Wall clock time and date at job start Fri Apr 10 2020 18:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99763 * 2 1 4 4 H 1.48502 * 109.47126 * 239.99971 * 3 2 1 5 5 H 1.48507 * 109.47156 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47159 * 119.99651 * 3 2 1 7 7 C 1.38805 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00166 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00142 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47063 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.46583 * 304.98995 * 11 10 9 13 13 C 1.54804 * 109.46928 * 184.99617 * 11 10 9 14 14 N 1.45115 * 109.53038 * 172.10493 * 13 11 10 15 15 C 1.34780 * 118.75618 * 269.29268 * 14 13 11 16 16 O 1.21727 * 119.99907 * 355.01985 * 15 14 13 17 17 C 1.46379 * 119.99991 * 175.01673 * 15 14 13 18 18 C 1.33973 * 119.23117 * 87.35938 * 17 15 14 19 19 O 1.35010 * 121.68457 * 180.32774 * 18 17 15 20 20 C 1.43241 * 116.76404 * 342.83945 * 19 18 17 21 21 C 1.53549 * 108.09200 * 45.48966 * 20 19 18 22 22 O 1.36214 * 119.22980 * 267.08750 * 17 15 14 23 23 C 1.47508 * 122.48569 * 89.56887 * 14 13 11 24 24 C 1.53946 * 110.82294 * 317.97548 * 23 14 13 25 25 C 1.51542 * 109.72659 * 320.30915 * 24 23 14 26 26 O 1.38012 * 109.46691 * 64.98297 * 11 10 9 27 27 H 0.97000 * 120.00408 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99291 * 359.97438 * 9 7 2 29 29 H 1.08996 * 109.47348 * 59.99371 * 10 9 7 30 30 H 1.08999 * 109.46835 * 299.99241 * 10 9 7 31 31 H 1.09001 * 109.45798 * 52.08411 * 13 11 10 32 32 H 1.09005 * 109.45089 * 292.11824 * 13 11 10 33 33 H 1.07998 * 119.15994 * 0.34228 * 18 17 15 34 34 H 1.08998 * 109.73987 * 165.14233 * 20 19 18 35 35 H 1.09001 * 109.73955 * 285.79199 * 20 19 18 36 36 H 1.09003 * 109.75076 * 61.47002 * 21 20 19 37 37 H 1.08995 * 109.75462 * 182.16698 * 21 20 19 38 38 H 1.09006 * 109.16568 * 78.49560 * 23 14 13 39 39 H 1.09005 * 109.16691 * 197.68974 * 23 14 13 40 40 H 1.08998 * 109.46621 * 200.17895 * 24 23 14 41 41 H 1.08999 * 109.29849 * 80.33214 * 24 23 14 42 42 H 1.08998 * 109.58423 * 331.50590 * 25 24 23 43 43 H 1.08999 * 109.58716 * 211.07879 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0021 12 1 0.3798 -4.7124 0.8436 13 6 1.8339 -6.1566 0.1304 14 7 0.8909 -7.2434 0.3184 15 6 0.5430 -7.5902 1.5735 16 8 1.0850 -7.0576 2.5244 17 6 -0.4866 -8.6072 1.7931 18 6 -0.1321 -9.8985 1.8357 19 8 -1.0416 -10.8775 2.0288 20 6 -2.3132 -10.4818 2.5562 21 6 -2.7800 -9.2354 1.7905 22 8 -1.7820 -8.2183 1.9548 23 6 0.3031 -7.9868 -0.8120 24 6 -0.0925 -7.0290 -1.9503 25 6 -0.6914 -5.7639 -1.3694 26 8 0.3474 -4.8126 -1.1774 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6843 -3.7140 0.8921 30 1 2.6855 -3.7148 -0.8879 31 1 2.5068 -6.1074 0.9865 32 1 2.4126 -6.3308 -0.7768 33 1 0.9077 -10.1631 1.7127 34 1 -3.0344 -11.2880 2.4220 35 1 -2.2155 -10.2483 3.6164 36 1 -2.8971 -9.4748 0.7336 37 1 -3.7297 -8.8877 2.1968 38 1 1.0312 -8.7082 -1.1831 39 1 -0.5834 -8.5195 -0.4677 40 1 -0.8250 -7.5143 -2.5954 41 1 0.7933 -6.7768 -2.5332 42 1 -1.1626 -5.9886 -0.4126 43 1 -1.4332 -5.3608 -2.0588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199745962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:21 Heat of formation + Delta-G solvation = -129.757077 kcal Electronic energy + Delta-G solvation = -27177.450667 eV Core-core repulsion = 23224.103863 eV Total energy + Delta-G solvation = -3953.346804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 3.94 seconds Orbital eigenvalues (eV) -42.32910 -41.29448 -39.69478 -38.00711 -36.96315 -36.29894 -34.37770 -33.15791 -32.69027 -30.59807 -29.65513 -27.87952 -26.93323 -26.11688 -24.65161 -23.12790 -22.35172 -21.73482 -20.23542 -19.34935 -19.25742 -19.13000 -18.01106 -17.76588 -17.53097 -16.90493 -16.59976 -16.32755 -15.88305 -15.70367 -15.68207 -15.23019 -15.16538 -14.85547 -14.77094 -14.76055 -14.41102 -13.95265 -13.69027 -13.39557 -13.23629 -13.11290 -12.72616 -12.66715 -12.39146 -12.18938 -12.08744 -11.94279 -11.83474 -11.71060 -11.52519 -11.10486 -10.96754 -10.62021 -9.79308 -9.24244 -9.02000 -7.93834 -5.24228 0.63126 0.95382 1.46538 1.51633 1.57409 1.76183 2.29684 2.48140 2.57363 2.68555 3.39356 3.42741 3.46256 3.58358 3.78381 3.93970 3.97835 4.00453 4.04547 4.06674 4.23220 4.24234 4.34551 4.41858 4.48044 4.51143 4.62660 4.64605 4.68894 4.79368 4.86591 4.88668 5.06114 5.08852 5.14582 5.39494 5.47208 5.75581 6.04203 6.26232 6.35047 6.69580 6.81023 7.32204 8.06067 8.31278 9.30028 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023960 B = 0.003101 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.337138 B = 9026.181771 C = 9168.247767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.981 3.019 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.080 0.920 9 N -0.742 5.742 10 C 0.163 3.837 11 C 0.104 3.896 12 H 0.014 0.986 13 C 0.091 3.909 14 N -0.591 5.591 15 C 0.573 3.427 16 O -0.565 6.565 17 C -0.087 4.087 18 C 0.017 3.983 19 O -0.305 6.305 20 C 0.011 3.989 21 C 0.012 3.988 22 O -0.326 6.326 23 C 0.104 3.896 24 C -0.153 4.153 25 C 0.064 3.936 26 O -0.394 6.394 27 H 0.251 0.749 28 H 0.372 0.628 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.194 0.806 34 H 0.158 0.842 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.141 0.859 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.035 0.965 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 -29.038 -2.213 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.098 0.902 9 N -0.384 5.384 10 C 0.036 3.964 11 C 0.044 3.956 12 H 0.032 0.968 13 C -0.033 4.033 14 N -0.323 5.323 15 C 0.360 3.640 16 O -0.443 6.443 17 C -0.135 4.135 18 C -0.048 4.048 19 O -0.217 6.217 20 C -0.064 4.064 21 C -0.063 4.063 22 O -0.242 6.242 23 C -0.016 4.016 24 C -0.191 4.191 25 C -0.011 4.011 26 O -0.313 6.313 27 H 0.060 0.940 28 H 0.204 0.796 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.211 0.789 34 H 0.175 0.825 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.159 0.841 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.616 -28.581 -1.876 29.012 hybrid contribution -0.374 1.160 0.593 1.355 sum -4.990 -27.420 -1.284 27.900 Atomic orbital electron populations 1.69855 1.06852 1.26173 1.59378 1.25678 0.96478 1.01428 1.03505 0.85105 0.77109 0.78555 0.78321 1.20005 1.22034 1.20293 1.19668 0.91652 0.85193 1.41567 0.90231 1.42445 1.05575 1.01023 1.89393 1.20761 0.93026 0.83814 0.98781 1.21901 0.92777 0.94750 0.86208 0.96821 1.22273 0.91758 0.84668 1.04604 1.48000 1.44382 1.33788 1.06084 1.17925 0.81838 0.81062 0.83212 1.90858 1.56030 1.54622 1.42814 1.20003 0.85486 0.93406 1.14575 1.22959 0.95706 0.85316 1.00854 1.86115 1.24153 1.32521 1.78923 1.23971 0.84408 1.00004 0.97986 1.24040 0.91310 0.88197 1.02706 1.86437 1.12048 1.38240 1.87467 1.22384 0.99775 0.94018 0.85452 1.22481 1.03604 0.95083 0.97959 1.22384 0.89309 0.89563 0.99887 1.86356 1.49237 1.57902 1.37800 0.94003 0.79640 0.94502 0.94378 0.89461 0.86679 0.78932 0.82476 0.90617 0.88780 0.84114 0.87845 0.89111 0.86165 0.89800 0.94672 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.08 13.06 21.65 0.28 -62.80 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 3 Si 0.98 48.22 29.55 68.60 2.03 50.25 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.25 -14.91 9.99 84.03 0.84 -14.07 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.74 -41.91 5.54 -343.46 -1.90 -43.82 16 10 C 0.16 7.28 5.92 86.38 0.51 7.80 16 11 C 0.10 3.98 2.68 31.21 0.08 4.06 16 12 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 13 C 0.09 2.64 4.90 87.25 0.43 3.07 16 14 N -0.59 -14.88 2.18 -822.26 -1.79 -16.68 16 15 C 0.57 17.22 7.12 86.36 0.61 17.84 16 16 O -0.56 -22.34 16.51 -4.44 -0.07 -22.41 16 17 C -0.09 -2.06 4.21 23.42 0.10 -1.96 16 18 C 0.02 0.30 10.57 66.85 0.71 1.01 16 19 O -0.30 -4.57 10.47 -69.32 -0.73 -5.30 16 20 C 0.01 0.11 7.29 72.17 0.53 0.64 16 21 C 0.01 0.15 7.32 72.17 0.53 0.67 16 22 O -0.33 -7.84 10.49 -82.50 -0.87 -8.70 16 23 C 0.10 1.68 6.07 86.51 0.53 2.20 16 24 C -0.15 -2.61 5.79 30.44 0.18 -2.44 16 25 C 0.06 1.75 6.38 71.50 0.46 2.20 16 26 O -0.39 -14.62 9.38 -117.83 -1.11 -15.72 16 27 H 0.25 15.70 8.31 -92.71 -0.77 14.92 16 28 H 0.37 22.76 7.65 -92.71 -0.71 22.05 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 2.74 7.21 -2.39 -0.02 2.72 16 32 H 0.12 2.71 8.11 -2.38 -0.02 2.69 16 33 H 0.19 2.63 8.03 -2.91 -0.02 2.60 16 34 H 0.16 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.09 1.31 6.20 -2.38 -0.01 1.30 16 40 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16 42 H 0.03 1.04 7.41 -2.39 -0.02 1.03 16 43 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -83.96 352.41 2.12 -81.85 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.31 Total: 26.64 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 5.96 Total: 16.69 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -3.41 Total: -123.29 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -2.77 Total: -52.13 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -83.96 2.12 -81.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199745962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.912 kcal (2) G-P(sol) polarization free energy of solvation -83.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds