Wall clock time and date at job start Fri Apr 10 2020 18:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33113 * 1 3 3 F 1.35100 * 120.00094 * 2 1 4 4 C 1.47298 * 120.00284 * 179.97438 * 2 1 3 5 5 O 1.21602 * 119.99700 * 0.02562 * 4 2 1 6 6 N 1.34780 * 120.00004 * 179.97438 * 4 2 1 7 7 C 1.47679 * 134.44977 * 180.02562 * 6 4 2 8 8 C 1.53393 * 85.95981 * 155.71678 * 7 6 4 9 9 C 1.47680 * 134.45336 * 359.95854 * 6 4 2 10 10 C 1.52552 * 113.84235 * 138.00910 * 8 7 6 11 11 N 1.46276 * 109.56364 * 176.53206 * 10 8 7 12 12 C 1.46502 * 118.71139 * 163.92353 * 11 10 8 13 13 C 1.52993 * 109.47055 * 90.00201 * 12 11 10 14 14 C 1.50704 * 109.47121 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99994 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00014 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99841 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99907 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47133 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47232 * 120.00113 * 18 16 14 21 21 H 1.48498 * 109.47297 * 240.00184 * 18 16 14 22 22 C 1.33714 * 122.57160 * 343.90101 * 11 10 8 23 23 O 1.21281 * 118.38321 * 183.23645 * 22 11 10 24 24 C 1.50164 * 123.23608 * 3.26194 * 22 11 10 25 25 O 1.42674 * 113.79276 * 268.69333 * 8 7 6 26 26 H 1.07998 * 119.99417 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00004 * 0.02562 * 1 2 3 28 28 H 1.09004 * 113.79612 * 41.45570 * 7 6 4 29 29 H 1.08997 * 113.79794 * 269.97564 * 7 6 4 30 30 H 1.09000 * 113.79599 * 90.01961 * 9 6 4 31 31 H 1.08998 * 113.79242 * 318.54574 * 9 6 4 32 32 H 1.08998 * 109.45161 * 56.50631 * 10 8 7 33 33 H 1.08998 * 109.45669 * 296.56268 * 10 8 7 34 34 H 1.09002 * 109.46641 * 210.00459 * 12 11 10 35 35 H 1.08996 * 109.47135 * 330.00115 * 12 11 10 36 36 H 1.09002 * 109.47607 * 299.99667 * 13 12 11 37 37 H 1.09003 * 109.47556 * 59.99738 * 13 12 11 38 38 H 0.97006 * 119.99630 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.35610 * 102.57694 * 24 22 11 40 40 H 1.09003 * 109.35174 * 222.28063 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3311 0.0000 0.0000 3 9 2.0067 1.1700 0.0000 4 6 2.0677 -1.2756 0.0006 5 8 1.4597 -2.3287 0.0006 6 7 3.4155 -1.2755 0.0000 7 6 4.4497 -2.3297 -0.0001 8 6 5.3694 -1.2759 -0.6300 9 6 4.4497 -0.2213 -0.0018 10 6 6.7855 -1.2751 -0.0626 11 7 7.6009 -0.2969 -0.7823 12 6 8.8709 0.1318 -0.1911 13 6 9.9936 -0.7904 -0.6705 14 6 11.3002 -0.3491 -0.0629 15 1 11.3270 0.5036 0.5993 16 6 12.4612 -1.0345 -0.3516 17 7 12.4284 -2.0732 -1.1576 18 14 14.0805 -0.4879 0.4022 19 1 13.8490 0.6969 1.2670 20 1 14.6449 -1.5930 1.2179 21 1 15.0350 -0.1333 -0.6788 22 6 7.2326 0.2209 -1.9588 23 8 7.9944 0.9812 -2.5178 24 6 5.9221 -0.0921 -2.6218 25 8 5.3530 -1.2765 -2.0566 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 4.2239 -3.1673 -0.6601 29 1 4.7584 -2.6431 0.9971 30 1 4.7583 0.0938 0.9950 31 1 4.2238 0.6151 -0.6632 32 1 7.2229 -2.2669 -0.1771 33 1 6.7528 -1.0128 0.9948 34 1 9.0864 1.1557 -0.4964 35 1 8.8004 0.0838 0.8955 36 1 9.7781 -1.8144 -0.3653 37 1 10.0642 -0.7425 -1.7572 38 1 13.2453 -2.5552 -1.3610 39 1 5.2359 0.7424 -2.4776 40 1 6.0847 -0.2458 -3.6886 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269284597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:08 Heat of formation + Delta-G solvation = -110.113856 kcal Electronic energy + Delta-G solvation = -26259.636251 eV Core-core repulsion = 22183.680935 eV Total energy + Delta-G solvation = -4075.955315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.132 amu Computer time = 8.20 seconds Orbital eigenvalues (eV) -49.94004 -42.51281 -40.88840 -39.59187 -37.39909 -36.99263 -35.11731 -33.35225 -32.31920 -31.36766 -29.07093 -27.89643 -27.52946 -26.31767 -24.34067 -23.40545 -21.93496 -20.50105 -19.78563 -19.01870 -18.71005 -18.64435 -17.74581 -17.53895 -17.07715 -17.02710 -16.58598 -16.43491 -16.14713 -15.91532 -15.73086 -15.17702 -15.06422 -14.58796 -14.44004 -14.39970 -14.22463 -14.03504 -13.82324 -13.59632 -13.31788 -13.27826 -12.87507 -12.80740 -12.56914 -12.23482 -11.89522 -11.81499 -11.54377 -11.37464 -11.17104 -10.59181 -10.58597 -10.47652 -9.94676 -9.68121 -8.21939 -6.33912 0.08650 1.39929 1.41461 1.42796 1.46531 1.54563 1.80571 1.89831 2.24677 2.41522 2.80250 3.03733 3.12247 3.16953 3.59187 3.62170 3.78025 4.03613 4.15195 4.27986 4.34451 4.36861 4.41689 4.48005 4.52274 4.54512 4.58019 4.65769 4.72407 4.75555 4.96021 5.16729 5.37110 5.46485 5.59215 5.68335 5.83272 6.17622 6.30110 6.41437 6.72638 6.82439 7.05565 7.35848 8.90454 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.028635 B = 0.002886 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.597775 B = 9699.310945 C = 9887.298111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.025 4.025 3 F -0.142 7.142 4 C 0.565 3.435 5 O -0.559 6.559 6 N -0.636 5.636 7 C 0.135 3.865 8 C 0.060 3.940 9 C 0.086 3.914 10 C 0.099 3.901 11 N -0.597 5.597 12 C 0.129 3.871 13 C 0.024 3.976 14 C -0.539 4.539 15 H 0.068 0.932 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.284 1.284 22 C 0.472 3.528 23 O -0.589 6.589 24 C 0.062 3.938 25 O -0.350 6.350 26 H 0.144 0.856 27 H 0.158 0.842 28 H 0.095 0.905 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.000 1.000 37 H -0.028 1.028 38 H 0.263 0.737 39 H 0.116 0.884 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.462 3.639 5.950 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 F -0.121 7.121 4 C 0.355 3.645 5 O -0.440 6.440 6 N -0.369 5.369 7 C 0.013 3.987 8 C 0.019 3.981 9 C -0.036 4.036 10 C -0.023 4.023 11 N -0.329 5.329 12 C 0.008 3.992 13 C -0.014 4.014 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.181 1.181 20 H -0.200 1.200 21 H -0.210 1.210 22 C 0.260 3.740 23 O -0.471 6.471 24 C -0.016 4.016 25 O -0.268 6.268 26 H 0.162 0.838 27 H 0.176 0.824 28 H 0.113 0.887 29 H 0.162 0.838 30 H 0.151 0.849 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.147 0.853 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.019 0.981 37 H -0.010 1.010 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.562 3.221 5.491 25.374 hybrid contribution 1.497 0.334 -0.155 1.542 sum -23.065 3.555 5.336 23.939 Atomic orbital electron populations 1.25262 0.92311 1.07260 0.89472 1.19730 0.92141 0.79981 1.12791 1.91508 1.80908 1.44991 1.94669 1.18287 0.80695 0.89069 0.76432 1.90834 1.67598 1.32767 1.52809 1.49818 1.03454 1.12024 1.71575 1.23372 0.80673 0.91877 1.02776 1.23088 0.93398 0.99231 0.82426 1.24135 0.82986 0.92613 1.03829 1.22175 0.88086 0.93539 0.98545 1.47713 1.21833 1.42529 1.20776 1.21544 0.81562 0.98200 0.97935 1.19180 0.93460 0.94581 0.94223 1.21593 0.93446 1.14181 1.28567 0.91426 1.26013 1.03462 0.94929 0.95545 1.70126 1.29190 1.20937 1.37202 0.85346 0.78428 0.78728 0.78218 1.18089 1.20021 1.21030 1.21479 0.90225 0.80784 0.81479 1.90749 1.54083 1.39204 1.63020 1.22818 0.89217 0.89851 0.99753 1.88127 1.80992 1.39790 1.17887 0.83791 0.82381 0.88673 0.83825 0.84892 0.88610 0.90222 0.85330 0.92391 0.88313 0.98139 1.00992 0.92817 0.86656 0.84368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 14.27 66.67 0.95 -0.15 16 2 C -0.02 -0.40 7.40 23.50 0.17 -0.23 16 3 F -0.14 -2.36 15.31 44.97 0.69 -1.67 16 4 C 0.56 12.06 8.00 86.63 0.69 12.75 16 5 O -0.56 -15.24 16.95 -4.04 -0.07 -15.31 16 6 N -0.64 -11.66 3.61 -854.31 -3.09 -14.74 16 7 C 0.13 2.12 8.24 86.28 0.71 2.83 16 8 C 0.06 1.11 1.16 -10.65 -0.01 1.10 16 9 C 0.09 1.30 6.88 86.28 0.59 1.89 16 10 C 0.10 2.14 5.88 86.27 0.51 2.65 16 11 N -0.60 -19.25 2.84 -825.55 -2.34 -21.59 16 12 C 0.13 5.13 5.20 86.38 0.45 5.58 16 13 C 0.02 1.24 5.29 29.85 0.16 1.40 16 14 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 15 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 16 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 17 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 18 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 19 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 22 C 0.47 16.24 7.57 87.65 0.66 16.90 16 23 O -0.59 -26.45 16.33 -3.03 -0.05 -26.50 16 24 C 0.06 1.51 6.65 71.07 0.47 1.98 16 25 O -0.35 -8.30 10.66 -148.98 -1.59 -9.89 16 26 H 0.14 1.52 7.50 -2.91 -0.02 1.50 16 27 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 28 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.14 1.36 8.10 -2.39 -0.02 1.34 16 30 H 0.13 1.35 7.91 -2.39 -0.02 1.33 16 31 H 0.10 1.47 6.26 -2.39 -0.01 1.46 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.13 1.85 7.77 -2.39 -0.02 1.83 16 34 H 0.06 2.52 7.29 -2.39 -0.02 2.50 16 35 H 0.10 3.25 7.96 -2.39 -0.02 3.23 16 36 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 37 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 38 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 39 H 0.12 2.14 7.16 -2.39 -0.02 2.12 16 40 H 0.14 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -81.78 345.73 2.99 -78.79 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.06 Total: 5.09 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 6.06 Total: 16.94 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -5.14 Total: -93.58 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -1.71 Total: -51.70 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.69 Total: -1.67 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -81.78 2.99 -78.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269284597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.322 kcal (2) G-P(sol) polarization free energy of solvation -81.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.20 seconds