Wall clock time and date at job start Fri Apr 10 2020 18:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.47415 * 179.97438 * 10 9 7 12 12 C 1.46245 * 118.79471 * 90.00227 * 11 10 9 13 13 C 1.52175 * 109.95150 * 162.73442 * 12 11 10 14 14 C 1.54469 * 110.32675 * 284.84531 * 13 12 11 15 15 C 1.55032 * 101.52454 * 206.48269 * 14 13 12 16 16 N 1.47493 * 104.90122 * 36.34004 * 15 14 13 17 17 C 1.34774 * 125.66802 * 155.97370 * 16 15 14 18 18 O 1.21278 * 120.00255 * 180.02562 * 17 16 15 19 19 C 1.50698 * 119.99696 * 0.02562 * 17 16 15 20 20 O 1.42903 * 109.46933 * 180.02562 * 19 17 16 21 21 C 1.47197 * 108.66941 * 335.98531 * 16 15 14 22 22 O 1.42286 * 110.64788 * 47.18899 * 13 12 11 23 23 C 1.43072 * 113.24243 * 293.85451 * 22 13 12 24 24 C 1.33836 * 118.80135 * 269.73595 * 11 10 9 25 25 O 1.21285 * 118.64810 * 2.58681 * 24 11 10 26 26 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 27 27 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 28 28 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 29 29 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 30 30 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 31 31 H 1.09005 * 109.39336 * 282.88024 * 12 11 10 32 32 H 1.08996 * 109.39371 * 42.58491 * 12 11 10 33 33 H 1.08997 * 111.01301 * 324.54415 * 14 13 12 34 34 H 1.08995 * 111.01143 * 88.38575 * 14 13 12 35 35 H 1.09000 * 110.35188 * 155.18787 * 15 14 13 36 36 H 1.08996 * 110.35776 * 277.37446 * 15 14 13 37 37 H 1.08999 * 109.47098 * 300.00323 * 19 17 16 38 38 H 1.09000 * 109.47570 * 60.00377 * 19 17 16 39 39 H 0.96700 * 114.00074 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.91613 * 242.17441 * 21 16 15 41 41 H 1.09007 * 109.91134 * 120.89843 * 21 16 15 42 42 H 1.08999 * 109.39287 * 168.44376 * 23 22 13 43 43 H 1.08997 * 109.39525 * 288.25464 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 7 1.5128 -4.9308 0.0228 12 6 1.1602 -5.5469 -1.2558 13 6 0.8043 -7.0115 -1.0460 14 6 2.0825 -7.8453 -0.8071 15 6 1.6367 -9.2447 -1.3036 16 7 0.7601 -8.9758 -2.4588 17 6 0.5067 -9.8312 -3.4690 18 8 -0.2336 -9.5018 -4.3714 19 6 1.1433 -11.1971 -3.4772 20 8 0.7239 -11.9110 -4.6419 21 6 0.2081 -7.6178 -2.3254 22 8 -0.0925 -7.1580 0.0489 23 6 0.4915 -6.8095 1.3077 24 6 1.1954 -5.4864 1.1983 25 8 1.4841 -4.8957 2.2175 26 1 -0.4850 0.8401 -0.0041 27 1 0.6241 -2.5528 0.9015 28 1 0.6247 -2.5609 -0.8785 29 1 2.8719 -3.6083 -0.8736 30 1 2.8719 -3.6004 0.9064 31 1 0.3052 -5.0248 -1.6856 32 1 2.0070 -5.4744 -1.9382 33 1 2.9134 -7.4660 -1.4018 34 1 2.3411 -7.8696 0.2515 35 1 2.5022 -9.8307 -1.6128 36 1 1.0860 -9.7669 -0.5212 37 1 2.2282 -11.0923 -3.4867 38 1 0.8390 -11.7452 -2.5855 39 1 1.0956 -12.8009 -4.7129 40 1 -0.8778 -7.6648 -2.2427 41 1 0.4915 -7.0154 -3.1885 42 1 -0.2906 -6.7449 2.0641 43 1 1.2121 -7.5745 1.5966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270423565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:21 Heat of formation + Delta-G solvation = -174.655622 kcal Electronic energy + Delta-G solvation = -26722.196109 eV Core-core repulsion = 22766.902358 eV Total energy + Delta-G solvation = -3955.293751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36461 -40.88081 -39.51739 -37.49358 -37.05766 -36.99282 -35.15807 -33.01102 -31.84528 -30.98273 -29.32644 -28.70524 -26.75583 -26.29070 -24.29079 -23.60486 -22.01980 -20.58691 -19.66690 -18.99110 -18.82764 -18.71212 -17.77100 -17.39795 -17.11940 -16.95459 -16.71128 -16.51802 -16.16195 -15.84435 -15.40556 -15.12482 -14.74617 -14.59774 -14.38160 -14.30910 -14.11811 -14.06105 -13.80040 -13.45583 -13.25650 -13.08899 -12.87284 -12.67853 -12.53391 -12.37653 -12.22239 -11.91554 -11.82531 -11.50366 -11.28083 -11.12096 -10.92466 -10.61030 -10.42776 -9.80119 -9.71306 -8.24725 -6.37584 1.37681 1.40613 1.45447 1.51439 1.51831 1.63060 1.84329 2.38194 2.43493 3.09025 3.13901 3.23300 3.34477 3.56078 3.63704 3.83050 4.03685 4.07777 4.24221 4.28124 4.28992 4.31578 4.35868 4.45574 4.49582 4.53033 4.62677 4.65020 4.72189 4.87567 4.92119 5.02131 5.07361 5.14228 5.42136 5.54238 5.74839 5.81038 6.13788 6.35466 6.40804 6.78482 6.89780 7.05010 7.07583 7.32376 8.87638 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023143 B = 0.002895 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.593529 B = 9668.212616 C =10320.351820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.024 3.976 10 C 0.130 3.870 11 N -0.597 5.597 12 C 0.095 3.905 13 C 0.095 3.905 14 C -0.157 4.157 15 C 0.102 3.898 16 N -0.614 5.614 17 C 0.515 3.485 18 O -0.583 6.583 19 C 0.071 3.929 20 O -0.584 6.584 21 C 0.129 3.871 22 O -0.361 6.361 23 C 0.061 3.939 24 C 0.470 3.530 25 O -0.589 6.589 26 H 0.264 0.736 27 H -0.027 1.027 28 H -0.006 1.006 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.410 0.590 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.139 0.861 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.822 -27.560 -3.539 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.014 4.014 10 C 0.008 3.992 11 N -0.328 5.328 12 C -0.028 4.028 13 C 0.054 3.946 14 C -0.195 4.195 15 C -0.019 4.019 16 N -0.350 5.350 17 C 0.305 3.695 18 O -0.462 6.462 19 C -0.009 4.009 20 O -0.394 6.394 21 C 0.005 3.995 22 O -0.280 6.280 23 C -0.017 4.017 24 C 0.259 3.741 25 O -0.470 6.470 26 H 0.072 0.928 27 H -0.009 1.009 28 H 0.013 0.987 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.262 0.738 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.156 0.844 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.904 -26.605 -3.711 27.735 hybrid contribution 0.109 1.240 0.253 1.270 sum 7.013 -25.365 -3.458 26.542 Atomic orbital electron populations 1.70128 1.08096 1.27891 1.51396 1.26060 0.95765 1.03738 0.94475 0.85357 0.78542 0.77861 0.78739 1.19166 1.21068 1.18536 1.21556 0.93771 0.91764 1.50957 0.91363 1.19168 0.94610 0.93404 0.94204 1.21517 0.94157 0.81422 1.02125 1.47709 1.55805 1.23018 1.06249 1.22071 1.02693 0.92461 0.85586 1.22071 0.91619 0.92978 0.87915 1.23479 0.96391 0.94864 1.04749 1.22675 0.94655 0.97176 0.87371 1.48499 1.48162 1.14584 1.23726 1.21006 0.81153 0.87328 0.79971 1.90731 1.39292 1.78341 1.37840 1.21944 1.00009 0.88464 0.90508 1.86527 1.75019 1.33891 1.43939 1.21528 0.99167 0.83736 0.95047 1.88063 1.38125 1.87273 1.14528 1.22931 1.00518 0.90913 0.87339 1.21741 0.79772 0.89553 0.83058 1.90745 1.56235 1.64188 1.35874 0.92758 1.00851 0.98741 0.88955 0.92015 0.92007 0.86748 0.87490 0.87754 0.86194 0.88971 0.86825 0.87198 0.73824 0.91186 0.89223 0.84388 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.29 21.45 0.28 -58.50 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -31.28 9.11 25.60 0.23 -31.04 16 8 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.02 1.32 5.29 29.85 0.16 1.48 16 10 C 0.13 5.37 5.23 86.38 0.45 5.82 16 11 N -0.60 -20.08 2.81 -826.00 -2.32 -22.40 16 12 C 0.09 2.38 5.25 86.15 0.45 2.84 16 13 C 0.09 1.81 0.83 -10.36 -0.01 1.80 16 14 C -0.16 -1.73 5.80 31.79 0.18 -1.55 16 15 C 0.10 0.75 6.69 86.89 0.58 1.33 16 16 N -0.61 -9.85 3.33 -812.31 -2.71 -12.56 16 17 C 0.52 10.56 7.93 87.66 0.69 11.26 16 18 O -0.58 -19.16 16.83 16.02 0.27 -18.89 16 19 C 0.07 0.68 6.54 71.24 0.47 1.14 16 20 O -0.58 -8.55 13.19 -129.94 -1.71 -10.26 16 21 C 0.13 2.59 6.24 86.46 0.54 3.13 16 22 O -0.36 -8.07 10.38 -148.98 -1.55 -9.62 16 23 C 0.06 1.35 6.36 71.10 0.45 1.80 16 24 C 0.47 15.96 7.38 87.67 0.65 16.61 16 25 O -0.59 -26.05 16.37 -3.05 -0.05 -26.10 16 26 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 27 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 28 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H 0.09 3.28 7.95 -2.39 -0.02 3.26 16 30 H 0.06 2.74 7.29 -2.39 -0.02 2.72 16 31 H 0.06 1.80 8.13 -2.38 -0.02 1.78 16 32 H 0.11 2.27 7.74 -2.39 -0.02 2.25 16 33 H 0.11 0.99 7.83 -2.39 -0.02 0.97 16 34 H 0.10 1.01 5.82 -2.39 -0.01 1.00 16 35 H 0.12 0.04 7.48 -2.39 -0.02 0.02 16 36 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.11 0.27 7.85 -2.39 -0.02 0.25 16 38 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.41 0.85 9.12 -74.06 -0.68 0.17 16 40 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 41 H 0.09 1.83 7.81 -2.38 -0.02 1.81 16 42 H 0.14 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.13 1.78 6.52 -2.39 -0.02 1.77 16 Total: -1.00 -92.77 353.53 -0.09 -92.85 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 0.36 Total: 3.65 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 5.31 Total: 14.92 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -4.75 Total: -93.46 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -3.04 Total: -64.86 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -92.77 -0.09 -92.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270423565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.802 kcal (2) G-P(sol) polarization free energy of solvation -92.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds