Wall clock time and date at job start Fri Apr 10 2020 18:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35724 * 116.99969 * 2 1 4 4 C 1.41856 * 126.78991 * 179.97438 * 3 2 1 5 5 C 1.36662 * 103.81613 * 179.97438 * 4 3 2 6 6 C 1.47533 * 126.88094 * 179.97438 * 5 4 3 7 7 O 1.21583 * 120.00430 * 0.02562 * 6 5 4 8 8 N 1.34784 * 120.00117 * 180.02562 * 6 5 4 9 9 C 1.46493 * 119.99864 * 179.72963 * 8 6 5 10 10 C 1.53001 * 109.47084 * 180.02562 * 9 8 6 11 11 N 1.46896 * 109.47228 * 179.97438 * 10 9 8 12 12 C 1.46902 * 110.99936 * 179.97438 * 11 10 9 13 13 C 1.50708 * 109.47256 * 180.02562 * 12 11 10 14 14 O 1.21290 * 119.99529 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00019 * 180.02562 * 13 12 11 16 16 C 1.37096 * 119.99827 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00075 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99901 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99875 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99951 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46982 * 60.00100 * 20 18 16 22 22 H 1.48498 * 109.47051 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47239 * 300.00525 * 20 18 16 24 24 O 1.34667 * 106.23873 * 0.23276 * 5 4 3 25 25 N 1.20874 * 111.63360 * 359.58250 * 24 5 4 26 26 H 1.09002 * 109.46622 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47535 * 300.00223 * 1 2 3 28 28 H 1.09000 * 109.46929 * 60.00342 * 1 2 3 29 29 H 1.07999 * 128.08629 * 359.97438 * 4 3 2 30 30 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 31 31 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 32 32 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 33 33 H 1.09007 * 109.46593 * 299.99743 * 10 9 8 34 34 H 1.08993 * 109.47372 * 59.99485 * 10 9 8 35 35 H 1.00895 * 111.00384 * 56.04663 * 11 10 9 36 36 H 1.09003 * 109.47131 * 299.99623 * 12 11 10 37 37 H 1.08997 * 109.47455 * 59.99689 * 12 11 10 38 38 H 0.96995 * 120.00139 * 359.97438 * 15 13 12 39 39 H 0.97000 * 119.99414 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 3.4431 1.4505 0.0005 5 6 3.5391 2.8138 -0.0003 6 6 4.7784 3.6142 0.0003 7 8 5.8604 3.0595 0.0012 8 7 4.7113 4.9603 -0.0002 9 6 5.9419 5.7550 0.0064 10 6 5.5878 7.2435 0.0051 11 7 6.8218 8.0404 0.0123 12 6 6.5200 9.4781 0.0106 13 6 7.8074 10.2617 0.0175 14 8 8.8715 9.6796 0.0237 15 7 7.7762 11.6090 0.0177 16 6 8.9473 12.3218 0.0235 17 1 9.8948 11.8036 0.0282 18 6 8.9151 13.7110 0.0232 19 7 7.7622 14.3415 0.0170 20 14 10.5108 14.6821 0.0318 21 1 11.3041 14.3414 -1.1765 22 1 10.2057 16.1355 0.0294 23 1 11.2911 14.3415 1.2484 24 8 2.2758 3.2802 0.0040 25 7 1.4685 2.3805 -0.0009 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.2441 0.7261 0.0014 30 1 3.8481 5.4028 -0.0005 31 1 6.5211 5.5206 0.8996 32 1 6.5308 5.5204 -0.8804 33 1 5.0085 7.4783 -0.8880 34 1 4.9992 7.4778 0.8920 35 1 7.4154 7.7950 -0.7658 36 1 5.9478 9.7282 -0.8828 37 1 5.9373 9.7281 0.8971 38 1 6.9252 12.0744 0.0131 39 1 7.7398 15.3112 0.0164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126032456.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:27 Heat of formation + Delta-G solvation = -33.530234 kcal Electronic energy + Delta-G solvation = -23874.108361 eV Core-core repulsion = 19821.393922 eV Total energy + Delta-G solvation = -4052.714439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.47155 -40.05542 -39.38648 -38.34535 -36.48126 -34.60612 -33.81663 -33.69007 -32.38522 -31.25113 -29.52930 -28.18004 -26.33003 -24.58302 -23.85336 -23.47458 -22.19769 -21.26013 -19.51566 -19.25356 -18.45278 -17.92245 -17.36940 -16.69489 -16.50919 -16.27111 -16.05147 -15.87158 -15.40614 -15.23199 -14.64065 -14.49495 -14.16446 -13.97984 -13.92926 -13.45953 -13.22289 -12.77136 -12.50194 -12.43396 -12.02538 -11.92065 -11.57490 -11.50767 -11.48879 -11.02219 -10.79701 -10.44814 -10.36812 -10.22558 -9.86116 -9.52197 -9.51048 -8.53359 -8.16622 -7.98113 -6.43137 -3.84060 0.27647 1.59570 2.07876 2.12171 2.55018 2.86435 3.19817 3.25709 3.30248 3.57177 3.88277 4.08977 4.23831 4.31864 4.41716 4.52905 4.61070 4.69566 4.77869 4.91176 4.94674 5.13933 5.18310 5.24014 5.32081 5.67990 5.68463 5.80659 5.90012 5.92681 6.22329 6.37529 6.85711 7.06180 7.47958 7.52941 7.53995 7.60897 8.04281 8.59263 9.16256 9.52117 10.03394 10.74421 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.053663 B = 0.001622 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.646394 B =17254.869228 C =17743.431116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.205 3.795 4 C -0.152 4.152 5 C -0.057 4.057 6 C 0.605 3.395 7 O -0.503 6.503 8 N -0.709 5.709 9 C 0.118 3.882 10 C 0.048 3.952 11 N -0.665 5.665 12 C 0.052 3.948 13 C 0.439 3.561 14 O -0.582 6.582 15 N -0.562 5.562 16 C -0.301 4.301 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 O 0.118 5.882 25 N -0.388 5.388 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.192 0.808 30 H 0.408 0.592 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.353 0.647 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.392 0.608 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.271 -23.085 -0.969 28.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.008 3.992 4 C -0.174 4.174 5 C -0.123 4.123 6 C 0.388 3.612 7 O -0.378 6.378 8 N -0.361 5.361 9 C -0.005 4.005 10 C -0.083 4.083 11 N -0.298 5.298 12 C -0.080 4.080 13 C 0.224 3.776 14 O -0.467 6.467 15 N -0.199 5.199 16 C -0.431 4.431 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 O 0.051 5.949 25 N -0.112 5.112 26 H 0.127 0.873 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.209 0.791 30 H 0.244 0.756 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.173 0.827 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.226 0.774 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.858 -23.573 -0.289 28.983 hybrid contribution -0.264 0.807 -0.891 1.230 sum -17.122 -22.767 -1.180 28.511 Atomic orbital electron populations 1.23132 0.76352 1.04457 1.02555 1.86233 1.22929 1.20258 1.89248 1.21908 0.90643 0.85869 1.00809 1.22211 0.94506 0.94981 1.05750 1.24049 0.87020 0.93884 1.07383 1.16390 0.85087 0.81923 0.77839 1.90929 1.26399 1.71153 1.49324 1.45780 1.11331 1.05267 1.73728 1.21451 0.85231 0.89633 1.04173 1.22087 0.93169 0.91611 1.01385 1.59937 1.14545 1.03452 1.51890 1.21674 0.97206 0.87748 1.01399 1.19766 0.90018 0.83064 0.84704 1.90534 1.31360 1.69373 1.55397 1.41843 1.09549 1.04235 1.64264 1.19669 0.87097 0.88520 1.47782 0.87918 1.25263 0.98533 0.96836 0.97221 1.69603 1.24672 1.09570 1.50441 0.85909 0.81206 0.77949 0.79108 1.19906 1.20980 1.19850 1.84952 1.11747 1.29705 1.68492 1.74011 1.15715 0.96735 1.24707 0.87346 0.92008 0.92030 0.79105 0.75648 0.89398 0.90540 0.94613 0.90178 0.82742 0.93632 0.89391 0.77442 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.73 101.05 1.08 1.24 16 2 O -0.28 -2.32 10.57 -18.88 -0.20 -2.52 16 3 C 0.20 1.88 8.00 -16.71 -0.13 1.74 16 4 C -0.15 -1.30 10.97 -38.77 -0.43 -1.73 16 5 C -0.06 -0.50 7.29 -36.36 -0.26 -0.77 16 6 C 0.61 5.99 7.82 -12.47 -0.10 5.90 16 7 O -0.50 -6.67 16.91 5.29 0.09 -6.58 16 8 N -0.71 -5.72 5.55 -61.35 -0.34 -6.06 16 9 C 0.12 1.15 5.93 -4.04 -0.02 1.12 16 10 C 0.05 0.48 5.80 -3.83 -0.02 0.46 16 11 N -0.66 -9.81 6.13 -115.05 -0.70 -10.52 16 12 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 13 C 0.44 10.10 7.82 -10.98 -0.09 10.01 16 14 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 15 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 16 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 17 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 20 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 O 0.12 1.02 11.03 15.49 0.17 1.19 16 25 N -0.39 -3.70 11.50 30.47 0.35 -3.35 16 26 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.19 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.41 2.29 8.30 -40.82 -0.34 1.95 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.35 5.39 8.43 -39.29 -0.33 5.06 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -33.52 353.80 -4.54 -38.06 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.73 Total: 10.74 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -0.24 Total: 10.86 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.03 Total: -57.45 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.15 Total: -23.38 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.52 -4.54 -38.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126032456.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.531 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds