Wall clock time and date at job start Fri Apr 10 2020 18:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35782 * 116.99809 * 2 1 4 4 C 1.40348 * 120.90513 * 90.00707 * 3 2 1 5 5 O 1.35557 * 120.48427 * 359.97438 * 4 3 2 6 6 N 1.32398 * 119.02322 * 180.02562 * 4 3 2 7 7 C 1.32496 * 120.98021 * 359.97438 * 6 4 3 8 8 O 1.35545 * 118.99259 * 179.97438 * 7 6 4 9 9 N 1.31855 * 122.01278 * 0.26427 * 7 6 4 10 10 C 1.33526 * 120.86734 * 359.48030 * 9 7 6 11 11 C 1.48069 * 120.53589 * 180.25862 * 10 9 7 12 12 O 1.21531 * 119.99993 * 180.24745 * 11 10 9 13 13 N 1.34777 * 120.00032 * 0.24425 * 11 10 9 14 14 C 1.46503 * 119.99876 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46741 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46952 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47284 * 179.97438 * 16 15 14 18 18 C 1.36943 * 120.00205 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99787 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00071 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00357 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00079 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47144 * 89.99822 * 22 20 18 24 24 H 1.48497 * 109.46990 * 210.00025 * 22 20 18 25 25 H 1.48499 * 109.46867 * 329.99993 * 22 20 18 26 26 H 1.09002 * 109.47251 * 299.99622 * 1 2 3 27 27 H 1.08994 * 109.47515 * 59.99548 * 1 2 3 28 28 H 1.09004 * 109.47515 * 180.02562 * 1 2 3 29 29 H 0.96702 * 113.99816 * 270.01886 * 5 4 3 30 30 H 0.96696 * 114.00039 * 90.00461 * 8 7 6 31 31 H 0.96999 * 120.00061 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47303 * 300.00372 * 14 13 11 33 33 H 1.09000 * 109.47061 * 60.00198 * 14 13 11 34 34 H 1.08994 * 109.47160 * 299.99815 * 15 14 13 35 35 H 1.09000 * 109.47277 * 60.00213 * 15 14 13 36 36 H 1.09000 * 109.47336 * 300.00404 * 16 15 14 37 37 H 1.09007 * 109.47452 * 59.99906 * 16 15 14 38 38 H 0.97000 * 119.99957 * 0.02562 * 17 16 15 39 39 H 0.96997 * 120.00369 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 2.3728 1.8521 1.2042 5 8 2.0778 1.2739 2.3943 6 7 2.9730 3.0314 1.1607 7 6 3.2654 3.6056 0.0030 8 8 3.8798 4.8138 0.0055 9 7 2.9719 3.0402 -1.1515 10 6 2.3710 1.8487 -1.1976 11 6 2.0500 1.2179 -2.4982 12 8 1.4988 0.1351 -2.5288 13 7 2.3689 1.8444 -3.6480 14 6 2.0508 1.2205 -4.9348 15 6 2.5156 2.1321 -6.0722 16 6 2.1839 1.4803 -7.4161 17 7 2.6285 2.3534 -8.5053 18 6 2.4358 1.9759 -9.8075 19 1 1.9558 1.0347 -10.0315 20 6 2.8575 2.8029 -10.8395 21 7 3.4430 3.9497 -10.5665 22 14 2.5941 2.2883 -12.6158 23 1 1.2773 2.7884 -13.0860 24 1 3.6719 2.8607 -13.4620 25 1 2.6238 0.8067 -12.7115 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.2051 1.5072 2.7393 30 1 4.8454 4.7640 0.0064 31 1 2.8091 2.7085 -3.6236 32 1 2.5600 0.2596 -5.0085 33 1 0.9740 1.0677 -5.0081 34 1 2.0067 3.0931 -5.9987 35 1 3.5924 2.2846 -5.9987 36 1 2.6931 0.5193 -7.4894 37 1 1.1072 1.3274 -7.4900 38 1 3.0592 3.1988 -8.3041 39 1 3.7373 4.5278 -11.2876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171045142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:16 Heat of formation + Delta-G solvation = -74.805786 kcal Electronic energy + Delta-G solvation = -25043.917138 eV Core-core repulsion = 20989.412857 eV Total energy + Delta-G solvation = -4054.504281 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -42.16659 -39.82988 -39.26025 -38.07976 -37.20793 -36.10299 -34.50348 -33.93325 -31.96932 -30.82767 -29.65032 -27.52222 -26.38198 -24.92185 -24.14491 -22.71143 -21.46542 -21.15790 -19.85012 -19.47619 -18.90617 -18.26912 -17.51387 -16.89796 -16.77495 -16.08102 -15.92848 -15.72308 -15.44431 -14.72567 -14.67050 -14.48997 -14.06150 -13.55972 -13.31336 -13.26732 -13.03344 -12.78976 -12.51214 -12.37796 -11.78410 -11.69501 -11.29873 -11.13878 -11.00606 -10.93660 -10.84608 -10.64441 -10.55531 -10.07151 -9.75269 -9.71721 -9.54590 -9.18975 -8.88890 -6.94563 -5.77869 -3.07058 -0.27169 -0.04145 2.10194 2.18380 2.70515 2.78324 2.92198 3.11781 3.43557 3.48572 3.50411 3.75161 4.13427 4.26988 4.58065 4.68033 4.75962 4.98155 5.05117 5.13161 5.25276 5.31046 5.56288 5.57731 5.79313 5.87543 6.00996 6.15608 6.28297 6.29815 6.50241 6.74204 6.76428 6.80622 6.89141 7.11347 7.31024 7.69257 7.86059 8.41016 9.52133 10.09088 10.43595 11.45103 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.002275 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.067192 B =12305.376549 C =13339.809726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.295 6.295 3 C 0.030 3.970 4 C 0.371 3.629 5 O -0.458 6.458 6 N -0.521 5.521 7 C 0.515 3.485 8 O -0.449 6.449 9 N -0.490 5.490 10 C 0.146 3.854 11 C 0.565 3.435 12 O -0.505 6.505 13 N -0.700 5.700 14 C 0.121 3.879 15 C -0.139 4.139 16 C 0.157 3.843 17 N -0.734 5.734 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.410 0.590 30 H 0.418 0.582 31 H 0.413 0.587 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.384 0.616 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -2.945 28.362 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.208 6.208 3 C -0.022 4.022 4 C 0.180 3.820 5 O -0.265 6.265 6 N -0.260 5.260 7 C 0.211 3.789 8 O -0.253 6.253 9 N -0.221 5.221 10 C -0.001 4.001 11 C 0.346 3.654 12 O -0.378 6.378 13 N -0.351 5.351 14 C -0.002 4.002 15 C -0.177 4.177 16 C 0.029 3.971 17 N -0.378 5.378 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.124 0.876 29 H 0.270 0.730 30 H 0.278 0.722 31 H 0.249 0.751 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.217 0.783 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.590 -3.166 28.103 28.507 hybrid contribution -0.112 0.142 -0.648 0.673 sum -3.702 -3.024 27.454 27.867 Atomic orbital electron populations 1.23043 0.77310 1.04501 1.00277 1.86123 1.20628 1.20626 1.93464 1.20445 1.00326 0.89972 0.91456 1.19582 0.90976 0.85699 0.85774 1.84807 1.41051 1.67617 1.33017 1.67355 1.15766 1.10612 1.32239 1.19685 0.92108 0.85248 0.81862 1.84776 1.25936 1.19698 1.94845 1.68008 1.14212 1.09393 1.30481 1.22071 0.93939 0.89063 0.95001 1.17438 0.80463 0.84963 0.82495 1.90869 1.41221 1.19390 1.86357 1.45960 1.59818 1.23968 1.05364 1.21505 1.01319 0.97005 0.80388 1.21960 1.02091 0.99247 0.94415 1.20512 0.97045 0.93680 0.85873 1.42339 1.72112 1.22155 1.01218 1.19239 1.32291 1.02733 0.82880 0.91083 1.24759 1.01365 0.96880 0.98063 1.69659 1.45742 1.11632 1.31248 0.86165 0.77270 0.77716 0.84900 1.21688 1.21747 1.20713 0.94083 0.92674 0.87644 0.72953 0.72151 0.75103 0.90741 0.90820 0.91070 0.91063 0.95992 0.96032 0.78254 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.55 101.05 1.07 1.38 16 2 O -0.30 -3.20 8.78 -46.78 -0.41 -3.61 16 3 C 0.03 0.32 5.81 -38.29 -0.22 0.10 16 4 C 0.37 3.47 7.86 -16.51 -0.13 3.34 16 5 O -0.46 -3.24 13.42 -30.77 -0.41 -3.65 16 6 N -0.52 -5.24 10.46 -14.65 -0.15 -5.39 16 7 C 0.52 5.08 8.69 -91.50 -0.80 4.28 16 8 O -0.45 -3.49 13.64 -18.33 -0.25 -3.74 16 9 N -0.49 -5.22 9.72 -11.31 -0.11 -5.33 16 10 C 0.15 1.66 6.79 -82.60 -0.56 1.10 16 11 C 0.56 7.22 7.82 -12.23 -0.10 7.13 16 12 O -0.50 -7.52 14.21 -16.06 -0.23 -7.75 16 13 N -0.70 -8.33 5.55 -61.18 -0.34 -8.67 16 14 C 0.12 1.56 5.67 -4.04 -0.02 1.54 16 15 C -0.14 -2.07 5.44 -26.73 -0.15 -2.22 16 16 C 0.16 3.07 6.26 -4.04 -0.03 3.04 16 17 N -0.73 -18.55 5.60 -59.91 -0.34 -18.88 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 22 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.05 0.47 7.55 -51.93 -0.39 0.07 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.41 0.67 9.06 45.56 0.41 1.08 16 30 H 0.42 1.07 9.06 45.56 0.41 1.48 16 31 H 0.41 4.45 7.85 -40.82 -0.32 4.13 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.38 10.11 7.67 -40.82 -0.31 9.80 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -36.37 348.17 -5.60 -41.97 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.13 Total: 7.70 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -1.18 Total: 12.26 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -0.21 Total: -65.83 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -1.30 Total: -18.75 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.37 -5.60 -41.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171045142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.837 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds