Wall clock time and date at job start Fri Apr 10 2020 18:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46726 * 2 1 4 4 C 1.52992 * 109.47270 * 240.00087 * 2 1 3 5 5 O 1.45203 * 109.47297 * 119.99713 * 2 1 3 6 6 C 1.34635 * 116.99424 * 60.00035 * 5 2 1 7 7 O 1.21503 * 120.00762 * 0.02562 * 6 5 2 8 8 N 1.34778 * 119.99565 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00058 * 359.97438 * 8 6 5 10 10 C 1.50703 * 109.47289 * 270.00143 * 9 8 6 11 11 H 1.07994 * 119.99399 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00144 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99733 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46762 * 60.00562 * 14 12 10 16 16 H 1.48506 * 109.46725 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47116 * 300.00217 * 14 12 10 18 18 C 1.46493 * 120.00131 * 180.02562 * 8 6 5 19 19 C 1.50706 * 109.47492 * 269.99969 * 18 8 6 20 20 O 1.21284 * 119.99305 * 359.97438 * 19 18 8 21 21 N 1.34772 * 120.00665 * 179.97438 * 19 18 8 22 22 C 1.47125 * 136.18095 * 359.63694 * 21 19 18 23 23 C 1.50981 * 87.80794 * 206.49407 * 22 21 19 24 24 O 1.20764 * 137.57485 * 154.25460 * 23 22 21 25 25 C 1.47117 * 136.19008 * 179.97438 * 21 19 18 26 26 H 1.09000 * 109.47368 * 299.99999 * 1 2 3 27 27 H 1.09004 * 109.47211 * 60.00211 * 1 2 3 28 28 H 1.09001 * 109.47260 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46645 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.46860 * 299.99581 * 3 2 1 31 31 H 1.08996 * 109.46885 * 60.00295 * 3 2 1 32 32 H 1.08997 * 109.47234 * 299.99938 * 4 2 1 33 33 H 1.09004 * 109.47246 * 59.99724 * 4 2 1 34 34 H 1.09004 * 109.47514 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47060 * 30.00593 * 9 8 6 36 36 H 1.09004 * 109.47073 * 150.00082 * 9 8 6 37 37 H 0.96997 * 119.99752 * 179.97438 * 13 12 10 38 38 H 1.09006 * 109.47571 * 29.99644 * 18 8 6 39 39 H 1.09005 * 109.47727 * 150.00102 * 18 8 6 40 40 H 1.08995 * 113.51385 * 321.14624 * 22 21 19 41 41 H 1.09001 * 113.51611 * 91.73659 * 22 21 19 42 42 H 1.09000 * 113.51761 * 268.26394 * 25 21 19 43 43 H 1.09000 * 113.51297 * 38.85032 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3383 7 8 0.9517 -2.5097 0.5037 8 7 2.0672 -2.6653 2.4172 9 6 2.9124 -2.0175 3.4234 10 6 4.3624 -2.2061 3.0583 11 1 4.6276 -2.7533 2.1658 12 6 5.3500 -1.6790 3.8631 13 7 5.0268 -1.0122 4.9497 14 14 7.1473 -1.9134 3.4109 15 1 7.4062 -1.3060 2.0809 16 1 8.0039 -1.2566 4.4309 17 1 7.4603 -3.3641 3.3621 18 6 1.6741 -4.0667 2.5832 19 6 0.3785 -4.1377 3.3498 20 8 -0.1628 -3.1179 3.7213 21 7 -0.1785 -5.3342 3.6226 22 6 0.1474 -6.7432 3.3526 23 6 -1.3300 -7.0415 3.4401 24 8 -2.0996 -7.8674 3.0112 25 6 -1.3851 -5.8099 4.3170 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7488 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 2.6824 -0.9527 3.4600 36 1 2.7225 -2.4640 4.3995 37 1 5.7217 -0.6418 5.5160 38 1 1.5420 -4.5256 1.6033 39 1 2.4507 -4.5995 3.1322 40 1 0.5651 -6.9104 2.3598 41 1 0.7335 -7.2131 4.1424 42 1 -1.2236 -6.0213 5.3741 43 1 -2.2626 -5.1883 4.1395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184853690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:33 Heat of formation + Delta-G solvation = -116.256833 kcal Electronic energy + Delta-G solvation = -27092.286824 eV Core-core repulsion = 23139.525435 eV Total energy + Delta-G solvation = -3952.761390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -41.99343 -41.57209 -40.02258 -38.44912 -37.75905 -36.63211 -34.84112 -34.51519 -31.29920 -29.41028 -28.31803 -28.25421 -27.96563 -27.21004 -25.04370 -23.05072 -21.61183 -20.34209 -19.93536 -18.93359 -18.68079 -18.22858 -17.81716 -17.45100 -17.24229 -16.86002 -16.52430 -16.12306 -16.03369 -15.72129 -15.57657 -15.21307 -14.93205 -14.42885 -14.32713 -14.11637 -13.93483 -13.50603 -13.33114 -13.18683 -13.09339 -13.02054 -12.89030 -12.80274 -12.70840 -12.52799 -12.48141 -12.26229 -11.99322 -11.84453 -11.34289 -11.25937 -11.00637 -10.62222 -10.58326 -10.07978 -9.66138 -8.18038 -6.33708 0.52953 1.23756 1.44525 1.45675 1.47509 1.55283 1.68100 2.02390 2.42691 2.66893 3.05786 3.13133 3.18889 3.51472 3.81830 3.86404 4.00785 4.10645 4.24724 4.34844 4.39802 4.47291 4.57813 4.60961 4.64338 4.64582 4.75535 4.76852 4.78198 4.86088 4.89811 5.11426 5.20696 5.32794 5.38426 5.56596 5.59040 5.74598 6.04048 6.05383 6.42690 6.48840 6.76184 6.93467 7.33574 7.47243 8.89367 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.005081 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.641943 B = 5509.187831 C = 7594.602621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.113 3.887 3 C -0.134 4.134 4 C -0.171 4.171 5 O -0.367 6.367 6 C 0.657 3.343 7 O -0.601 6.601 8 N -0.575 5.575 9 C 0.271 3.729 10 C -0.543 4.543 11 H 0.061 0.939 12 C 0.017 3.983 13 N -0.926 5.926 14 Si 0.966 3.034 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.261 1.261 18 C 0.125 3.875 19 C 0.538 3.462 20 O -0.570 6.570 21 N -0.648 5.648 22 C 0.051 3.949 23 C 0.376 3.624 24 O -0.434 6.434 25 C 0.041 3.959 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.008 0.992 36 H 0.018 0.982 37 H 0.267 0.733 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.166 0.834 42 H 0.152 0.848 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.746 -7.925 -5.820 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.077 3.923 3 C -0.191 4.191 4 C -0.228 4.228 5 O -0.281 6.281 6 C 0.413 3.587 7 O -0.494 6.494 8 N -0.311 5.311 9 C 0.150 3.850 10 C -0.581 4.581 11 H 0.080 0.920 12 C -0.183 4.183 13 N -0.565 5.565 14 Si 0.790 3.210 15 H -0.200 1.200 16 H -0.209 1.209 17 H -0.186 1.186 18 C -0.001 4.001 19 C 0.328 3.672 20 O -0.448 6.448 21 N -0.387 5.387 22 C -0.071 4.071 23 C 0.248 3.752 24 O -0.304 6.304 25 C -0.082 4.082 26 H 0.067 0.933 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.142 0.858 41 H 0.183 0.817 42 H 0.169 0.831 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.477 -7.580 -6.041 12.241 hybrid contribution 0.725 0.371 0.360 0.890 sum -6.752 -7.209 -5.682 11.394 Atomic orbital electron populations 1.22404 0.93932 1.03399 1.03113 1.22492 0.94686 0.92940 0.82228 1.21856 1.02015 0.91207 1.03996 1.22401 1.01203 1.02264 0.96957 1.86481 1.71285 1.23388 1.46990 1.17996 0.77841 0.80931 0.81917 1.90753 1.43101 1.71003 1.44571 1.46659 1.51045 1.11480 1.21954 1.18888 0.88375 0.92062 0.85629 1.21610 0.91168 1.35807 1.09531 0.92041 1.25771 1.03758 0.94229 0.94520 1.70064 1.35141 1.36366 1.14900 0.85495 0.78652 0.79034 0.77796 1.19960 1.20883 1.18557 1.21287 0.93672 0.82325 1.02812 1.21117 0.86463 0.80641 0.78998 1.90715 1.64479 1.34980 1.54601 1.48919 1.27160 1.05518 1.57080 1.24256 0.97273 0.78130 1.07440 1.25403 0.92131 0.81421 0.76204 1.90504 1.56707 1.37121 1.46037 1.24233 0.89265 0.93578 1.01126 0.93326 0.88168 0.92194 0.92096 0.86898 0.92307 0.91725 0.88340 0.92737 0.97403 0.96408 0.92371 0.85641 0.84301 0.85753 0.81736 0.83055 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.46 8.37 71.98 0.60 -4.85 16 2 C 0.11 3.87 1.13 -10.79 -0.01 3.86 16 3 C -0.13 -3.71 8.85 71.98 0.64 -3.08 16 4 C -0.17 -5.24 8.37 71.98 0.60 -4.64 16 5 O -0.37 -16.69 8.71 -55.45 -0.48 -17.18 16 6 C 0.66 30.16 7.70 129.79 1.00 31.15 16 7 O -0.60 -26.64 11.46 19.83 0.23 -26.41 16 8 N -0.57 -25.98 1.94 -960.89 -1.87 -27.85 16 9 C 0.27 14.23 5.17 85.63 0.44 14.67 16 10 C -0.54 -29.04 9.39 25.60 0.24 -28.80 16 11 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 12 C 0.02 0.92 5.46 84.65 0.46 1.38 16 13 N -0.93 -53.18 13.29 21.45 0.28 -52.90 16 14 Si 0.97 41.80 29.54 68.60 2.03 43.83 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 18 C 0.12 4.29 5.72 85.64 0.49 4.78 16 19 C 0.54 18.75 8.15 87.66 0.71 19.47 16 20 O -0.57 -25.91 17.21 -3.04 -0.05 -25.96 16 21 N -0.65 -15.21 3.71 -881.76 -3.27 -18.48 16 22 C 0.05 0.64 8.37 81.94 0.69 1.32 16 23 C 0.38 6.20 9.54 29.39 0.28 6.48 16 24 O -0.43 -9.88 17.99 -1.46 -0.03 -9.90 16 25 C 0.04 0.72 8.59 82.04 0.70 1.42 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 2.24 5.88 -2.39 -0.01 2.22 16 29 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 2.27 5.88 -2.39 -0.01 2.26 16 33 H 0.10 2.24 8.14 -2.39 -0.02 2.23 16 34 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.01 0.47 7.37 -2.39 -0.02 0.45 16 36 H 0.02 0.98 8.07 -2.38 -0.02 0.96 16 37 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.13 3.80 7.42 -2.38 -0.02 3.79 16 39 H 0.14 4.09 8.07 -2.38 -0.02 4.07 16 40 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.17 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -78.98 368.36 4.70 -74.28 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 1.01 Total: 17.40 kcal Atomic # 6 Polarization: 36.32 SS G_CDS: 6.85 Total: 43.17 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -4.85 Total: -99.23 kcal Atomic # 8 Polarization: -79.12 SS G_CDS: -0.33 Total: -79.45 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -78.98 4.70 -74.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184853690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.976 kcal (2) G-P(sol) polarization free energy of solvation -78.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds