Wall clock time and date at job start Fri Apr 10 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99905 * 2 1 4 4 O 1.42897 * 109.46713 * 135.00174 * 3 2 1 5 5 C 1.42907 * 113.99658 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46883 * 179.97438 * 5 4 3 7 7 N 1.46497 * 109.47076 * 65.00281 * 6 5 4 8 8 C 1.34774 * 120.00160 * 179.97438 * 7 6 5 9 9 O 1.21346 * 119.99798 * 359.97438 * 8 7 6 10 10 C 1.49448 * 120.00247 * 180.02562 * 8 7 6 11 11 O 1.21355 * 120.00006 * 359.97438 * 10 8 7 12 12 N 1.34774 * 120.00247 * 179.97438 * 10 8 7 13 13 C 1.47290 * 125.79121 * 359.97438 * 12 10 8 14 14 C 1.54325 * 107.30599 * 178.92556 * 13 12 10 15 15 C 1.55154 * 102.94303 * 337.81911 * 14 13 12 16 16 O 1.42902 * 111.00280 * 277.42723 * 15 14 13 17 17 C 1.50693 * 111.03939 * 153.59058 * 15 14 13 18 18 H 1.08004 * 120.00401 * 6.33015 * 17 15 14 19 19 C 1.37876 * 120.00383 * 186.33190 * 17 15 14 20 20 N 1.31512 * 119.99646 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00223 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47177 * 59.99714 * 21 19 17 23 23 H 1.48506 * 109.46953 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47102 * 299.99690 * 21 19 17 25 25 C 1.47425 * 125.65138 * 179.97438 * 12 10 8 26 26 H 1.07999 * 120.00101 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00037 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99836 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46830 * 15.00242 * 3 2 1 30 30 H 1.09002 * 109.47250 * 254.99977 * 3 2 1 31 31 H 1.09002 * 109.47197 * 60.00260 * 5 4 3 32 32 H 1.08992 * 109.47329 * 299.99766 * 5 4 3 33 33 H 1.08998 * 109.46939 * 304.99825 * 6 5 4 34 34 H 1.09001 * 109.46501 * 184.99908 * 6 5 4 35 35 H 0.97005 * 120.00064 * 359.97438 * 7 6 5 36 36 H 1.09004 * 109.85762 * 59.50172 * 13 12 10 37 37 H 1.08995 * 110.00297 * 298.43119 * 13 12 10 38 38 H 1.09002 * 110.72180 * 219.45147 * 14 13 12 39 39 H 1.08997 * 110.72163 * 96.18354 * 14 13 12 40 40 H 0.96703 * 114.00194 * 173.65090 * 16 15 14 41 41 H 0.97010 * 119.99834 * 180.02562 * 20 19 17 42 42 H 1.09002 * 110.36696 * 85.25946 * 25 12 10 43 43 H 1.08995 * 110.36608 * 323.04783 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2412 0.9526 5 6 3.9077 2.4353 1.0329 6 6 5.0099 2.2544 2.0786 7 7 5.9390 1.2128 1.6337 8 6 6.9967 0.8811 2.4002 9 8 7.1797 1.4455 3.4586 10 6 7.9448 -0.1812 1.9460 11 8 7.7621 -0.7453 0.8873 12 7 9.0029 -0.5125 2.7123 13 6 9.3457 0.0870 4.0133 14 6 10.6158 -0.6241 4.5260 15 6 10.5952 -1.9706 3.7555 16 8 9.7403 -2.9168 4.4004 17 6 11.9876 -2.5249 3.5976 18 1 12.8201 -2.0416 4.0874 19 6 12.1990 -3.6492 2.8279 20 7 11.1853 -4.2380 2.2319 21 14 13.9249 -4.3367 2.6329 22 1 14.4633 -4.7081 3.9660 23 1 13.8831 -5.5400 1.7636 24 1 14.8002 -3.3088 2.0144 25 6 10.0117 -1.5373 2.3875 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3854 2.1160 0.2660 30 1 2.4755 1.4868 -0.9927 31 1 3.2677 3.2694 1.3206 32 1 4.3579 2.6409 0.0618 33 1 4.5642 1.9619 3.0293 34 1 5.5494 3.1932 2.2037 35 1 5.7929 0.7618 0.7874 36 1 8.5271 -0.0629 4.7173 37 1 9.5405 1.1526 3.8930 38 1 10.5553 -0.7939 5.6010 39 1 11.5074 -0.0497 4.2749 40 1 9.6188 -3.7385 3.9053 41 1 11.3340 -5.0293 1.6907 42 1 10.7944 -1.1132 1.7584 43 1 9.5435 -2.3859 1.8888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118447671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:05 Heat of formation + Delta-G solvation = -160.594269 kcal Electronic energy + Delta-G solvation = -25968.242055 eV Core-core repulsion = 22013.558050 eV Total energy + Delta-G solvation = -3954.684005 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79108 -40.10588 -39.14732 -38.84437 -36.51203 -35.79030 -34.56698 -34.24159 -31.95040 -30.80945 -29.68013 -27.69660 -26.78166 -25.53477 -23.96324 -22.77224 -21.56310 -21.07991 -20.75471 -19.15553 -18.76269 -18.11186 -17.92998 -17.28872 -17.18509 -17.06326 -16.36312 -16.35344 -16.12604 -15.78251 -15.50904 -14.87162 -14.72949 -14.66549 -14.42376 -13.95515 -13.94205 -13.53753 -13.47944 -13.31933 -13.13572 -12.81543 -12.68141 -12.53089 -12.38345 -12.35156 -12.26452 -12.10295 -11.85847 -11.21213 -10.92189 -10.73458 -10.56797 -10.36373 -10.30373 -10.24414 -9.64432 -8.24640 -6.41766 0.34635 1.23362 1.28699 1.45499 1.46659 1.54244 2.12735 2.37882 2.51877 2.77928 3.01147 3.33624 3.77592 3.81377 4.05963 4.10323 4.14653 4.15836 4.22504 4.32740 4.44294 4.45226 4.61015 4.62100 4.66353 4.73664 4.80721 4.97693 4.98554 5.06096 5.13291 5.17849 5.33600 5.43639 5.66102 5.71659 5.74460 5.97365 6.07125 6.21775 6.37072 6.61615 6.68111 6.92613 7.26529 7.34852 8.80800 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.002687 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.235856 B =10417.551078 C =11149.913348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.179 4.179 3 C 0.087 3.913 4 O -0.411 6.411 5 C 0.052 3.948 6 C 0.118 3.882 7 N -0.686 5.686 8 C 0.516 3.484 9 O -0.531 6.531 10 C 0.500 3.500 11 O -0.563 6.563 12 N -0.583 5.583 13 C 0.119 3.881 14 C -0.115 4.115 15 C 0.232 3.768 16 O -0.588 6.588 17 C -0.555 4.555 18 H 0.071 0.929 19 C 0.027 3.973 20 N -0.915 5.915 21 Si 0.966 3.034 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.105 3.895 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.417 0.583 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.374 0.626 41 H 0.270 0.730 42 H 0.057 0.943 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.418 14.529 -4.194 22.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.197 4.197 3 C 0.012 3.988 4 O -0.331 6.331 5 C -0.024 4.024 6 C -0.005 4.005 7 N -0.340 5.340 8 C 0.296 3.704 9 O -0.408 6.408 10 C 0.284 3.716 11 O -0.443 6.443 12 N -0.315 5.315 13 C -0.002 4.002 14 C -0.153 4.153 15 C 0.192 3.808 16 O -0.396 6.396 17 C -0.593 4.593 18 H 0.089 0.911 19 C -0.174 4.174 20 N -0.554 5.554 21 Si 0.791 3.209 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.194 1.194 25 C -0.017 4.017 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.254 0.746 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.223 0.777 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.515 14.866 -3.573 22.506 hybrid contribution 0.791 -1.417 -1.289 2.072 sum -15.724 13.449 -4.862 21.255 Atomic orbital electron populations 1.24040 0.95082 1.03387 0.98085 1.22847 0.96405 0.98294 1.02144 1.21671 0.88582 0.96100 0.92495 1.87959 1.45605 1.38063 1.61464 1.22883 0.92226 0.88300 0.99035 1.21757 0.88944 0.91258 0.98492 1.45718 1.24583 1.39674 1.23995 1.19743 0.82684 0.83203 0.84726 1.90714 1.74151 1.53405 1.22522 1.20280 0.82178 0.84780 0.84370 1.90700 1.74411 1.55385 1.23825 1.48766 1.24126 1.37413 1.21228 1.22204 0.97615 0.97455 0.82956 1.22727 0.96986 0.94648 1.00925 1.19878 0.87913 0.86554 0.86449 1.86126 1.70784 1.30907 1.51747 1.21724 0.93570 1.12599 1.31437 0.91111 1.25834 1.01225 0.96510 0.93860 1.69825 1.32348 1.21011 1.32210 0.85482 0.79598 0.77670 0.78123 1.19617 1.21124 1.19358 1.23059 0.88538 0.89003 1.01074 0.86814 0.87164 0.88036 0.90846 0.91286 0.88318 0.90808 0.90918 0.87678 0.74644 0.91371 0.89502 0.89629 0.88773 0.77742 0.92058 0.92499 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 14.31 67.78 0.97 -1.07 16 2 C -0.18 -2.85 9.89 25.65 0.25 -2.60 16 3 C 0.09 1.21 6.35 71.24 0.45 1.66 16 4 O -0.41 -7.72 10.27 -148.98 -1.53 -9.25 16 5 C 0.05 0.67 6.07 71.98 0.44 1.10 16 6 C 0.12 2.15 6.06 86.38 0.52 2.67 16 7 N -0.69 -17.84 5.50 -464.42 -2.55 -20.39 16 8 C 0.52 17.52 7.86 87.27 0.69 18.21 16 9 O -0.53 -18.86 14.15 -3.23 -0.05 -18.90 16 10 C 0.50 20.76 7.92 87.27 0.69 21.45 16 11 O -0.56 -25.74 16.73 -3.26 -0.05 -25.79 16 12 N -0.58 -25.35 3.34 -812.69 -2.71 -28.06 16 13 C 0.12 4.57 5.50 86.68 0.48 5.05 16 14 C -0.12 -4.63 6.13 31.78 0.19 -4.43 16 15 C 0.23 11.43 0.87 -10.15 -0.01 11.42 16 16 O -0.59 -30.81 13.16 -148.98 -1.96 -32.78 16 17 C -0.56 -28.82 8.27 25.60 0.21 -28.61 16 18 H 0.07 3.54 7.79 -2.91 -0.02 3.52 16 19 C 0.03 1.39 5.29 84.65 0.45 1.84 16 20 N -0.92 -49.50 10.69 21.45 0.23 -49.27 16 21 Si 0.97 41.49 29.54 68.60 2.03 43.51 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 C 0.11 5.20 5.38 86.85 0.47 5.67 16 26 H 0.11 0.97 7.90 -2.91 -0.02 0.94 16 27 H 0.11 1.16 8.06 -2.91 -0.02 1.14 16 28 H 0.10 1.90 8.06 -2.91 -0.02 1.88 16 29 H 0.07 0.71 7.86 -2.39 -0.02 0.70 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.42 10.64 7.94 -92.70 -0.74 9.91 16 36 H 0.07 2.64 7.59 -2.38 -0.02 2.63 16 37 H 0.09 2.95 7.70 -2.39 -0.02 2.93 16 38 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.09 3.46 8.03 -2.39 -0.02 3.44 16 40 H 0.37 20.27 7.56 -74.06 -0.56 19.71 16 41 H 0.27 14.05 8.31 -92.70 -0.77 13.28 16 42 H 0.06 2.86 8.03 -2.39 -0.02 2.84 16 43 H 0.06 3.20 7.32 -2.39 -0.02 3.18 16 Total: -1.00 -65.56 365.60 -1.06 -66.62 By element: Atomic # 1 Polarization: 42.22 SS G_CDS: -0.27 Total: 41.95 kcal Atomic # 6 Polarization: 26.55 SS G_CDS: 5.80 Total: 32.36 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -5.03 Total: -97.72 kcal Atomic # 8 Polarization: -83.13 SS G_CDS: -3.59 Total: -86.72 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -65.56 -1.06 -66.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118447671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.972 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds