Wall clock time and date at job start Fri Apr 10 2020 18:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30884 * 122.98069 * 2 1 4 4 C 1.30229 * 117.25860 * 179.97438 * 3 2 1 5 5 N 1.37844 * 124.74583 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00028 * 0.02732 * 5 4 3 7 7 C 1.46498 * 120.00238 * 180.02562 * 5 4 3 8 8 S 1.70920 * 110.50989 * 359.97438 * 4 3 2 9 9 C 1.36699 * 122.98733 * 179.97438 * 2 1 3 10 10 C 1.46221 * 126.11172 * 0.02562 * 9 2 1 11 11 O 1.21757 * 119.99864 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00266 * 180.02562 * 10 9 2 13 13 C 1.46507 * 120.00119 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47006 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47193 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47480 * 180.02562 * 15 14 13 17 17 C 1.36934 * 120.00162 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99577 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00397 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00429 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47092 * 90.00062 * 21 19 17 23 23 H 1.48499 * 109.47293 * 210.00027 * 21 19 17 24 24 H 1.48501 * 109.47396 * 330.00578 * 21 19 17 25 25 H 1.09000 * 109.47001 * 90.02751 * 1 2 3 26 26 H 1.09003 * 109.47166 * 210.02487 * 1 2 3 27 27 H 1.09001 * 109.47746 * 330.02618 * 1 2 3 28 28 H 1.08995 * 109.47607 * 59.99548 * 6 5 4 29 29 H 1.09003 * 109.47571 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47036 * 299.99518 * 6 5 4 31 31 H 1.08998 * 109.47378 * 89.99932 * 7 5 4 32 32 H 1.09002 * 109.47409 * 210.00324 * 7 5 4 33 33 H 1.09006 * 109.46774 * 330.00184 * 7 5 4 34 34 H 0.96999 * 120.00604 * 359.97438 * 12 10 9 35 35 H 1.08997 * 109.46600 * 299.99280 * 13 12 10 36 36 H 1.08998 * 109.47376 * 59.98984 * 13 12 10 37 37 H 1.09001 * 109.47718 * 299.99417 * 14 13 12 38 38 H 1.09006 * 109.47344 * 59.99804 * 14 13 12 39 39 H 1.09001 * 109.47298 * 300.00111 * 15 14 13 40 40 H 1.08998 * 109.46954 * 59.99595 * 15 14 13 41 41 H 0.96999 * 119.99865 * 359.97438 * 16 15 14 42 42 H 0.96999 * 120.00505 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2194 1.0979 0.0000 4 6 3.5153 0.9681 0.0005 5 7 4.4099 2.0168 0.0001 6 6 3.9201 3.3974 -0.0004 7 6 5.8505 1.7507 0.0002 8 16 3.9515 -0.6845 0.0018 9 6 2.2512 -1.1466 0.0005 10 6 1.7296 -2.5126 0.0006 11 8 0.5273 -2.7051 0.0007 12 7 2.5795 -3.5586 0.0016 13 6 2.0568 -4.9272 0.0012 14 6 3.2224 -5.9183 0.0019 15 6 2.6766 -7.3476 0.0021 16 7 3.7926 -8.2966 0.0034 17 6 3.5461 -9.6436 0.0032 18 1 2.5287 -10.0063 0.0025 19 6 4.6035 -10.5428 0.0040 20 7 5.8433 -10.1008 0.0054 21 14 4.2672 -12.3802 0.0045 22 1 4.1786 -12.8676 -1.3956 23 1 5.3704 -13.0853 0.7052 24 1 2.9850 -12.6486 0.7039 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 3.3144 3.5685 0.8894 29 1 4.7671 4.0835 -0.0012 30 1 3.3144 3.5677 -0.8905 31 1 6.2078 1.6842 -1.0274 32 1 6.3695 2.5600 0.5137 33 1 6.0461 0.8096 0.5144 34 1 3.5373 -3.4053 0.0020 35 1 1.4463 -5.0832 0.8905 36 1 1.4480 -5.0834 -0.8894 37 1 3.8327 -5.7622 -0.8876 38 1 3.8315 -5.7622 0.8924 39 1 2.0665 -7.5035 0.8918 40 1 2.0673 -7.5039 -0.8881 41 1 4.7063 -7.9708 0.0037 42 1 6.5823 -10.7290 0.0063 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167733911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:52 Heat of formation + Delta-G solvation = -2.055526 kcal Electronic energy + Delta-G solvation = -22451.101020 eV Core-core repulsion = 18978.337393 eV Total energy + Delta-G solvation = -3472.763627 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31326 -40.28015 -37.93420 -37.43004 -35.90919 -33.79031 -32.37047 -31.45562 -29.34239 -29.22442 -27.42483 -26.77696 -24.55089 -23.16540 -22.62344 -22.47467 -20.49922 -19.29256 -19.11667 -18.00172 -17.43978 -17.04436 -16.78827 -16.67527 -16.24289 -15.73989 -15.70402 -15.28454 -15.15847 -14.89436 -14.69068 -14.42750 -13.84187 -13.77901 -13.57697 -13.44143 -13.32858 -13.26201 -12.94833 -12.81555 -12.59093 -12.43022 -12.22521 -12.07732 -12.05083 -11.78675 -11.18203 -11.01637 -10.94151 -10.69983 -10.30215 -10.14513 -9.01452 -8.66592 -7.96063 -5.25240 -0.56190 -0.05294 0.57372 1.48170 1.48215 1.50007 1.58617 1.71843 2.12315 2.18689 2.56889 3.34145 3.37691 3.73818 3.90483 4.06379 4.08130 4.12618 4.28018 4.32682 4.41265 4.47652 4.65090 4.67717 4.71213 4.73135 4.73922 4.76891 4.84639 4.88981 4.91138 5.21246 5.29848 5.31408 5.40455 5.49530 5.61256 5.79418 6.26653 6.41649 6.75343 7.12716 7.33008 8.07612 8.31666 9.27510 Molecular weight = 312.14amu Principal moments of inertia in cm(-1) A = 0.024325 B = 0.002190 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.816029 B =12780.635307 C =13889.797189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.201 3.799 3 N -0.575 5.575 4 C 0.320 3.680 5 N -0.572 5.572 6 C 0.098 3.902 7 C 0.075 3.925 8 S 0.170 5.830 9 C -0.387 4.387 10 C 0.602 3.398 11 O -0.567 6.567 12 N -0.719 5.719 13 C 0.136 3.864 14 C -0.120 4.120 15 C 0.153 3.847 16 N -0.747 5.747 17 C -0.249 4.249 18 H 0.075 0.925 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.976 3.024 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.270 1.270 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.406 0.594 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.376 0.624 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 31.968 0.096 31.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 N -0.301 5.301 4 C -0.048 4.048 5 N -0.288 5.288 6 C -0.046 4.046 7 C -0.066 4.066 8 S 0.421 5.579 9 C -0.513 4.513 10 C 0.390 3.610 11 O -0.449 6.449 12 N -0.370 5.370 13 C 0.012 3.988 14 C -0.158 4.158 15 C 0.026 3.974 16 N -0.390 5.390 17 C -0.380 4.380 18 H 0.093 0.907 19 C -0.269 4.269 20 N -0.619 5.619 21 Si 0.804 3.196 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.195 1.195 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.090 0.910 34 H 0.241 0.759 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.208 0.792 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.314 31.834 0.109 31.835 hybrid contribution -0.199 -0.945 -0.039 0.967 sum -0.513 30.888 0.070 30.893 Atomic orbital electron populations 1.20619 0.85786 1.04182 1.03866 1.20758 0.98430 0.84628 0.90091 1.66110 1.02982 1.31411 1.29647 1.24055 0.91021 0.93963 0.95766 1.46234 1.04835 1.03552 1.74190 1.21885 1.01555 0.79004 1.02119 1.22299 0.75901 1.04329 1.04066 1.83460 1.04166 0.97486 1.72774 1.24890 0.96459 0.97690 1.32245 1.16730 0.85659 0.83123 0.75492 1.90757 1.15591 1.85714 1.52829 1.45805 1.09948 1.05785 1.75470 1.21145 0.96062 0.79244 1.02393 1.21715 0.97628 0.93227 1.03199 1.20667 0.90422 0.88158 0.98139 1.42544 1.04618 1.02285 1.89552 1.19654 0.92910 0.84061 1.41414 0.90662 1.25603 0.95122 1.02588 1.03584 1.69808 0.98150 1.34590 1.59387 0.85107 0.77040 0.79921 0.77488 1.21306 1.21994 1.19501 0.89641 0.89551 0.89641 0.92482 0.86742 0.92556 0.90347 0.86577 0.90958 0.75883 0.91456 0.91469 0.90827 0.90826 0.95832 0.95827 0.79245 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.71 71.24 0.69 -1.25 16 2 C 0.20 5.08 6.83 42.34 0.29 5.37 16 3 N -0.57 -13.35 10.05 -188.53 -1.89 -15.24 16 4 C 0.32 5.99 7.72 179.42 1.39 7.38 16 5 N -0.57 -6.69 3.36 -761.39 -2.56 -9.25 16 6 C 0.10 0.79 10.41 127.77 1.33 2.12 16 7 C 0.08 0.35 10.36 127.77 1.32 1.67 16 8 S 0.17 3.07 20.74 -56.49 -1.17 1.90 16 9 C -0.39 -9.81 6.49 23.98 0.16 -9.65 16 10 C 0.60 17.51 7.76 86.32 0.67 18.18 16 11 O -0.57 -19.61 14.30 -4.53 -0.06 -19.68 16 12 N -0.72 -18.58 5.55 -467.50 -2.60 -21.18 16 13 C 0.14 3.81 5.67 86.38 0.49 4.30 16 14 C -0.12 -3.67 5.44 30.59 0.17 -3.50 16 15 C 0.15 6.12 6.26 86.38 0.54 6.66 16 16 N -0.75 -38.37 5.60 -343.44 -1.92 -40.29 16 17 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 20 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 21 Si 0.98 46.43 29.55 68.60 2.03 48.46 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 2.25 6.04 -2.39 -0.01 2.24 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.11 0.10 7.79 -2.39 -0.02 0.08 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.12 -0.09 7.92 -2.39 -0.02 -0.11 16 33 H 0.07 0.39 7.01 -2.38 -0.02 0.37 16 34 H 0.41 8.77 7.64 -92.71 -0.71 8.06 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.38 20.16 7.67 -92.71 -0.71 19.45 16 42 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -74.62 365.46 0.08 -74.54 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.37 Total: 25.79 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 8.35 Total: 14.01 kcal Atomic # 7 Polarization: -136.33 SS G_CDS: -8.69 Total: -145.02 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.06 Total: -19.68 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.17 Total: 1.90 kcal Total: -74.62 0.08 -74.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167733911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.487 kcal (2) G-P(sol) polarization free energy of solvation -74.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds