Wall clock time and date at job start Fri Apr 10 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99763 * 2 1 4 4 H 1.48502 * 109.47126 * 239.99971 * 3 2 1 5 5 H 1.48507 * 109.47156 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47159 * 119.99651 * 3 2 1 7 7 C 1.38805 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00166 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00142 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47063 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.46583 * 304.98995 * 11 10 9 13 13 C 1.54804 * 109.46928 * 184.99617 * 11 10 9 14 14 N 1.45115 * 109.53038 * 172.10493 * 13 11 10 15 15 C 1.34780 * 118.75618 * 269.29268 * 14 13 11 16 16 O 1.21727 * 119.99907 * 355.01985 * 15 14 13 17 17 C 1.46379 * 119.99991 * 175.01673 * 15 14 13 18 18 C 1.33973 * 119.23117 * 87.35938 * 17 15 14 19 19 O 1.35010 * 121.68457 * 180.32774 * 18 17 15 20 20 C 1.43241 * 116.76404 * 342.83945 * 19 18 17 21 21 C 1.53549 * 108.09200 * 45.48966 * 20 19 18 22 22 O 1.36214 * 119.22980 * 267.08750 * 17 15 14 23 23 C 1.47508 * 122.48569 * 89.56887 * 14 13 11 24 24 C 1.53946 * 110.82294 * 317.97548 * 23 14 13 25 25 C 1.51542 * 109.72659 * 320.30915 * 24 23 14 26 26 O 1.38012 * 109.46691 * 64.98297 * 11 10 9 27 27 H 0.97000 * 120.00408 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99291 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47348 * 59.99371 * 10 9 7 30 30 H 1.08999 * 109.46835 * 299.99241 * 10 9 7 31 31 H 1.09001 * 109.45798 * 52.08411 * 13 11 10 32 32 H 1.09005 * 109.45089 * 292.11824 * 13 11 10 33 33 H 1.07998 * 119.15994 * 0.34228 * 18 17 15 34 34 H 1.08998 * 109.73987 * 165.14233 * 20 19 18 35 35 H 1.09001 * 109.73955 * 285.79199 * 20 19 18 36 36 H 1.09003 * 109.75076 * 61.47002 * 21 20 19 37 37 H 1.08995 * 109.75462 * 182.16698 * 21 20 19 38 38 H 1.09006 * 109.16568 * 78.49560 * 23 14 13 39 39 H 1.09005 * 109.16691 * 197.68974 * 23 14 13 40 40 H 1.08998 * 109.46621 * 200.17895 * 24 23 14 41 41 H 1.08999 * 109.29849 * 80.33214 * 24 23 14 42 42 H 1.08998 * 109.58423 * 331.50590 * 25 24 23 43 43 H 1.08999 * 109.58716 * 211.07879 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0021 12 1 0.3798 -4.7124 0.8436 13 6 1.8339 -6.1566 0.1304 14 7 0.8909 -7.2434 0.3184 15 6 0.5430 -7.5902 1.5735 16 8 1.0850 -7.0576 2.5244 17 6 -0.4866 -8.6072 1.7931 18 6 -0.1321 -9.8985 1.8357 19 8 -1.0416 -10.8775 2.0288 20 6 -2.3132 -10.4818 2.5562 21 6 -2.7800 -9.2354 1.7905 22 8 -1.7820 -8.2183 1.9548 23 6 0.3031 -7.9868 -0.8120 24 6 -0.0925 -7.0290 -1.9503 25 6 -0.6914 -5.7639 -1.3694 26 8 0.3474 -4.8126 -1.1774 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6843 -3.7140 0.8921 30 1 2.6855 -3.7148 -0.8879 31 1 2.5068 -6.1074 0.9865 32 1 2.4126 -6.3308 -0.7768 33 1 0.9077 -10.1631 1.7127 34 1 -3.0344 -11.2880 2.4220 35 1 -2.2155 -10.2483 3.6164 36 1 -2.8971 -9.4748 0.7336 37 1 -3.7297 -8.8877 2.1968 38 1 1.0312 -8.7082 -1.1831 39 1 -0.5834 -8.5195 -0.4677 40 1 -0.8250 -7.5143 -2.5954 41 1 0.7933 -6.7768 -2.5332 42 1 -1.1626 -5.9886 -0.4126 43 1 -1.4332 -5.3608 -2.0588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199745962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:30 Heat of formation + Delta-G solvation = -101.864384 kcal Electronic energy + Delta-G solvation = -27176.241150 eV Core-core repulsion = 23224.103863 eV Total energy + Delta-G solvation = -3952.137286 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 7.99 seconds Orbital eigenvalues (eV) -41.49334 -40.27138 -38.44356 -37.26129 -35.66020 -34.57279 -32.88953 -32.39524 -30.87497 -29.59554 -28.47338 -26.69496 -25.87609 -24.88071 -22.99774 -21.82319 -21.02117 -20.77328 -19.44984 -18.60391 -18.19596 -17.15193 -17.07522 -16.51405 -16.38728 -15.75665 -15.53231 -15.06319 -14.82349 -14.67388 -14.53194 -14.26144 -13.98710 -13.77402 -13.51814 -13.09653 -13.02472 -12.66283 -12.58111 -12.29626 -12.02495 -11.67693 -11.39380 -11.35108 -11.08207 -10.90761 -10.77255 -10.72546 -10.26076 -10.10717 -9.93785 -9.63164 -9.39854 -8.78475 -8.62601 -8.46053 -6.80554 -5.65049 -2.93348 1.42666 1.96359 2.69200 2.97197 3.27469 3.51710 3.55069 3.56703 3.93537 3.98255 4.29556 4.44424 4.57161 4.58558 4.66754 4.73432 4.75915 4.95413 4.96448 5.09756 5.22044 5.26401 5.37818 5.46467 5.52233 5.57687 5.64297 5.67714 5.84614 5.97605 6.00870 6.12284 6.37378 6.40640 6.45122 6.69850 6.82164 7.03843 7.07743 7.78116 7.88708 8.03222 8.53142 9.64435 10.22905 10.58758 11.57854 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023960 B = 0.003101 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.337138 B = 9026.181771 C = 9168.247767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.166 3.834 11 C 0.089 3.911 12 H 0.053 0.947 13 C 0.079 3.921 14 N -0.596 5.596 15 C 0.576 3.424 16 O -0.509 6.509 17 C -0.059 4.059 18 C -0.012 4.012 19 O -0.302 6.302 20 C 0.014 3.986 21 C 0.018 3.982 22 O -0.292 6.292 23 C 0.108 3.892 24 C -0.165 4.165 25 C 0.072 3.928 26 O -0.368 6.368 27 H 0.254 0.746 28 H 0.387 0.613 29 H 0.035 0.965 30 H 0.028 0.972 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.178 0.822 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 -26.620 -0.895 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.038 3.962 11 C 0.028 3.972 12 H 0.070 0.930 13 C -0.044 4.044 14 N -0.329 5.329 15 C 0.362 3.638 16 O -0.384 6.384 17 C -0.108 4.108 18 C -0.077 4.077 19 O -0.215 6.215 20 C -0.061 4.061 21 C -0.058 4.058 22 O -0.207 6.207 23 C -0.015 4.015 24 C -0.203 4.203 25 C -0.005 4.005 26 O -0.285 6.285 27 H 0.064 0.936 28 H 0.221 0.779 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.194 0.806 34 H 0.138 0.862 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.140 0.860 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.870 -26.093 -0.523 26.549 hybrid contribution -0.191 0.526 0.196 0.593 sum -5.061 -25.567 -0.326 26.065 Atomic orbital electron populations 1.69670 1.05103 1.25579 1.57796 1.24735 0.95515 0.97621 1.03189 0.86254 0.78470 0.83582 0.77792 1.21322 1.21758 1.21306 1.19189 0.90976 0.84136 1.42570 0.91211 1.42224 1.06022 0.99498 1.89287 1.20609 0.92366 0.84610 0.98597 1.22287 0.93763 0.93806 0.87303 0.92960 1.22543 0.92046 0.86028 1.03818 1.47897 1.45102 1.34596 1.05341 1.17416 0.81860 0.81132 0.83436 1.90901 1.54060 1.52307 1.41103 1.20409 0.85677 0.93580 1.11125 1.22730 0.94901 0.86105 1.03985 1.86105 1.23299 1.32748 1.79332 1.23687 0.84954 0.98994 0.98504 1.23692 0.91816 0.88829 1.01418 1.86510 1.11535 1.35726 1.86890 1.22078 0.98446 0.94045 0.86897 1.22559 1.02959 0.97084 0.97717 1.22121 0.89921 0.88316 1.00108 1.86434 1.48056 1.55603 1.38457 0.93577 0.77929 0.94714 0.95403 0.88422 0.89406 0.80554 0.86162 0.90122 0.90308 0.85990 0.91109 0.90265 0.89713 0.89813 0.93238 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.47 13.06 55.49 0.72 -28.75 16 2 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.82 5.54 -59.91 -0.33 -20.15 16 10 C 0.17 3.61 5.92 -4.04 -0.02 3.59 16 11 C 0.09 1.63 2.68 -25.78 -0.07 1.56 16 12 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 13 C 0.08 1.15 4.90 -3.83 -0.02 1.13 16 14 N -0.60 -7.71 2.18 -173.89 -0.38 -8.09 16 15 C 0.58 8.54 7.12 -12.98 -0.09 8.45 16 16 O -0.51 -9.58 16.51 5.16 0.09 -9.49 16 17 C -0.06 -0.72 4.21 -37.81 -0.16 -0.88 16 18 C -0.01 -0.12 10.57 29.23 0.31 0.19 16 19 O -0.30 -2.69 10.47 -30.85 -0.32 -3.01 16 20 C 0.01 0.09 7.29 37.44 0.27 0.36 16 21 C 0.02 0.13 7.32 37.44 0.27 0.40 16 22 O -0.29 -3.55 10.49 -34.54 -0.36 -3.92 16 23 C 0.11 1.02 6.07 -3.00 -0.02 1.00 16 24 C -0.16 -1.63 5.79 -26.98 -0.16 -1.79 16 25 C 0.07 0.99 6.38 36.42 0.23 1.22 16 26 O -0.37 -6.69 9.38 -26.53 -0.25 -6.94 16 27 H 0.25 7.74 8.31 -40.82 -0.34 7.41 16 28 H 0.39 11.26 7.65 -40.82 -0.31 10.95 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 1.49 7.21 -51.93 -0.37 1.12 16 32 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 33 H 0.18 1.42 8.03 -52.49 -0.42 1.00 16 34 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.69 6.20 -51.93 -0.32 0.37 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 42 H 0.05 0.72 7.41 -51.93 -0.38 0.33 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -36.90 352.41 -6.67 -43.57 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.43 Total: 5.73 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 0.30 Total: 7.55 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.01 Total: -56.98 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.85 Total: -23.37 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.90 -6.67 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199745962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.292 kcal (2) G-P(sol) polarization free energy of solvation -36.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.99 seconds