Wall clock time and date at job start Fri Apr 10 2020 18:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35782 * 116.99809 * 2 1 4 4 C 1.40348 * 120.90513 * 90.00707 * 3 2 1 5 5 O 1.35557 * 120.48427 * 359.97438 * 4 3 2 6 6 N 1.32398 * 119.02322 * 180.02562 * 4 3 2 7 7 C 1.32496 * 120.98021 * 359.97438 * 6 4 3 8 8 O 1.35545 * 118.99259 * 179.97438 * 7 6 4 9 9 N 1.31855 * 122.01278 * 0.26427 * 7 6 4 10 10 C 1.33526 * 120.86734 * 359.48030 * 9 7 6 11 11 C 1.48069 * 120.53589 * 180.25862 * 10 9 7 12 12 O 1.21531 * 119.99993 * 180.24745 * 11 10 9 13 13 N 1.34777 * 120.00032 * 0.24425 * 11 10 9 14 14 C 1.46503 * 119.99876 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46741 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46952 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47284 * 179.97438 * 16 15 14 18 18 C 1.36943 * 120.00205 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99787 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00071 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00357 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00079 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47144 * 89.99822 * 22 20 18 24 24 H 1.48497 * 109.46990 * 210.00025 * 22 20 18 25 25 H 1.48499 * 109.46867 * 329.99993 * 22 20 18 26 26 H 1.09002 * 109.47251 * 299.99622 * 1 2 3 27 27 H 1.08994 * 109.47515 * 59.99548 * 1 2 3 28 28 H 1.09004 * 109.47515 * 180.02562 * 1 2 3 29 29 H 0.96702 * 113.99816 * 270.01886 * 5 4 3 30 30 H 0.96696 * 114.00039 * 90.00461 * 8 7 6 31 31 H 0.96999 * 120.00061 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47303 * 300.00372 * 14 13 11 33 33 H 1.09000 * 109.47061 * 60.00198 * 14 13 11 34 34 H 1.08994 * 109.47160 * 299.99815 * 15 14 13 35 35 H 1.09000 * 109.47277 * 60.00213 * 15 14 13 36 36 H 1.09000 * 109.47336 * 300.00404 * 16 15 14 37 37 H 1.09007 * 109.47452 * 59.99906 * 16 15 14 38 38 H 0.97000 * 119.99957 * 0.02562 * 17 16 15 39 39 H 0.96997 * 120.00369 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 2.3728 1.8521 1.2042 5 8 2.0778 1.2739 2.3943 6 7 2.9730 3.0314 1.1607 7 6 3.2654 3.6056 0.0030 8 8 3.8798 4.8138 0.0055 9 7 2.9719 3.0402 -1.1515 10 6 2.3710 1.8487 -1.1976 11 6 2.0500 1.2179 -2.4982 12 8 1.4988 0.1351 -2.5288 13 7 2.3689 1.8444 -3.6480 14 6 2.0508 1.2205 -4.9348 15 6 2.5156 2.1321 -6.0722 16 6 2.1839 1.4803 -7.4161 17 7 2.6285 2.3534 -8.5053 18 6 2.4358 1.9759 -9.8075 19 1 1.9558 1.0347 -10.0315 20 6 2.8575 2.8029 -10.8395 21 7 3.4430 3.9497 -10.5665 22 14 2.5941 2.2883 -12.6158 23 1 1.2773 2.7884 -13.0860 24 1 3.6719 2.8607 -13.4620 25 1 2.6238 0.8067 -12.7115 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.2051 1.5072 2.7393 30 1 4.8454 4.7640 0.0064 31 1 2.8091 2.7085 -3.6236 32 1 2.5600 0.2596 -5.0085 33 1 0.9740 1.0677 -5.0081 34 1 2.0067 3.0931 -5.9987 35 1 3.5924 2.2846 -5.9987 36 1 2.6931 0.5193 -7.4894 37 1 1.1072 1.3274 -7.4900 38 1 3.0592 3.1988 -8.3041 39 1 3.7373 4.5278 -11.2876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171045142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:13 Heat of formation + Delta-G solvation = -110.956249 kcal Electronic energy + Delta-G solvation = -25045.484740 eV Core-core repulsion = 20989.412857 eV Total energy + Delta-G solvation = -4056.071883 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 4.66 seconds Orbital eigenvalues (eV) -42.90906 -40.77019 -39.94652 -38.74450 -37.86536 -37.50275 -35.98137 -34.78272 -33.68039 -31.62265 -31.22882 -28.25851 -27.45685 -26.26575 -24.96642 -24.27596 -22.59072 -22.34029 -20.66280 -20.23429 -19.55812 -19.17438 -18.96546 -18.16325 -17.53301 -17.13164 -16.79732 -16.70266 -16.45363 -16.09705 -15.69220 -15.38624 -15.28431 -15.26434 -14.65939 -14.31557 -13.97384 -13.79843 -13.41381 -13.29860 -12.93418 -12.81713 -12.60669 -12.44823 -12.41849 -12.11266 -12.07004 -12.01387 -11.84251 -11.77459 -11.53663 -10.93594 -10.48782 -10.33160 -10.17877 -9.00920 -7.95745 -5.24958 -1.05746 -0.72776 1.34662 1.39365 1.48539 1.50183 1.58750 1.85173 2.01899 2.21090 2.36742 2.56486 2.94145 3.36961 3.38285 3.65038 3.74202 3.95669 4.08375 4.27439 4.28595 4.41832 4.44227 4.52835 4.70918 4.73175 4.77550 4.86874 5.07791 5.19948 5.32359 5.33724 5.49973 5.97337 6.21425 6.27227 6.33084 6.40059 6.49331 6.89613 7.33360 8.08655 8.31633 9.27894 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.002275 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.067192 B =12305.376549 C =13339.809726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.315 6.315 3 C 0.027 3.973 4 C 0.384 3.616 5 O -0.460 6.460 6 N -0.529 5.529 7 C 0.517 3.483 8 O -0.453 6.453 9 N -0.498 5.498 10 C 0.134 3.866 11 C 0.565 3.435 12 O -0.530 6.530 13 N -0.694 5.694 14 C 0.132 3.868 15 C -0.121 4.121 16 C 0.153 3.847 17 N -0.748 5.748 18 C -0.248 4.248 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.975 3.025 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.269 1.269 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.116 0.884 29 H 0.434 0.566 30 H 0.438 0.562 31 H 0.419 0.581 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.375 0.625 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 -3.345 29.565 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C -0.026 4.026 4 C 0.192 3.808 5 O -0.271 6.271 6 N -0.268 5.268 7 C 0.212 3.788 8 O -0.260 6.260 9 N -0.229 5.229 10 C -0.012 4.012 11 C 0.348 3.652 12 O -0.405 6.405 13 N -0.345 5.345 14 C 0.009 3.991 15 C -0.159 4.159 16 C 0.026 3.974 17 N -0.391 5.391 18 C -0.379 4.379 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.804 3.196 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.194 1.194 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.134 0.866 29 H 0.299 0.701 30 H 0.303 0.697 31 H 0.256 0.744 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.207 0.793 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.028 -3.579 29.344 29.835 hybrid contribution -0.008 0.239 -0.886 0.918 sum -4.036 -3.340 28.458 28.936 Atomic orbital electron populations 1.23243 0.75790 1.05526 1.01112 1.86082 1.22238 1.20936 1.93574 1.20514 1.00477 0.89943 0.91625 1.19536 0.90010 0.85173 0.86084 1.84765 1.42941 1.67471 1.31889 1.67467 1.16185 1.10925 1.32202 1.19790 0.91840 0.85478 0.81665 1.84745 1.27827 1.18716 1.94716 1.67977 1.14701 1.09267 1.31004 1.21838 0.95142 0.89705 0.94522 1.17622 0.79863 0.84650 0.83049 1.90849 1.42372 1.20470 1.86823 1.45837 1.59683 1.24128 1.04880 1.21274 1.01293 0.96348 0.80194 1.21719 1.02253 0.99251 0.92698 1.20677 0.96953 0.93224 0.86526 1.42566 1.72177 1.22580 1.01798 1.19653 1.31250 1.02691 0.84341 0.90564 1.25599 1.01914 0.97166 1.02214 1.69809 1.47281 1.12795 1.32150 0.85119 0.76860 0.77861 0.79802 1.21311 1.22114 1.19415 0.90883 0.94178 0.86608 0.70123 0.69697 0.74365 0.90865 0.90656 0.90828 0.90876 0.95738 0.95662 0.79291 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.55 113.37 1.20 1.69 16 2 O -0.31 -6.52 8.78 -64.61 -0.57 -7.09 16 3 C 0.03 0.54 5.81 23.11 0.13 0.67 16 4 C 0.38 6.55 7.86 85.12 0.67 7.22 16 5 O -0.46 -5.47 13.42 -76.78 -1.03 -6.50 16 6 N -0.53 -9.78 10.46 -425.94 -4.46 -14.23 16 7 C 0.52 9.50 8.69 180.65 1.57 11.07 16 8 O -0.45 -6.34 13.64 -88.50 -1.21 -7.54 16 9 N -0.50 -10.15 9.72 -302.82 -2.94 -13.10 16 10 C 0.13 2.96 6.79 41.82 0.28 3.24 16 11 C 0.57 14.22 7.82 86.85 0.68 14.89 16 12 O -0.53 -15.67 14.21 16.65 0.24 -15.44 16 13 N -0.69 -16.00 5.55 -465.75 -2.58 -18.59 16 14 C 0.13 3.31 5.67 86.38 0.49 3.80 16 15 C -0.12 -3.51 5.44 30.59 0.17 -3.35 16 16 C 0.15 5.88 6.26 86.38 0.54 6.42 16 17 N -0.75 -37.80 5.60 -343.45 -1.92 -39.73 16 18 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 21 N -0.97 -59.27 13.06 21.65 0.28 -58.99 16 22 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.04 0.66 7.55 -2.39 -0.02 0.64 16 28 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.43 0.21 9.06 -74.06 -0.67 -0.46 16 30 H 0.44 1.52 9.06 -74.06 -0.67 0.85 16 31 H 0.42 8.67 7.85 -92.71 -0.73 7.94 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.38 19.95 7.67 -92.71 -0.71 19.24 16 39 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -76.89 348.17 -6.75 -83.65 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -1.63 Total: 20.78 kcal Atomic # 6 Polarization: 21.65 SS G_CDS: 7.04 Total: 28.69 kcal Atomic # 7 Polarization: -133.01 SS G_CDS: -11.62 Total: -144.63 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -2.57 Total: -36.56 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -76.89 -6.75 -83.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171045142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.310 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.66 seconds