Wall clock time and date at job start Fri Apr 10 2020 18:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99798 * 2 1 4 4 H 1.48506 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47486 * 300.00220 * 3 2 1 6 6 H 1.48497 * 109.46997 * 60.00234 * 3 2 1 7 7 C 1.37880 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99959 * 169.44313 * 7 2 1 9 9 C 1.50699 * 119.99962 * 349.44939 * 7 2 1 10 10 C 1.53004 * 115.54771 * 325.10645 * 9 7 2 11 11 N 1.46501 * 109.46895 * 306.41628 * 10 9 7 12 12 C 1.34779 * 119.99940 * 183.69211 * 11 10 9 13 13 O 1.21352 * 119.99756 * 5.78166 * 12 11 10 14 14 C 1.49450 * 120.00107 * 185.78133 * 12 11 10 15 15 O 1.21338 * 120.00097 * 355.01309 * 14 12 11 16 16 N 1.34776 * 119.99550 * 175.01081 * 14 12 11 17 17 O 1.41599 * 119.99914 * 179.72450 * 16 14 12 18 18 C 1.42899 * 114.00412 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47096 * 180.02562 * 18 17 16 20 20 H 1.08999 * 110.45587 * 52.39738 * 19 18 17 21 21 C 1.54511 * 110.51090 * 174.99717 * 19 18 17 22 22 C 1.54480 * 104.06147 * 118.64301 * 21 19 18 23 23 O 1.44427 * 104.80047 * 23.98270 * 22 21 19 24 24 C 1.44425 * 105.27661 * 319.48415 * 23 22 21 25 25 C 1.52993 * 117.50203 * 110.77942 * 9 7 2 26 26 C 1.52994 * 117.49745 * 179.44122 * 9 7 2 27 27 H 0.96999 * 119.99990 * 5.02165 * 1 2 3 28 28 H 1.09000 * 109.46664 * 186.42353 * 10 9 7 29 29 H 1.08998 * 109.47051 * 66.42075 * 10 9 7 30 30 H 0.96999 * 120.00272 * 3.70024 * 11 10 9 31 31 H 0.97001 * 120.00451 * 359.97438 * 16 14 12 32 32 H 1.09003 * 109.46986 * 299.99568 * 18 17 16 33 33 H 1.08995 * 109.47149 * 60.00302 * 18 17 16 34 34 H 1.08998 * 110.51558 * 237.29579 * 21 19 18 35 35 H 1.09010 * 110.50911 * 359.86610 * 21 19 18 36 36 H 1.09000 * 110.36886 * 142.80946 * 22 21 19 37 37 H 1.08993 * 110.37216 * 265.04057 * 22 21 19 38 38 H 1.08995 * 110.36994 * 281.68411 * 24 23 22 39 39 H 1.09002 * 110.37157 * 159.34580 * 24 23 22 40 40 H 1.09001 * 117.50209 * 215.00045 * 25 9 7 41 41 H 1.09007 * 117.50041 * 0.02562 * 25 9 7 42 42 H 1.08999 * 117.50361 * 359.97008 * 26 9 7 43 43 H 1.08996 * 117.50273 * 144.99425 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0709 -1.2018 -0.1719 9 6 1.2702 -2.4882 0.2379 10 6 0.1016 -2.4121 1.2225 11 7 0.5628 -1.8253 2.4832 12 6 -0.2812 -1.7274 3.5295 13 8 -1.3888 -2.2188 3.4636 14 6 0.1470 -1.0137 4.7707 15 8 1.2837 -0.6014 4.8720 16 7 -0.7295 -0.8280 5.7776 17 8 -0.3222 -0.1569 6.9560 18 6 -1.3519 -0.0313 7.9389 19 6 -0.8025 0.7060 9.1618 20 1 -0.3345 1.6439 8.8627 21 6 -1.9278 0.9657 10.1881 22 6 -1.4693 0.2009 11.4495 23 8 -0.0342 0.1022 11.3199 24 6 0.2029 -0.1850 9.9245 25 6 1.1382 -3.4533 -0.9419 26 6 2.0892 -3.7802 0.2120 27 1 -0.4850 0.8368 -0.0735 28 1 -0.2831 -3.4150 1.4079 29 1 -0.6891 -1.7917 0.8007 30 1 1.4754 -1.5072 2.5649 31 1 -1.6383 -1.1572 5.6964 32 1 -2.1866 0.5312 7.5207 33 1 -1.6939 -1.0228 8.2354 34 1 -2.0147 2.0317 10.3982 35 1 -2.8761 0.5709 9.8232 36 1 -1.7316 0.7593 12.3481 37 1 -1.9187 -0.7917 11.4757 38 1 0.0115 -1.2375 9.7159 39 1 1.2252 0.0770 9.6516 40 1 0.2188 -4.0340 -1.0167 41 1 1.5829 -3.1524 -1.8906 42 1 3.1591 -3.6943 0.0221 43 1 1.7956 -4.5761 0.8965 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261226895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:55 Heat of formation + Delta-G solvation = -81.958135 kcal Electronic energy + Delta-G solvation = -25793.006149 eV Core-core repulsion = 21841.732062 eV Total energy + Delta-G solvation = -3951.274087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.12205 -39.82817 -38.23799 -37.17851 -36.75227 -33.82253 -33.21373 -32.23889 -31.67447 -29.67200 -26.88622 -25.91581 -25.53199 -23.38756 -23.08283 -21.28835 -21.03795 -19.84055 -19.43825 -18.66307 -17.65262 -16.85866 -16.42490 -16.21208 -16.05614 -15.88884 -15.49006 -15.01850 -14.80151 -14.65926 -14.12903 -13.98894 -13.46622 -13.42547 -13.17133 -12.82187 -12.68841 -12.28675 -11.92027 -11.84031 -11.69852 -11.59743 -11.26781 -11.15952 -11.04842 -10.94173 -10.82632 -10.53461 -10.31996 -10.17597 -9.70503 -9.24036 -9.12121 -9.01734 -8.91261 -8.40668 -8.09445 -6.14641 -4.23388 1.54961 1.87779 3.22345 3.33581 3.36087 3.53005 3.65069 3.78090 4.02161 4.22235 4.28615 4.39872 4.50073 4.65583 4.79015 4.82068 4.86336 5.01631 5.10420 5.11851 5.24859 5.34523 5.43551 5.46706 5.54995 5.68275 5.91707 6.21176 6.38384 6.43894 6.50382 6.60423 6.62116 6.77770 6.95092 6.97900 7.18029 7.28141 7.43063 7.82631 7.98173 8.22628 8.26820 8.64176 8.75893 9.38586 10.83082 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.002794 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.989788 B =10018.034999 C =10676.995711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.892 3.108 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.498 4.498 8 H 0.065 0.935 9 C 0.033 3.967 10 C 0.158 3.842 11 N -0.643 5.643 12 C 0.511 3.489 13 O -0.545 6.545 14 C 0.519 3.481 15 O -0.500 6.500 16 N -0.577 5.577 17 O -0.142 6.142 18 C 0.038 3.962 19 C -0.115 4.115 20 H 0.099 0.901 21 C -0.147 4.147 22 C 0.043 3.957 23 O -0.375 6.375 24 C 0.050 3.950 25 C -0.192 4.192 26 C -0.211 4.211 27 H 0.264 0.736 28 H 0.037 0.963 29 H 0.117 0.883 30 H 0.415 0.585 31 H 0.419 0.581 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 -0.158 17.357 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.535 4.535 8 H 0.083 0.917 9 C 0.033 3.967 10 C 0.036 3.964 11 N -0.292 5.292 12 C 0.288 3.712 13 O -0.425 6.425 14 C 0.301 3.699 15 O -0.372 6.372 16 N -0.282 5.282 17 O -0.145 6.145 18 C -0.039 4.039 19 C -0.136 4.136 20 H 0.117 0.883 21 C -0.185 4.185 22 C -0.034 4.034 23 O -0.294 6.294 24 C -0.026 4.026 25 C -0.231 4.231 26 C -0.248 4.248 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.135 0.865 30 H 0.252 0.748 31 H 0.261 0.739 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.897 0.051 17.594 18.556 hybrid contribution -0.015 0.926 -0.131 0.935 sum -5.912 0.977 17.463 18.463 Atomic orbital electron populations 1.69819 1.05958 1.27030 1.48062 1.24978 0.94835 0.99262 0.93897 0.86523 0.80421 0.83351 0.77813 1.19454 1.20956 1.20578 1.20559 0.94242 0.88733 1.49977 0.91676 1.19169 0.94108 0.89388 0.94073 1.21287 0.98821 0.95824 0.80467 1.45691 1.15167 1.57209 1.11121 1.19245 0.85894 0.82249 0.83766 1.90702 1.20845 1.48757 1.82229 1.20768 0.85297 0.80732 0.83113 1.90772 1.18824 1.47986 1.79573 1.47202 1.15182 1.57545 1.08251 1.90578 1.30551 1.75133 1.18247 1.23115 0.91855 1.00562 0.88411 1.22493 0.97162 1.00631 0.93267 0.88265 1.22947 0.98351 1.02366 0.94800 1.23426 0.81943 0.99655 0.98334 1.89158 1.21872 1.92365 1.25963 1.23538 1.00332 0.98365 0.80389 1.22929 0.99491 1.06285 0.94370 1.22986 0.97077 1.01769 1.02959 0.92592 0.94443 0.86536 0.74785 0.73937 0.91281 0.91528 0.89770 0.89931 0.88873 0.92084 0.91707 0.88216 0.91380 0.90023 0.90387 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.79 10.75 55.43 0.60 -22.20 16 2 C 0.07 1.90 5.13 -17.82 -0.09 1.81 16 3 Si 0.89 20.41 29.55 -169.99 -5.02 15.39 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.50 -12.55 8.27 -34.44 -0.28 -12.83 16 8 H 0.07 1.66 7.84 -52.48 -0.41 1.25 16 9 C 0.03 0.77 2.00 -155.67 -0.31 0.46 16 10 C 0.16 3.56 4.75 -4.04 -0.02 3.54 16 11 N -0.64 -13.79 5.27 -60.73 -0.32 -14.11 16 12 C 0.51 10.26 7.88 -11.58 -0.09 10.17 16 13 O -0.55 -11.35 16.48 5.50 0.09 -11.26 16 14 C 0.52 9.71 8.03 -11.59 -0.09 9.61 16 15 O -0.50 -10.70 16.89 -12.67 -0.21 -10.92 16 16 N -0.58 -8.62 6.38 30.90 0.20 -8.42 16 17 O -0.14 -1.97 11.02 -29.65 -0.33 -2.29 16 18 C 0.04 0.34 5.37 37.16 0.20 0.54 16 19 C -0.12 -0.96 3.39 -89.05 -0.30 -1.26 16 20 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.15 -0.89 6.74 -25.16 -0.17 -1.06 16 22 C 0.04 0.29 7.63 37.93 0.29 0.58 16 23 O -0.37 -3.84 11.65 -35.23 -0.41 -4.25 16 24 C 0.05 0.47 7.10 37.93 0.27 0.74 16 25 C -0.19 -4.06 9.96 -26.70 -0.27 -4.33 16 26 C -0.21 -4.27 9.92 -26.70 -0.26 -4.53 16 27 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 28 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 29 H 0.12 2.94 6.04 -51.93 -0.31 2.62 16 30 H 0.42 9.09 7.41 -40.82 -0.30 8.79 16 31 H 0.42 5.19 8.02 -40.82 -0.33 4.86 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.50 7.96 -51.93 -0.41 0.09 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.38 7.73 -51.92 -0.40 -0.02 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.59 7.74 -51.93 -0.40 0.18 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 42 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -29.75 366.03 -7.38 -37.13 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.35 Total: 11.96 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.13 Total: 3.44 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.47 Total: -44.72 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.86 Total: -28.72 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.75 -7.38 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261226895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.824 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds