Wall clock time and date at job start Fri Apr 10 2020 18:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99798 * 2 1 4 4 H 1.48506 * 109.47283 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47486 * 300.00220 * 3 2 1 6 6 H 1.48497 * 109.46997 * 60.00234 * 3 2 1 7 7 C 1.37880 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99959 * 169.44313 * 7 2 1 9 9 C 1.50699 * 119.99962 * 349.44939 * 7 2 1 10 10 C 1.53004 * 115.54771 * 325.10645 * 9 7 2 11 11 N 1.46501 * 109.46895 * 306.41628 * 10 9 7 12 12 C 1.34779 * 119.99940 * 183.69211 * 11 10 9 13 13 O 1.21352 * 119.99756 * 5.78166 * 12 11 10 14 14 C 1.49450 * 120.00107 * 185.78133 * 12 11 10 15 15 O 1.21338 * 120.00097 * 355.01309 * 14 12 11 16 16 N 1.34776 * 119.99550 * 175.01081 * 14 12 11 17 17 O 1.41599 * 119.99914 * 179.72450 * 16 14 12 18 18 C 1.42899 * 114.00412 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.47096 * 180.02562 * 18 17 16 20 20 H 1.08999 * 110.45587 * 52.39738 * 19 18 17 21 21 C 1.54511 * 110.51090 * 174.99717 * 19 18 17 22 22 C 1.54480 * 104.06147 * 118.64301 * 21 19 18 23 23 O 1.44427 * 104.80047 * 23.98270 * 22 21 19 24 24 C 1.44425 * 105.27661 * 319.48415 * 23 22 21 25 25 C 1.52993 * 117.50203 * 110.77942 * 9 7 2 26 26 C 1.52994 * 117.49745 * 179.44122 * 9 7 2 27 27 H 0.96999 * 119.99990 * 5.02165 * 1 2 3 28 28 H 1.09000 * 109.46664 * 186.42353 * 10 9 7 29 29 H 1.08998 * 109.47051 * 66.42075 * 10 9 7 30 30 H 0.96999 * 120.00272 * 3.70024 * 11 10 9 31 31 H 0.97001 * 120.00451 * 359.97438 * 16 14 12 32 32 H 1.09003 * 109.46986 * 299.99568 * 18 17 16 33 33 H 1.08995 * 109.47149 * 60.00302 * 18 17 16 34 34 H 1.08998 * 110.51558 * 237.29579 * 21 19 18 35 35 H 1.09010 * 110.50911 * 359.86610 * 21 19 18 36 36 H 1.09000 * 110.36886 * 142.80946 * 22 21 19 37 37 H 1.08993 * 110.37216 * 265.04057 * 22 21 19 38 38 H 1.08995 * 110.36994 * 281.68411 * 24 23 22 39 39 H 1.09002 * 110.37157 * 159.34580 * 24 23 22 40 40 H 1.09001 * 117.50209 * 215.00045 * 25 9 7 41 41 H 1.09007 * 117.50041 * 0.02562 * 25 9 7 42 42 H 1.08999 * 117.50361 * 359.97008 * 26 9 7 43 43 H 1.08996 * 117.50273 * 144.99425 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0709 -1.2018 -0.1719 9 6 1.2702 -2.4882 0.2379 10 6 0.1016 -2.4121 1.2225 11 7 0.5628 -1.8253 2.4832 12 6 -0.2812 -1.7274 3.5295 13 8 -1.3888 -2.2188 3.4636 14 6 0.1470 -1.0137 4.7707 15 8 1.2837 -0.6014 4.8720 16 7 -0.7295 -0.8280 5.7776 17 8 -0.3222 -0.1569 6.9560 18 6 -1.3519 -0.0313 7.9389 19 6 -0.8025 0.7060 9.1618 20 1 -0.3345 1.6439 8.8627 21 6 -1.9278 0.9657 10.1881 22 6 -1.4693 0.2009 11.4495 23 8 -0.0342 0.1022 11.3199 24 6 0.2029 -0.1850 9.9245 25 6 1.1382 -3.4533 -0.9419 26 6 2.0892 -3.7802 0.2120 27 1 -0.4850 0.8368 -0.0735 28 1 -0.2831 -3.4150 1.4079 29 1 -0.6891 -1.7917 0.8007 30 1 1.4754 -1.5072 2.5649 31 1 -1.6383 -1.1572 5.6964 32 1 -2.1866 0.5312 7.5207 33 1 -1.6939 -1.0228 8.2354 34 1 -2.0147 2.0317 10.3982 35 1 -2.8761 0.5709 9.8232 36 1 -1.7316 0.7593 12.3481 37 1 -1.9187 -0.7917 11.4757 38 1 0.0115 -1.2375 9.7159 39 1 1.2252 0.0770 9.6516 40 1 0.2188 -4.0340 -1.0167 41 1 1.5829 -3.1524 -1.8906 42 1 3.1591 -3.6943 0.0221 43 1 1.7956 -4.5761 0.8965 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261226895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:10:53 Heat of formation + Delta-G solvation = -102.116910 kcal Electronic energy + Delta-G solvation = -25793.880299 eV Core-core repulsion = 21841.732062 eV Total energy + Delta-G solvation = -3952.148237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56748 -40.60071 -39.67878 -38.47572 -38.35630 -35.16179 -34.41841 -34.13800 -32.78189 -30.31444 -28.52403 -27.49414 -26.68808 -24.83013 -23.74380 -22.92840 -21.88559 -21.27071 -21.07239 -20.00371 -19.04666 -18.00931 -17.77778 -17.42205 -17.16972 -16.88314 -16.74562 -16.50120 -16.25881 -15.89485 -15.58561 -15.23942 -14.86846 -14.75341 -14.38835 -14.12679 -13.64494 -13.60932 -13.43592 -12.99200 -12.92373 -12.77625 -12.67323 -12.61572 -12.29952 -12.27654 -12.03294 -11.90710 -11.60738 -11.43896 -11.09216 -10.83191 -10.77652 -10.64038 -10.23800 -10.17489 -9.85072 -8.06705 -6.19387 0.29897 0.37714 1.38586 1.46857 1.53131 2.10996 2.30115 2.40519 2.94492 3.00818 3.24048 3.42149 3.52485 3.68342 3.75409 3.79817 4.11564 4.13905 4.23049 4.30012 4.31929 4.48454 4.51746 4.71564 4.73657 4.77404 4.80544 4.85203 4.98429 5.00128 5.07071 5.07506 5.28601 5.41291 5.43002 5.54534 5.60783 5.76939 5.78531 5.90264 6.35805 6.46456 6.78893 6.84174 7.01212 7.43322 8.88667 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.002794 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.989788 B =10018.034999 C =10676.995711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.288 1.288 7 C -0.506 4.506 8 H 0.056 0.944 9 C 0.003 3.997 10 C 0.169 3.831 11 N -0.649 5.649 12 C 0.513 3.487 13 O -0.553 6.553 14 C 0.523 3.477 15 O -0.534 6.534 16 N -0.558 5.558 17 O -0.159 6.159 18 C 0.031 3.969 19 C -0.112 4.112 20 H 0.089 0.911 21 C -0.138 4.138 22 C 0.036 3.964 23 O -0.401 6.401 24 C 0.047 3.953 25 C -0.189 4.189 26 C -0.188 4.188 27 H 0.261 0.739 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.412 0.588 31 H 0.432 0.568 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 -0.475 18.476 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.215 1.215 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.002 3.998 10 C 0.047 3.953 11 N -0.298 5.298 12 C 0.291 3.709 13 O -0.433 6.433 14 C 0.304 3.696 15 O -0.409 6.409 16 N -0.261 5.261 17 O -0.163 6.163 18 C -0.045 4.045 19 C -0.133 4.133 20 H 0.108 0.892 21 C -0.176 4.176 22 C -0.040 4.040 23 O -0.320 6.320 24 C -0.030 4.030 25 C -0.227 4.227 26 C -0.226 4.226 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.248 0.752 31 H 0.276 0.724 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.897 -0.279 18.732 19.963 hybrid contribution 0.224 1.004 -0.366 1.092 sum -6.673 0.725 18.366 19.554 Atomic orbital electron populations 1.69933 1.06640 1.27114 1.49128 1.25447 0.95355 1.01233 0.94094 0.85808 0.79625 0.80867 0.77248 1.19215 1.20711 1.21482 1.20732 0.93978 0.90039 1.49584 0.92534 1.19230 0.95298 0.89671 0.95617 1.21012 0.97910 0.95612 0.80777 1.45659 1.15198 1.57637 1.11274 1.19458 0.85487 0.81827 0.84080 1.90686 1.21028 1.49029 1.82601 1.20314 0.85198 0.80694 0.83379 1.90757 1.20135 1.49704 1.80289 1.46877 1.14950 1.56094 1.08221 1.90599 1.32827 1.74832 1.18087 1.23473 0.91370 1.02233 0.87450 1.22485 0.97817 0.99740 0.93229 0.89220 1.22948 0.98191 1.02980 0.93461 1.23671 0.80256 1.00740 0.99364 1.89131 1.24157 1.92527 1.26186 1.23539 1.00107 0.98760 0.80590 1.22936 1.00422 1.05473 0.93893 1.22991 0.96998 1.00306 1.02257 0.92937 0.93491 0.89362 0.75187 0.72388 0.89356 0.89496 0.88944 0.87827 0.87481 0.90985 0.91448 0.89580 0.89918 0.90572 0.90043 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.94 10.75 21.45 0.23 -46.71 16 2 C 0.04 2.08 5.13 84.66 0.43 2.52 16 3 Si 0.94 42.11 29.55 68.60 2.03 44.14 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.51 -25.48 8.27 25.60 0.21 -25.26 16 8 H 0.06 2.88 7.84 -2.91 -0.02 2.85 16 9 C 0.00 0.11 2.00 -52.93 -0.11 0.01 16 10 C 0.17 7.58 4.75 86.38 0.41 7.99 16 11 N -0.65 -27.83 5.27 -464.40 -2.45 -30.27 16 12 C 0.51 20.41 7.88 87.27 0.69 21.10 16 13 O -0.55 -22.56 16.48 -3.25 -0.05 -22.61 16 14 C 0.52 19.31 8.03 87.27 0.70 20.01 16 15 O -0.53 -22.94 16.89 14.18 0.24 -22.70 16 16 N -0.56 -15.90 6.38 -174.51 -1.11 -17.02 16 17 O -0.16 -4.20 11.02 -21.40 -0.24 -4.44 16 18 C 0.03 0.49 5.37 71.98 0.39 0.87 16 19 C -0.11 -1.68 3.39 -9.78 -0.03 -1.71 16 20 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 21 C -0.14 -1.29 6.74 31.61 0.21 -1.08 16 22 C 0.04 0.41 7.63 72.49 0.55 0.96 16 23 O -0.40 -7.85 11.65 -148.98 -1.74 -9.59 16 24 C 0.05 0.85 7.10 72.48 0.51 1.36 16 25 C -0.19 -7.72 9.96 30.62 0.30 -7.41 16 26 C -0.19 -7.29 9.92 30.62 0.30 -6.99 16 27 H 0.26 13.40 8.32 -92.71 -0.77 12.63 16 28 H 0.05 1.97 8.06 -2.39 -0.02 1.95 16 29 H 0.09 4.49 6.04 -2.39 -0.01 4.48 16 30 H 0.41 18.19 7.41 -92.71 -0.69 17.51 16 31 H 0.43 9.85 8.02 -92.71 -0.74 9.11 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.04 7.96 -2.39 -0.02 1.02 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.56 7.73 -2.38 -0.02 0.54 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 1.15 7.74 -2.39 -0.02 1.14 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 42 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -63.18 366.03 1.11 -62.08 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -0.39 Total: 34.75 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 4.58 Total: 12.37 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -3.33 Total: -94.00 kcal Atomic # 8 Polarization: -57.55 SS G_CDS: -1.79 Total: -59.34 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -63.18 1.11 -62.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261226895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.040 kcal (2) G-P(sol) polarization free energy of solvation -63.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds