -0.41 0.12 16 27 H 0.10 0.62 8.06 -52.49 -0.42 0.19 16 28 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 29 H 0.05 0.34 7.86 -51.93 -0.41 -0.07 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.41 5.48 7.94 -40.82 -0.32 5.15 16 36 H 0.07 1.40 7.59 -51.93 -0.39 1.00 16 37 H 0.06 1.16 7.70 -51.93 -0.40 0.76 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.08 1.50 8.03 -51.93 -0.42 1.09 16 40 H 0.38 9.96 7.56 45.56 0.34 10.30 16 41 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 43 H 0.09 2.42 7.32 -51.93 -0.38 2.04 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -30.30 365.60 -6.55 -36.84 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -5.74 Total: 14.79 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: -0.33 Total: 14.75 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.31 Total: -45.98 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.66 Total: -41.14 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.30 -6.55 -36.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118447671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.831 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds