Wall clock time and date at job start Fri Apr 10 2020 18:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47415 * 179.97438 * 10 9 7 12 12 C 1.46245 * 118.79471 * 90.00227 * 11 10 9 13 13 C 1.52175 * 109.95150 * 162.73442 * 12 11 10 14 14 C 1.54469 * 110.32675 * 284.84531 * 13 12 11 15 15 C 1.55032 * 101.52454 * 206.48269 * 14 13 12 16 16 N 1.47493 * 104.90122 * 36.34004 * 15 14 13 17 17 C 1.34774 * 125.66802 * 155.97370 * 16 15 14 18 18 O 1.21278 * 120.00255 * 180.02562 * 17 16 15 19 19 C 1.50698 * 119.99696 * 0.02562 * 17 16 15 20 20 O 1.42903 * 109.46933 * 180.02562 * 19 17 16 21 21 C 1.47197 * 108.66941 * 335.98531 * 16 15 14 22 22 O 1.42286 * 110.64788 * 47.18899 * 13 12 11 23 23 C 1.43072 * 113.24243 * 293.85451 * 22 13 12 24 24 C 1.33836 * 118.80135 * 269.73595 * 11 10 9 25 25 O 1.21285 * 118.64810 * 2.58681 * 24 11 10 26 26 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 27 27 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 28 28 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 29 29 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 30 30 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 31 31 H 1.09005 * 109.39336 * 282.88024 * 12 11 10 32 32 H 1.08996 * 109.39371 * 42.58491 * 12 11 10 33 33 H 1.08997 * 111.01301 * 324.54415 * 14 13 12 34 34 H 1.08995 * 111.01143 * 88.38575 * 14 13 12 35 35 H 1.09000 * 110.35188 * 155.18787 * 15 14 13 36 36 H 1.08996 * 110.35776 * 277.37446 * 15 14 13 37 37 H 1.08999 * 109.47098 * 300.00323 * 19 17 16 38 38 H 1.09000 * 109.47570 * 60.00377 * 19 17 16 39 39 H 0.96700 * 114.00074 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.91613 * 242.17441 * 21 16 15 41 41 H 1.09007 * 109.91134 * 120.89843 * 21 16 15 42 42 H 1.08999 * 109.39287 * 168.44376 * 23 22 13 43 43 H 1.08997 * 109.39525 * 288.25464 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 7 1.5128 -4.9308 0.0228 12 6 1.1602 -5.5469 -1.2558 13 6 0.8043 -7.0115 -1.0460 14 6 2.0825 -7.8453 -0.8071 15 6 1.6367 -9.2447 -1.3036 16 7 0.7601 -8.9758 -2.4588 17 6 0.5067 -9.8312 -3.4690 18 8 -0.2336 -9.5018 -4.3714 19 6 1.1433 -11.1971 -3.4772 20 8 0.7239 -11.9110 -4.6419 21 6 0.2081 -7.6178 -2.3254 22 8 -0.0925 -7.1580 0.0489 23 6 0.4915 -6.8095 1.3077 24 6 1.1954 -5.4864 1.1983 25 8 1.4841 -4.8957 2.2175 26 1 -0.4850 0.8401 -0.0041 27 1 0.6241 -2.5528 0.9015 28 1 0.6247 -2.5609 -0.8785 29 1 2.8719 -3.6083 -0.8736 30 1 2.8719 -3.6004 0.9064 31 1 0.3052 -5.0248 -1.6856 32 1 2.0070 -5.4744 -1.9382 33 1 2.9134 -7.4660 -1.4018 34 1 2.3411 -7.8696 0.2515 35 1 2.5022 -9.8307 -1.6128 36 1 1.0860 -9.7669 -0.5212 37 1 2.2282 -11.0923 -3.4867 38 1 0.8390 -11.7452 -2.5855 39 1 1.0956 -12.8009 -4.7129 40 1 -0.8778 -7.6648 -2.2427 41 1 0.4915 -7.0154 -3.1885 42 1 -0.2906 -6.7449 2.0641 43 1 1.2121 -7.5745 1.5966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270423565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:22 Heat of formation + Delta-G solvation = -142.131356 kcal Electronic energy + Delta-G solvation = -26720.785751 eV Core-core repulsion = 22766.902358 eV Total energy + Delta-G solvation = -3953.883393 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.38125 -39.92437 -38.42570 -36.84317 -36.20644 -35.53482 -33.14852 -31.95275 -30.29778 -30.10525 -28.58393 -27.42014 -25.71165 -24.59821 -23.63701 -22.01798 -20.67440 -19.87777 -18.60822 -18.32066 -17.84997 -16.99659 -16.58170 -16.52230 -16.08901 -16.00557 -15.67255 -15.22677 -14.88063 -14.61007 -14.43106 -14.02229 -13.69884 -13.48082 -13.41123 -13.03818 -12.90970 -12.73592 -12.63389 -12.44281 -12.18792 -11.89746 -11.60196 -11.35749 -11.25354 -10.94026 -10.71977 -10.70277 -10.41432 -10.09274 -9.93780 -9.88197 -9.37924 -9.06490 -9.05668 -8.37714 -8.19718 -6.02593 -4.06179 2.26598 2.30540 2.78630 3.04385 3.30781 3.35152 3.37734 3.41191 3.79193 3.94909 4.15432 4.19613 4.39288 4.44519 4.56479 4.61461 4.69593 4.79327 4.84371 4.95408 5.02349 5.27733 5.30018 5.33555 5.34048 5.39049 5.46457 5.54698 5.73257 5.78182 5.99712 6.42673 6.56899 6.75484 6.82039 6.97548 7.13311 7.53601 7.66440 7.81680 7.85557 7.96717 8.30637 8.42627 9.00259 9.57801 11.08844 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023143 B = 0.002895 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.593529 B = 9668.212616 C =10320.351820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.114 3.886 11 N -0.595 5.595 12 C 0.100 3.900 13 C 0.091 3.909 14 C -0.163 4.163 15 C 0.102 3.898 16 N -0.619 5.619 17 C 0.527 3.473 18 O -0.516 6.516 19 C 0.066 3.934 20 O -0.548 6.548 21 C 0.129 3.871 22 O -0.352 6.352 23 C 0.049 3.951 24 C 0.479 3.521 25 O -0.536 6.536 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.016 0.984 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.387 0.613 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -25.428 -3.565 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.024 4.024 10 C -0.006 4.006 11 N -0.328 5.328 12 C -0.024 4.024 13 C 0.050 3.950 14 C -0.201 4.201 15 C -0.021 4.021 16 N -0.356 5.356 17 C 0.315 3.685 18 O -0.390 6.390 19 C -0.015 4.015 20 O -0.353 6.353 21 C 0.007 3.993 22 O -0.271 6.271 23 C -0.030 4.030 24 C 0.265 3.735 25 O -0.413 6.413 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.234 0.766 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.149 0.851 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.275 -24.408 -3.740 25.060 hybrid contribution 0.974 0.577 0.265 1.162 sum 5.248 -23.831 -3.476 24.648 Atomic orbital electron populations 1.69974 1.06108 1.26719 1.50304 1.25008 0.94850 0.99317 0.95129 0.86553 0.79845 0.83296 0.78058 1.20638 1.21171 1.19809 1.21068 0.92971 0.90693 1.51331 0.92545 1.19352 0.94347 0.90958 0.97715 1.21979 0.95508 0.81547 1.01590 1.47699 1.56371 1.24205 1.04537 1.21824 1.02417 0.91016 0.87140 1.22119 0.90080 0.94402 0.88390 1.23444 0.98053 0.94791 1.03783 1.22394 0.93741 0.97648 0.88301 1.48422 1.48431 1.15561 1.23203 1.19971 0.81967 0.85706 0.80879 1.90766 1.36148 1.76827 1.35226 1.21788 0.98604 0.91239 0.89902 1.86589 1.73963 1.31946 1.42825 1.21675 1.00160 0.82395 0.95086 1.88056 1.37168 1.87661 1.14205 1.22899 0.99809 0.93178 0.87090 1.20690 0.80660 0.88117 0.84040 1.90774 1.54085 1.62321 1.34133 0.92908 0.95926 0.96614 0.91691 0.90571 0.89924 0.89308 0.88649 0.88705 0.90106 0.90434 0.90470 0.90429 0.76566 0.89179 0.88917 0.85128 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.01 0.37 5.29 -27.89 -0.15 0.22 16 10 C 0.11 2.32 5.23 -4.04 -0.02 2.30 16 11 N -0.60 -9.99 2.81 -174.84 -0.49 -10.48 16 12 C 0.10 1.28 5.25 -4.60 -0.02 1.26 16 13 C 0.09 0.94 0.83 -89.95 -0.07 0.87 16 14 C -0.16 -1.21 5.80 -24.89 -0.14 -1.36 16 15 C 0.10 0.61 6.69 -2.43 -0.02 0.59 16 16 N -0.62 -5.69 3.33 -170.68 -0.57 -6.26 16 17 C 0.53 5.82 7.93 -10.99 -0.09 5.73 16 18 O -0.52 -8.31 16.83 -14.35 -0.24 -8.55 16 19 C 0.07 0.43 6.54 36.00 0.24 0.67 16 20 O -0.55 -4.57 13.19 -55.14 -0.73 -5.30 16 21 C 0.13 1.34 6.24 -3.34 -0.02 1.32 16 22 O -0.35 -4.20 10.38 -35.23 -0.37 -4.57 16 23 C 0.05 0.59 6.36 35.79 0.23 0.81 16 24 C 0.48 8.14 7.38 -11.62 -0.09 8.05 16 25 O -0.54 -11.52 16.37 5.55 0.09 -11.43 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 30 H 0.08 1.66 7.29 -51.93 -0.38 1.28 16 31 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 32 H 0.09 0.95 7.74 -51.93 -0.40 0.55 16 33 H 0.09 0.65 7.83 -51.93 -0.41 0.25 16 34 H 0.09 0.69 5.82 -51.93 -0.30 0.38 16 35 H 0.08 0.28 7.48 -51.93 -0.39 -0.11 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.30 7.85 -51.93 -0.41 -0.11 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.39 0.89 9.12 45.56 0.42 1.31 16 40 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 41 H 0.09 0.93 7.81 -51.93 -0.41 0.53 16 42 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.09 0.76 6.52 -51.93 -0.34 0.43 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -39.43 353.53 -7.35 -46.78 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.52 Total: -2.81 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.57 Total: 7.00 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.32 Total: -43.16 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -1.24 Total: -29.85 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.43 -7.35 -46.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270423565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.350 kcal (2) G-P(sol) polarization free energy of solvation -39.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds