Wall clock time and date at job start Fri Apr 10 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46726 * 2 1 4 4 C 1.52992 * 109.47270 * 240.00087 * 2 1 3 5 5 O 1.45203 * 109.47297 * 119.99713 * 2 1 3 6 6 C 1.34635 * 116.99424 * 60.00035 * 5 2 1 7 7 O 1.21503 * 120.00762 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99565 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00058 * 359.97438 * 8 6 5 10 10 C 1.50703 * 109.47289 * 270.00143 * 9 8 6 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00144 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99733 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46762 * 60.00562 * 14 12 10 16 16 H 1.48506 * 109.46725 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47116 * 300.00217 * 14 12 10 18 18 C 1.46493 * 120.00131 * 180.02562 * 8 6 5 19 19 C 1.50706 * 109.47492 * 269.99969 * 18 8 6 20 20 O 1.21284 * 119.99305 * 359.97438 * 19 18 8 21 21 N 1.34772 * 120.00665 * 179.97438 * 19 18 8 22 22 C 1.47125 * 136.18095 * 359.63694 * 21 19 18 23 23 C 1.50981 * 87.80794 * 206.49407 * 22 21 19 24 24 O 1.20764 * 137.57485 * 154.25460 * 23 22 21 25 25 C 1.47117 * 136.19008 * 179.97438 * 21 19 18 26 26 H 1.09000 * 109.47368 * 299.99999 * 1 2 3 27 27 H 1.09004 * 109.47211 * 60.00211 * 1 2 3 28 28 H 1.09001 * 109.47260 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46645 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.46860 * 299.99581 * 3 2 1 31 31 H 1.08996 * 109.46885 * 60.00295 * 3 2 1 32 32 H 1.08997 * 109.47234 * 299.99938 * 4 2 1 33 33 H 1.09004 * 109.47246 * 59.99724 * 4 2 1 34 34 H 1.09004 * 109.47514 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47060 * 30.00593 * 9 8 6 36 36 H 1.09004 * 109.47073 * 150.00082 * 9 8 6 37 37 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 38 38 H 1.09006 * 109.47571 * 29.99644 * 18 8 6 39 39 H 1.09005 * 109.47727 * 150.00102 * 18 8 6 40 40 H 1.08995 * 113.51385 * 321.14624 * 22 21 19 41 41 H 1.09001 * 113.51611 * 91.73659 * 22 21 19 42 42 H 1.09000 * 113.51761 * 268.26394 * 25 21 19 43 43 H 1.09000 * 113.51297 * 38.85032 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3383 7 8 0.9517 -2.5097 0.5037 8 7 2.0672 -2.6653 2.4172 9 6 2.9124 -2.0175 3.4234 10 6 4.3624 -2.2061 3.0583 11 1 4.6276 -2.7533 2.1658 12 6 5.3500 -1.6790 3.8631 13 7 5.0268 -1.0122 4.9497 14 14 7.1473 -1.9134 3.4109 15 1 7.4062 -1.3060 2.0809 16 1 8.0039 -1.2566 4.4309 17 1 7.4603 -3.3641 3.3621 18 6 1.6741 -4.0667 2.5832 19 6 0.3785 -4.1377 3.3498 20 8 -0.1628 -3.1179 3.7213 21 7 -0.1785 -5.3342 3.6226 22 6 0.1474 -6.7432 3.3526 23 6 -1.3300 -7.0415 3.4401 24 8 -2.0996 -7.8674 3.0112 25 6 -1.3851 -5.8099 4.3170 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7488 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 2.6824 -0.9527 3.4600 36 1 2.7225 -2.4640 4.3995 37 1 5.7217 -0.6418 5.5160 38 1 1.5420 -4.5256 1.6033 39 1 2.4507 -4.5995 3.1322 40 1 0.5651 -6.9104 2.3598 41 1 0.7335 -7.2131 4.1424 42 1 -1.2236 -6.0213 5.3741 43 1 -2.2626 -5.1883 4.1395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184853690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:36 Heat of formation + Delta-G solvation = -92.858155 kcal Electronic energy + Delta-G solvation = -27091.272182 eV Core-core repulsion = 23139.525435 eV Total energy + Delta-G solvation = -3951.746747 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.89418 -40.12914 -38.79498 -37.17614 -36.47002 -34.87917 -33.36673 -32.56918 -29.94432 -27.73346 -27.04976 -27.03308 -26.81140 -26.08388 -23.07837 -21.60557 -20.48705 -19.17051 -18.62975 -17.40486 -17.17611 -16.66664 -16.51099 -16.20965 -16.03165 -15.34441 -15.02923 -14.95428 -14.56900 -14.36267 -14.33073 -13.86504 -13.51337 -13.19917 -13.02520 -12.84883 -12.46869 -12.21726 -12.14608 -11.86632 -11.70421 -11.54021 -11.49628 -11.32961 -11.09910 -10.99838 -10.78800 -10.69860 -10.20342 -10.05853 -9.83513 -9.79974 -9.68654 -9.39858 -9.03932 -8.52069 -7.92201 -6.13176 -4.20117 1.33296 2.48519 2.77987 2.99757 3.25611 3.30995 3.33241 3.45175 3.63279 3.96580 4.32865 4.57051 4.65593 4.97283 5.04962 5.10764 5.14862 5.20380 5.21309 5.27735 5.28309 5.48050 5.51796 5.69607 5.76159 5.82218 5.99286 6.01532 6.11105 6.19625 6.30404 6.49640 6.62828 6.73335 6.88699 7.11092 7.31462 7.45893 7.54625 7.79754 8.09550 8.18805 8.22317 8.81480 9.11456 9.46131 10.94415 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.005081 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.641943 B = 5509.187831 C = 7594.602621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.132 3.868 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.338 6.338 6 C 0.664 3.336 7 O -0.600 6.600 8 N -0.567 5.567 9 C 0.248 3.752 10 C -0.536 4.536 11 H 0.060 0.940 12 C 0.066 3.934 13 N -0.890 5.890 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.130 3.870 19 C 0.539 3.461 20 O -0.510 6.510 21 N -0.643 5.643 22 C 0.042 3.958 23 C 0.362 3.638 24 O -0.406 6.406 25 C 0.045 3.955 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 -6.700 -4.642 11.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.095 3.905 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.252 6.252 6 C 0.420 3.580 7 O -0.493 6.493 8 N -0.303 5.303 9 C 0.129 3.871 10 C -0.575 4.575 11 H 0.078 0.922 12 C -0.137 4.137 13 N -0.528 5.528 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.003 3.997 19 C 0.328 3.672 20 O -0.382 6.382 21 N -0.385 5.385 22 C -0.082 4.082 23 C 0.232 3.768 24 O -0.274 6.274 25 C -0.078 4.078 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.406 -6.272 -4.847 11.554 hybrid contribution 1.128 0.028 0.002 1.128 sum -7.278 -6.244 -4.845 10.744 Atomic orbital electron populations 1.22486 0.94671 1.04788 1.01743 1.21934 0.93839 0.91724 0.83040 1.21810 1.02506 0.92887 1.02395 1.22479 1.01663 1.03304 0.96227 1.86490 1.70696 1.23357 1.44615 1.17840 0.77742 0.80637 0.81775 1.90770 1.43118 1.70827 1.44619 1.46666 1.51161 1.09793 1.22672 1.19438 0.88031 0.94104 0.85482 1.21415 0.90611 1.35870 1.09571 0.92194 1.24917 0.99260 0.94774 0.94784 1.69933 1.33657 1.35460 1.13798 0.86565 0.84249 0.78366 0.78274 1.20129 1.21169 1.20188 1.20993 0.92801 0.84529 1.01424 1.21343 0.86588 0.80049 0.79236 1.90745 1.62910 1.32567 1.52004 1.49111 1.26432 1.04914 1.58048 1.23944 0.97985 0.81375 1.04898 1.25531 0.91596 0.82287 0.77360 1.90495 1.55852 1.35936 1.45094 1.23917 0.90731 0.93860 0.99342 0.92397 0.91916 0.89535 0.91325 0.90886 0.91571 0.89519 0.91966 0.92154 0.93539 0.94735 0.92511 0.87396 0.86315 0.87563 0.85814 0.86293 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 8.37 37.16 0.31 -2.59 16 2 C 0.13 2.29 1.13 -90.62 -0.10 2.18 16 3 C -0.14 -2.01 8.85 37.16 0.33 -1.68 16 4 C -0.18 -2.85 8.37 37.15 0.31 -2.54 16 5 O -0.34 -7.43 8.71 -40.31 -0.35 -7.78 16 6 C 0.66 14.79 7.70 54.06 0.42 15.21 16 7 O -0.60 -13.06 11.46 -19.27 -0.22 -13.28 16 8 N -0.57 -12.45 1.94 -182.24 -0.35 -12.80 16 9 C 0.25 6.26 5.17 -5.19 -0.03 6.24 16 10 C -0.54 -14.17 9.39 -34.44 -0.32 -14.49 16 11 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 12 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 14 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 18 C 0.13 2.24 5.72 -5.19 -0.03 2.21 16 19 C 0.54 9.32 8.15 -10.98 -0.09 9.23 16 20 O -0.51 -11.11 17.21 5.55 0.10 -11.01 16 21 N -0.64 -7.99 3.71 -191.76 -0.71 -8.70 16 22 C 0.04 0.33 8.37 -10.38 -0.09 0.24 16 23 C 0.36 3.35 9.54 -28.63 -0.27 3.07 16 24 O -0.41 -4.90 17.99 6.00 0.11 -4.79 16 25 C 0.05 0.43 8.59 -10.23 -0.09 0.34 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.60 5.88 -51.93 -0.31 1.29 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.54 5.88 -51.93 -0.31 1.24 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.05 1.30 7.37 -51.93 -0.38 0.92 16 36 H 0.03 0.90 8.07 -51.93 -0.42 0.49 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.11 1.69 7.42 -51.93 -0.39 1.30 16 39 H 0.12 1.81 8.07 -51.93 -0.42 1.39 16 40 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -34.61 368.36 -6.33 -40.94 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.41 Total: 1.63 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 0.25 Total: 19.10 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.33 Total: -45.92 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.37 Total: -36.87 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.61 -6.33 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184853690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.919 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds