Wall clock time and date at job start Fri Apr 10 2020 18:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30884 * 122.98069 * 2 1 4 4 C 1.30229 * 117.25860 * 179.97438 * 3 2 1 5 5 N 1.37844 * 124.74583 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00028 * 0.02732 * 5 4 3 7 7 C 1.46498 * 120.00238 * 180.02562 * 5 4 3 8 8 S 1.70920 * 110.50989 * 359.97438 * 4 3 2 9 9 C 1.36699 * 122.98733 * 179.97438 * 2 1 3 10 10 C 1.46221 * 126.11172 * 0.02562 * 9 2 1 11 11 O 1.21757 * 119.99864 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00266 * 180.02562 * 10 9 2 13 13 C 1.46507 * 120.00119 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47006 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47193 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47480 * 180.02562 * 15 14 13 17 17 C 1.36934 * 120.00162 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99577 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00397 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00429 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47092 * 90.00062 * 21 19 17 23 23 H 1.48499 * 109.47293 * 210.00027 * 21 19 17 24 24 H 1.48501 * 109.47396 * 330.00578 * 21 19 17 25 25 H 1.09000 * 109.47001 * 90.02751 * 1 2 3 26 26 H 1.09003 * 109.47166 * 210.02487 * 1 2 3 27 27 H 1.09001 * 109.47746 * 330.02618 * 1 2 3 28 28 H 1.08995 * 109.47607 * 59.99548 * 6 5 4 29 29 H 1.09003 * 109.47571 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47036 * 299.99518 * 6 5 4 31 31 H 1.08998 * 109.47378 * 89.99932 * 7 5 4 32 32 H 1.09002 * 109.47409 * 210.00324 * 7 5 4 33 33 H 1.09006 * 109.46774 * 330.00184 * 7 5 4 34 34 H 0.96999 * 120.00604 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.46600 * 299.99280 * 13 12 10 36 36 H 1.08998 * 109.47376 * 59.98984 * 13 12 10 37 37 H 1.09001 * 109.47718 * 299.99417 * 14 13 12 38 38 H 1.09006 * 109.47344 * 59.99804 * 14 13 12 39 39 H 1.09001 * 109.47298 * 300.00111 * 15 14 13 40 40 H 1.08998 * 109.46954 * 59.99595 * 15 14 13 41 41 H 0.96999 * 119.99865 * 359.97438 * 16 15 14 42 42 H 0.96999 * 120.00505 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2194 1.0979 0.0000 4 6 3.5153 0.9681 0.0005 5 7 4.4099 2.0168 0.0001 6 6 3.9201 3.3974 -0.0004 7 6 5.8505 1.7507 0.0002 8 16 3.9515 -0.6845 0.0018 9 6 2.2512 -1.1466 0.0005 10 6 1.7296 -2.5126 0.0006 11 8 0.5273 -2.7051 0.0007 12 7 2.5795 -3.5586 0.0016 13 6 2.0568 -4.9272 0.0012 14 6 3.2224 -5.9183 0.0019 15 6 2.6766 -7.3476 0.0021 16 7 3.7926 -8.2966 0.0034 17 6 3.5461 -9.6436 0.0032 18 1 2.5287 -10.0063 0.0025 19 6 4.6035 -10.5428 0.0040 20 7 5.8433 -10.1008 0.0054 21 14 4.2672 -12.3802 0.0045 22 1 4.1786 -12.8676 -1.3956 23 1 5.3704 -13.0853 0.7052 24 1 2.9850 -12.6486 0.7039 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 3.3144 3.5685 0.8894 29 1 4.7671 4.0835 -0.0012 30 1 3.3144 3.5677 -0.8905 31 1 6.2078 1.6842 -1.0274 32 1 6.3695 2.5600 0.5137 33 1 6.0461 0.8096 0.5144 34 1 3.5373 -3.4053 0.0020 35 1 1.4463 -5.0832 0.8905 36 1 1.4480 -5.0834 -0.8894 37 1 3.8327 -5.7622 -0.8876 38 1 3.8315 -5.7622 0.8924 39 1 2.0665 -7.5035 0.8918 40 1 2.0673 -7.5039 -0.8881 41 1 4.7063 -7.9708 0.0037 42 1 6.5823 -10.7290 0.0063 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167733911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:53 Heat of formation + Delta-G solvation = 22.410029 kcal Electronic energy + Delta-G solvation = -22450.040114 eV Core-core repulsion = 18978.337393 eV Total energy + Delta-G solvation = -3471.702721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.42324 -39.28406 -37.26737 -35.95615 -34.31721 -32.04256 -31.49480 -29.83356 -28.93774 -28.13115 -26.79765 -25.13103 -22.85644 -22.49606 -21.39504 -21.13616 -19.49799 -18.52246 -17.29403 -16.89342 -16.52648 -16.27475 -15.60338 -15.48658 -15.09211 -14.70367 -14.50904 -13.97212 -13.89026 -13.60566 -13.35687 -13.25306 -13.23350 -12.99821 -12.65562 -12.60726 -12.54430 -12.36947 -11.63466 -11.41206 -10.93505 -10.90899 -10.76101 -10.60120 -10.27905 -10.19123 -10.06103 -9.77661 -9.66292 -9.52194 -9.03405 -8.86643 -7.95741 -6.92111 -5.76079 -3.04842 0.29153 0.70007 1.40342 2.28240 2.38218 3.20541 3.21251 3.44973 3.50014 3.51861 4.03771 4.44221 4.60283 4.63884 4.68832 4.85238 4.98899 5.00393 5.05277 5.20452 5.27916 5.34373 5.51852 5.56875 5.58877 5.65463 5.70272 5.99860 6.06312 6.09526 6.18044 6.22348 6.34141 6.44125 6.50032 6.81147 6.85485 7.43409 7.58588 7.71440 8.19644 8.42981 9.54017 10.11356 10.46092 11.46996 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.024325 B = 0.002190 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.816029 B =12780.635307 C =13889.797189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.204 3.796 3 N -0.553 5.553 4 C 0.326 3.674 5 N -0.580 5.580 6 C 0.103 3.897 7 C 0.086 3.914 8 S 0.131 5.869 9 C -0.351 4.351 10 C 0.603 3.397 11 O -0.534 6.534 12 N -0.725 5.725 13 C 0.125 3.875 14 C -0.138 4.138 15 C 0.157 3.843 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.071 0.929 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.396 0.604 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.383 0.617 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 30.631 0.103 30.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.065 3.935 3 N -0.278 5.278 4 C -0.041 4.041 5 N -0.298 5.298 6 C -0.041 4.041 7 C -0.057 4.057 8 S 0.382 5.618 9 C -0.477 4.477 10 C 0.390 3.610 11 O -0.414 6.414 12 N -0.376 5.376 13 C 0.001 3.999 14 C -0.177 4.177 15 C 0.029 3.971 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 H 0.100 0.900 26 H 0.120 0.880 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.230 0.770 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.217 0.783 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.229 30.446 0.117 30.471 hybrid contribution 0.020 -0.717 -0.039 0.718 sum -1.210 29.729 0.078 29.754 Atomic orbital electron populations 1.20670 0.86039 1.04404 1.03709 1.20541 0.97840 0.84273 0.90819 1.66066 1.02111 1.31645 1.28006 1.23678 0.90890 0.92783 0.96787 1.45742 1.03952 1.03539 1.76552 1.21710 1.00111 0.79428 1.02875 1.21971 0.77732 1.03124 1.02833 1.83757 1.06896 0.98304 1.72862 1.25014 0.94240 0.98620 1.29779 1.16496 0.86011 0.82343 0.76167 1.90784 1.14284 1.85076 1.51249 1.45951 1.09464 1.06500 1.75697 1.21378 0.96905 0.78926 1.02676 1.21955 0.97335 0.95647 1.02731 1.20519 0.91676 0.86692 0.98261 1.42341 1.03678 1.02192 1.89602 1.19253 0.92686 0.82549 1.42503 0.91070 1.24758 0.95220 0.98123 1.03075 1.69661 0.97426 1.33357 1.57933 0.86158 0.76995 0.85338 0.77525 1.21705 1.21776 1.20713 0.90023 0.87967 0.90938 0.91770 0.90309 0.91764 0.91576 0.89506 0.90840 0.77028 0.91107 0.91112 0.91296 0.91299 0.95980 0.95987 0.78311 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.71 36.00 0.35 -0.64 16 2 C 0.20 2.57 6.83 -83.55 -0.57 2.00 16 3 N -0.55 -6.59 10.05 -10.94 -0.11 -6.70 16 4 C 0.33 3.28 7.72 -87.98 -0.68 2.60 16 5 N -0.58 -4.08 3.36 -192.01 -0.64 -4.73 16 6 C 0.10 0.53 10.41 59.85 0.62 1.16 16 7 C 0.09 0.33 10.36 59.85 0.62 0.95 16 8 S 0.13 1.26 20.74 -107.50 -2.23 -0.97 16 9 C -0.35 -4.47 6.49 -36.93 -0.24 -4.71 16 10 C 0.60 8.72 7.76 -13.06 -0.10 8.62 16 11 O -0.53 -9.02 14.30 5.14 0.07 -8.95 16 12 N -0.73 -9.56 5.55 -61.76 -0.34 -9.90 16 13 C 0.12 1.78 5.67 -4.04 -0.02 1.76 16 14 C -0.14 -2.18 5.44 -26.73 -0.15 -2.33 16 15 C 0.16 3.17 6.26 -4.04 -0.03 3.14 16 16 N -0.73 -18.87 5.60 -59.91 -0.34 -19.20 16 17 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 18 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 21 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.10 1.27 6.04 -51.93 -0.31 0.96 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.18 7.79 -51.93 -0.40 -0.22 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.14 7.92 -51.93 -0.41 -0.27 16 33 H 0.07 0.30 7.01 -51.93 -0.36 -0.07 16 34 H 0.40 4.48 7.64 -40.82 -0.31 4.17 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -34.79 365.46 -9.13 -43.92 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -6.31 Total: 6.11 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -0.44 Total: 5.05 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -0.71 Total: -68.28 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.95 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.23 Total: -0.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.79 -9.13 -43.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167733911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.334 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds