Wall clock time and date at job start Fri Apr 10 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00191 * 2 1 4 4 H 1.48504 * 109.46773 * 269.99988 * 3 2 1 5 5 H 1.48499 * 109.47184 * 29.99604 * 3 2 1 6 6 H 1.48494 * 109.47329 * 149.99588 * 3 2 1 7 7 C 1.38949 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99930 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00063 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99815 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00620 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99796 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47143 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99855 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46907 * 180.02562 * 14 13 12 16 16 N 1.46500 * 109.47136 * 179.97438 * 15 14 13 17 17 C 1.34782 * 119.99979 * 180.02562 * 16 15 14 18 18 O 1.21283 * 119.99955 * 359.97438 * 17 16 15 19 19 C 1.50693 * 119.99642 * 180.02562 * 17 16 15 20 20 N 1.46505 * 109.47069 * 179.97438 * 19 17 16 21 21 C 1.36596 * 127.12086 * 265.02444 * 20 19 17 22 22 N 1.30338 * 107.28065 * 179.97438 * 21 20 19 23 23 N 1.28534 * 109.99250 * 359.97438 * 22 21 20 24 24 C 1.31034 * 109.86009 * 0.02562 * 23 22 21 25 25 O 1.35534 * 126.44360 * 179.97438 * 24 23 22 26 26 H 0.96998 * 120.00335 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99686 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46913 * 60.00017 * 12 10 9 29 29 H 1.08997 * 109.47179 * 299.99626 * 12 10 9 30 30 H 1.00902 * 110.99536 * 303.95122 * 13 12 10 31 31 H 1.09001 * 109.46771 * 60.00099 * 14 13 12 32 32 H 1.08996 * 109.46820 * 299.99893 * 14 13 12 33 33 H 1.08996 * 109.47239 * 59.99703 * 15 14 13 34 34 H 1.09001 * 109.47167 * 300.00046 * 15 14 13 35 35 H 0.96998 * 120.00075 * 0.02562 * 16 15 14 36 36 H 1.08995 * 109.47747 * 60.00241 * 19 17 16 37 37 H 1.08995 * 109.47504 * 299.99521 * 19 17 16 38 38 H 1.07995 * 126.36031 * 359.97438 * 21 20 19 39 39 H 0.96696 * 113.99864 * 90.02635 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2436 -4.8630 0.0011 13 7 2.1982 -5.9795 0.0004 14 6 1.4978 -7.2709 0.0003 15 6 2.5227 -8.4069 0.0002 16 7 1.8243 -9.6947 0.0007 17 6 2.5292 -10.8435 0.0012 18 8 3.7415 -10.8112 0.0008 19 6 1.8107 -12.1682 0.0012 20 7 2.7920 -13.2560 0.0012 21 6 3.2741 -13.9313 -1.0838 22 7 4.1242 -14.8156 -0.6432 23 7 4.2099 -14.7429 0.6372 24 6 3.4137 -13.8030 1.0840 25 8 3.2407 -13.4427 2.3791 26 1 -0.4850 0.8400 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6166 -4.9208 -0.8886 29 1 0.6174 -4.9205 0.8914 30 1 2.8324 -5.9125 -0.7815 31 1 0.8726 -7.3450 -0.8895 32 1 0.8734 -7.3455 0.8905 33 1 3.1477 -8.3325 0.8901 34 1 3.1476 -8.3324 -0.8898 35 1 0.8547 -9.7206 0.0007 36 1 1.1862 -12.2429 -0.8889 37 1 1.1855 -12.2425 0.8910 38 1 3.0014 -13.7637 -2.1153 39 1 3.8434 -12.7481 2.6779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126021806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:23 Heat of formation + Delta-G solvation = -51.059103 kcal Electronic energy + Delta-G solvation = -24143.177722 eV Core-core repulsion = 20121.995925 eV Total energy + Delta-G solvation = -4021.181796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.138 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.08378 -40.88676 -40.15358 -38.65389 -37.56567 -36.04740 -35.84405 -35.30131 -33.27680 -31.20621 -30.90232 -29.22437 -27.46817 -25.56991 -23.71577 -23.47657 -23.04883 -21.88610 -21.10629 -19.98076 -19.89410 -18.67843 -18.26679 -17.70440 -17.27186 -17.21966 -16.86525 -16.48059 -16.41779 -16.23894 -15.83979 -15.49618 -15.40766 -14.98455 -14.90865 -14.37325 -14.10298 -13.55265 -13.46326 -13.42215 -13.30976 -12.94203 -12.78012 -12.59839 -12.43742 -12.40365 -12.13112 -12.04148 -11.51575 -11.32075 -10.93260 -10.37191 -10.30813 -10.26113 -10.02113 -9.38115 -8.47746 -5.96183 0.44516 1.13345 1.36931 1.37483 1.42073 1.54158 1.67978 1.94472 2.05024 2.29527 2.78585 3.00091 3.19929 3.46488 3.59365 3.63515 3.76094 3.88899 4.11015 4.12907 4.22516 4.31494 4.46531 4.51118 4.61528 4.61893 4.83956 4.88571 4.93426 5.23026 5.40590 5.53713 5.84431 6.06856 6.29584 6.31955 6.40444 6.59557 7.06191 7.12310 7.55937 7.56329 8.11634 8.69382 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.048934 B = 0.001663 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.065987 B =16836.342531 C =16941.326424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.572 5.572 10 C 0.434 3.566 11 O -0.627 6.627 12 C 0.069 3.931 13 N -0.689 5.689 14 C 0.057 3.943 15 C 0.129 3.871 16 N -0.700 5.700 17 C 0.496 3.504 18 O -0.581 6.581 19 C 0.092 3.908 20 N -0.472 5.472 21 C 0.191 3.809 22 N -0.331 5.331 23 N -0.336 5.336 24 C 0.357 3.643 25 O -0.441 6.441 26 H 0.278 0.722 27 H 0.398 0.602 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.345 0.655 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.425 0.575 36 H 0.183 0.817 37 H 0.158 0.842 38 H 0.271 0.729 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 -23.435 -2.015 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.221 3.779 11 O -0.514 6.514 12 C -0.063 4.063 13 N -0.322 5.322 14 C -0.072 4.072 15 C 0.004 3.996 16 N -0.354 5.354 17 C 0.281 3.719 18 O -0.460 6.460 19 C -0.033 4.033 20 N -0.175 5.175 21 C -0.096 4.096 22 N -0.170 5.170 23 N -0.185 5.185 24 C 0.051 3.949 25 O -0.243 6.243 26 H 0.087 0.913 27 H 0.232 0.768 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.164 0.836 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.264 0.736 36 H 0.200 0.800 37 H 0.175 0.825 38 H 0.286 0.714 39 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -6.002 -24.712 -1.149 25.457 hybrid contribution -1.031 2.571 -0.626 2.840 sum -7.033 -22.141 -1.776 23.299 Atomic orbital electron populations 1.69654 1.06699 1.29306 1.50220 1.25993 0.96549 1.02288 0.96264 0.84956 0.77872 0.77056 0.78637 1.19631 1.19507 1.20010 1.19650 0.92682 0.84150 1.50028 0.90495 1.41919 1.09381 1.04662 1.64975 1.20999 0.88287 0.86381 0.82213 1.90507 1.16103 1.88013 1.56726 1.21519 0.93692 0.87405 1.03690 1.59903 1.19484 1.01038 1.51772 1.22099 0.95246 0.86672 1.03178 1.21046 0.94962 0.81738 1.01882 1.45560 1.11544 1.04277 1.73978 1.21216 0.87753 0.86912 0.76002 1.90834 1.16183 1.88015 1.51001 1.22123 0.89271 0.79995 1.11909 1.46579 1.35251 1.28619 1.07034 1.27297 0.94758 0.91970 0.95592 1.74124 1.18558 1.22192 1.02144 1.74496 1.19441 1.19791 1.04800 1.22217 0.94739 0.94565 0.83387 1.84799 1.62288 1.61119 1.16112 0.91268 0.76808 0.90781 0.87210 0.83625 0.92080 0.88625 0.92479 0.92545 0.73644 0.79957 0.82456 0.71372 0.71567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.94 13.05 21.66 0.28 -47.66 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 42.02 29.55 68.60 2.03 44.05 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.34 -18.62 9.68 84.04 0.81 -17.80 16 8 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 9 N -0.57 -28.07 5.29 -306.99 -1.62 -29.69 16 10 C 0.43 19.51 7.82 87.66 0.69 20.20 16 11 O -0.63 -33.83 15.78 -3.06 -0.05 -33.88 16 12 C 0.07 2.03 6.17 85.56 0.53 2.56 16 13 N -0.69 -18.30 6.13 -517.92 -3.17 -21.47 16 14 C 0.06 0.84 5.80 86.30 0.50 1.34 16 15 C 0.13 1.98 5.93 86.38 0.51 2.49 16 16 N -0.70 -5.02 5.56 -463.06 -2.57 -7.59 16 17 C 0.50 5.36 7.90 87.65 0.69 6.05 16 18 O -0.58 -13.49 16.43 -3.04 -0.05 -13.54 16 19 C 0.09 0.21 6.69 85.63 0.57 0.79 16 20 N -0.47 -5.83 2.29 -647.68 -1.48 -7.31 16 21 C 0.19 2.59 12.80 179.81 2.30 4.89 16 22 N -0.33 -7.90 12.18 -59.41 -0.72 -8.62 16 23 N -0.34 -8.94 12.22 -173.67 -2.12 -11.06 16 24 C 0.36 7.00 9.22 179.70 1.66 8.66 16 25 O -0.44 -6.66 13.62 -88.38 -1.20 -7.86 16 26 H 0.28 13.59 8.31 -92.71 -0.77 12.81 16 27 H 0.40 18.24 7.90 -92.71 -0.73 17.51 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.35 10.03 8.43 -89.69 -0.76 9.28 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.43 -0.53 8.47 -92.71 -0.79 -1.32 16 36 H 0.18 -1.33 8.14 -2.39 -0.02 -1.34 16 37 H 0.16 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.27 0.59 8.06 -2.91 -0.02 0.57 16 39 H 0.42 3.64 9.06 -74.06 -0.67 2.97 16 Total: -1.00 -90.40 353.44 -3.75 -94.15 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -1.79 Total: 21.42 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 8.73 Total: 29.07 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -11.41 Total: -133.41 kcal Atomic # 8 Polarization: -53.98 SS G_CDS: -1.30 Total: -55.28 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -90.40 -3.75 -94.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126021806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.091 kcal (2) G-P(sol) polarization free energy of solvation -90.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds