Wall clock time and date at job start Fri Apr 10 2020 18:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 120.00300 * 2 1 4 4 H 1.48501 * 109.46962 * 89.99460 * 3 2 1 5 5 H 1.48492 * 109.47302 * 209.99587 * 3 2 1 6 6 H 1.48503 * 109.46743 * 329.99782 * 3 2 1 7 7 C 1.38815 * 119.99966 * 180.26813 * 2 1 3 8 8 H 1.07994 * 119.99781 * 359.72921 * 7 2 1 9 9 N 1.36935 * 120.00039 * 179.72542 * 7 2 1 10 10 C 1.46497 * 119.99861 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46933 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47288 * 60.00729 * 11 10 9 13 13 C 1.54810 * 109.46650 * 180.02562 * 11 10 9 14 14 N 1.45122 * 109.53445 * 187.87876 * 13 11 10 15 15 C 1.34775 * 118.76137 * 90.71963 * 14 13 11 16 16 O 1.21733 * 119.99965 * 354.86506 * 15 14 13 17 17 C 1.46380 * 120.00263 * 174.87488 * 15 14 13 18 18 C 1.33979 * 119.22549 * 274.97190 * 17 15 14 19 19 O 1.34998 * 121.68187 * 180.12263 * 18 17 15 20 20 C 1.43244 * 116.83406 * 343.31981 * 19 18 17 21 21 C 1.53553 * 108.08988 * 45.24969 * 20 19 18 22 22 O 1.36205 * 119.23388 * 95.24358 * 17 15 14 23 23 C 1.47514 * 122.48345 * 270.73295 * 14 13 11 24 24 C 1.53567 * 111.02739 * 41.61533 * 23 14 13 25 25 C 1.51532 * 109.58327 * 39.97505 * 24 23 14 26 26 O 1.38018 * 109.46799 * 300.00731 * 11 10 9 27 27 H 0.97011 * 119.99871 * 0.02562 * 1 2 3 28 28 H 0.97003 * 120.00063 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.47583 * 300.00162 * 10 9 7 30 30 H 1.08998 * 109.47177 * 60.00501 * 10 9 7 31 31 H 1.09004 * 109.45782 * 307.89413 * 13 11 10 32 32 H 1.08999 * 109.46045 * 67.85492 * 13 11 10 33 33 H 1.07992 * 119.15838 * 0.39032 * 18 17 15 34 34 H 1.09003 * 109.73672 * 285.60561 * 20 19 18 35 35 H 1.08995 * 109.78487 * 164.92671 * 20 19 18 36 36 H 1.08996 * 109.75579 * 182.22067 * 21 20 19 37 37 H 1.09002 * 109.74890 * 61.47521 * 21 20 19 38 38 H 1.09003 * 109.16338 * 162.00790 * 23 14 13 39 39 H 1.08993 * 109.16929 * 281.26419 * 23 14 13 40 40 H 1.09004 * 109.45157 * 160.01016 * 24 23 14 41 41 H 1.08998 * 109.45324 * 279.96539 * 24 23 14 42 42 H 1.08999 * 109.58990 * 28.37957 * 25 24 23 43 43 H 1.08997 * 109.59033 * 148.67190 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5478 1.4401 -0.6999 6 1 1.4477 2.6526 -0.7001 7 6 2.0102 -1.2022 -0.0056 8 1 1.4702 -2.1374 -0.0056 9 7 3.3795 -1.2022 -0.0113 10 6 4.1120 -2.4709 -0.0178 11 6 5.6162 -2.1913 -0.0226 12 1 5.8829 -1.6225 0.8680 13 6 6.3902 -3.5320 -0.0302 14 7 7.8068 -3.2756 0.1527 15 6 8.3068 -3.2605 1.4042 16 8 7.5597 -3.3664 2.3595 17 6 9.7482 -3.1167 1.6148 18 6 10.5271 -4.2060 1.5745 19 8 11.8616 -4.1309 1.7644 20 6 12.4598 -2.8349 1.6444 21 6 11.5844 -1.8329 2.4110 22 8 10.2655 -1.8793 1.8528 23 6 8.7202 -3.0306 -0.9794 24 6 8.0671 -2.1166 -2.0265 25 6 7.2839 -1.0231 -1.3285 26 8 5.9453 -1.4641 -1.1486 27 1 -0.4850 0.8402 -0.0004 28 1 3.8646 -0.3621 -0.0110 29 1 3.8524 -3.0449 0.8716 30 1 3.8450 -3.0400 -0.9083 31 1 6.0281 -4.1648 0.7802 32 1 6.2325 -4.0370 -0.9832 33 1 10.0766 -5.1682 1.3810 34 1 12.5122 -2.5494 0.5937 35 1 13.4623 -2.8503 2.0719 36 1 11.9945 -0.8286 2.3045 37 1 11.5481 -2.1068 3.4654 38 1 9.6299 -2.5577 -0.6093 39 1 8.9757 -3.9821 -1.4455 40 1 8.8406 -1.6678 -2.6497 41 1 7.3931 -2.7034 -2.6506 42 1 7.7337 -0.8141 -0.3579 43 1 7.2946 -0.1198 -1.9383 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199745963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:39 Heat of formation + Delta-G solvation = -98.627004 kcal Electronic energy + Delta-G solvation = -27219.515508 eV Core-core repulsion = 23267.518605 eV Total energy + Delta-G solvation = -3951.996903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55893 -40.38420 -38.55910 -37.33327 -35.79076 -34.74375 -32.95666 -32.47908 -31.12559 -29.74439 -28.73092 -26.89489 -25.95521 -25.00894 -22.81917 -21.79463 -21.02063 -20.93159 -19.56199 -18.70857 -18.24039 -17.63076 -16.88819 -16.79444 -16.53335 -15.93706 -15.65546 -15.24005 -14.78367 -14.65250 -14.56141 -14.32373 -14.09509 -13.79920 -13.65553 -13.42951 -12.91555 -12.69240 -12.57970 -12.43763 -12.14763 -11.89447 -11.53693 -11.40812 -11.20257 -11.07963 -10.87688 -10.79022 -10.39962 -10.17323 -9.99753 -9.51980 -9.50136 -8.81494 -8.72663 -8.50990 -7.12225 -5.67555 -3.01661 1.38814 1.89194 2.60477 2.84872 3.23456 3.47460 3.52815 3.53834 3.84841 3.85805 4.23547 4.37579 4.50301 4.53411 4.64799 4.69262 4.70019 4.86814 4.88910 5.03737 5.07565 5.17441 5.27768 5.37571 5.43909 5.48916 5.55722 5.62601 5.72254 5.81296 5.89512 5.99346 6.02836 6.32105 6.37154 6.59950 6.71125 6.96070 7.00804 7.80675 7.88148 8.08785 8.51615 9.31685 10.04309 10.25340 11.50957 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.003318 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.838102 B = 8435.707670 C = 8494.415510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.003 3.997 3 Si 0.882 3.118 4 H -0.285 1.285 5 H -0.273 1.273 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.171 3.829 11 C 0.084 3.916 12 H 0.053 0.947 13 C 0.081 3.919 14 N -0.595 5.595 15 C 0.576 3.424 16 O -0.509 6.509 17 C -0.062 4.062 18 C -0.010 4.010 19 O -0.301 6.301 20 C 0.015 3.985 21 C 0.019 3.981 22 O -0.295 6.295 23 C 0.108 3.892 24 C -0.164 4.164 25 C 0.071 3.929 26 O -0.370 6.370 27 H 0.258 0.742 28 H 0.365 0.635 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.178 0.822 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.652 -7.476 -1.380 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.192 4.192 3 Si 0.713 3.287 4 H -0.212 1.212 5 H -0.199 1.199 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.043 3.957 11 C 0.024 3.976 12 H 0.071 0.929 13 C -0.042 4.042 14 N -0.329 5.329 15 C 0.361 3.639 16 O -0.383 6.383 17 C -0.111 4.111 18 C -0.075 4.075 19 O -0.214 6.214 20 C -0.060 4.060 21 C -0.057 4.057 22 O -0.209 6.209 23 C -0.014 4.014 24 C -0.203 4.203 25 C -0.006 4.006 26 O -0.288 6.288 27 H 0.068 0.932 28 H 0.198 0.802 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.195 0.805 34 H 0.098 0.902 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 29.925 -7.557 -1.003 30.881 hybrid contribution 1.066 1.264 0.203 1.666 sum 30.991 -6.293 -0.800 31.633 Atomic orbital electron populations 1.69707 1.05086 1.25727 1.57971 1.24637 0.95216 0.97188 1.02150 0.86548 0.79505 0.84916 0.77761 1.21201 1.19937 1.21805 1.19064 0.80564 0.94769 1.42583 0.89178 1.42555 1.03891 1.02123 1.90952 1.20596 0.85516 0.90181 0.99387 1.22345 0.96396 0.90530 0.88372 0.92890 1.22501 0.78463 0.99360 1.03895 1.47905 1.09428 1.69806 1.05782 1.17405 0.85674 0.77325 0.83448 1.90921 1.58856 1.47897 1.40643 1.20410 0.93145 0.86508 1.11006 1.22702 0.82286 0.98667 1.03866 1.86099 1.18717 1.30599 1.86014 1.23684 0.97849 0.82697 1.01796 1.23684 0.81879 1.02179 0.97976 1.86418 1.31571 1.23855 1.79039 1.21994 0.92392 0.99895 0.87136 1.22479 1.00970 0.98542 0.98278 1.22130 0.82897 0.95983 0.99596 1.86409 1.27219 1.71747 1.43467 0.93160 0.80238 0.93828 0.94686 0.88470 0.89183 0.80506 0.90198 0.86169 0.85997 0.90279 0.89932 0.91212 0.89591 0.89693 0.93247 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.45 13.97 55.49 0.78 -29.67 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 23.30 27.74 -169.99 -4.72 18.58 16 4 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 5 H -0.27 -6.92 6.51 56.52 0.37 -6.55 16 6 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 7 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.75 -19.23 5.29 -59.91 -0.32 -19.55 16 10 C 0.17 3.53 5.95 -4.04 -0.02 3.51 16 11 C 0.08 1.45 2.73 -25.78 -0.07 1.38 16 12 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 13 C 0.08 1.10 4.82 -3.83 -0.02 1.08 16 14 N -0.60 -7.20 2.19 -174.11 -0.38 -7.58 16 15 C 0.58 8.04 7.11 -12.99 -0.09 7.95 16 16 O -0.51 -9.16 16.59 5.16 0.09 -9.08 16 17 C -0.06 -0.71 4.20 -37.81 -0.16 -0.87 16 18 C -0.01 -0.09 10.72 29.23 0.31 0.22 16 19 O -0.30 -2.53 10.47 -30.82 -0.32 -2.86 16 20 C 0.02 0.08 7.30 37.44 0.27 0.35 16 21 C 0.02 0.12 7.31 37.44 0.27 0.40 16 22 O -0.29 -3.28 10.47 -34.51 -0.36 -3.64 16 23 C 0.11 0.95 5.98 -3.19 -0.02 0.93 16 24 C -0.16 -1.52 5.78 -27.18 -0.16 -1.67 16 25 C 0.07 0.91 6.37 36.42 0.23 1.14 16 26 O -0.37 -6.36 9.18 -26.55 -0.24 -6.60 16 27 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 28 H 0.36 9.36 5.39 -40.82 -0.22 9.14 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.37 7.35 -51.93 -0.38 0.99 16 32 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 33 H 0.18 1.34 8.03 -52.49 -0.42 0.92 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.68 6.42 -51.93 -0.33 0.35 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 42 H 0.05 0.67 7.40 -51.93 -0.38 0.28 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -37.61 349.37 -6.32 -43.92 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.40 Total: 4.06 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 0.30 Total: 7.14 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.08 Total: -56.80 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.84 Total: -22.17 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.72 Total: 18.58 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.61 -6.32 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199745963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.707 kcal (2) G-P(sol) polarization free energy of solvation -37.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds