Wall clock time and date at job start Fri Apr 10 2020 18:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99812 * 2 1 4 4 H 1.48504 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47177 * 300.00264 * 3 2 1 6 6 H 1.48498 * 109.46877 * 60.00539 * 3 2 1 7 7 C 1.37877 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47122 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47170 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00181 * 179.97438 * 11 10 9 13 13 O 1.21350 * 120.00165 * 359.97438 * 12 11 10 14 14 C 1.49456 * 120.00076 * 179.97438 * 12 11 10 15 15 O 1.21350 * 119.99759 * 0.02562 * 14 12 11 16 16 N 1.34776 * 120.00076 * 179.97438 * 14 12 11 17 17 C 1.46496 * 120.00181 * 180.02562 * 16 14 12 18 18 C 1.52998 * 109.47170 * 180.02562 * 17 16 14 19 19 N 1.46504 * 109.47172 * 179.97438 * 18 17 16 20 20 C 1.34771 * 124.17359 * 89.99722 * 19 18 17 21 21 O 1.21225 * 127.16028 * 0.06992 * 20 19 18 22 22 C 1.51585 * 105.68254 * 180.02562 * 20 19 18 23 23 N 1.47317 * 103.59313 * 359.97438 * 22 20 19 24 24 C 1.33785 * 124.17976 * 270.30611 * 19 18 17 25 25 O 1.21542 * 123.77022 * 359.97438 * 24 19 18 26 26 H 0.96998 * 119.99987 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99951 * 9 7 2 28 28 H 1.08998 * 109.46879 * 299.99837 * 9 7 2 29 29 H 1.09000 * 109.47340 * 59.99955 * 10 9 7 30 30 H 1.09006 * 109.46682 * 299.99756 * 10 9 7 31 31 H 0.97003 * 119.99944 * 359.97438 * 11 10 9 32 32 H 0.97003 * 119.99875 * 0.02562 * 16 14 12 33 33 H 1.09000 * 109.47189 * 59.99866 * 17 16 14 34 34 H 1.09003 * 109.46609 * 300.00266 * 17 16 14 35 35 H 1.09000 * 109.47340 * 59.99755 * 18 17 16 36 36 H 1.08998 * 109.46969 * 299.99408 * 18 17 16 37 37 H 1.08998 * 110.59926 * 241.47169 * 22 20 19 38 38 H 1.09003 * 110.73128 * 118.58762 * 22 20 19 39 39 H 0.97001 * 126.68790 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0980 -0.0018 13 8 3.4002 -6.0980 -0.0023 14 6 1.4394 -7.3923 -0.0018 15 8 0.2259 -7.3923 -0.0018 16 7 2.1133 -8.5595 -0.0030 17 6 1.3809 -9.8282 -0.0036 18 6 2.3751 -10.9911 -0.0043 19 7 1.6426 -12.2599 -0.0043 20 6 1.2637 -12.9152 -1.1193 21 8 1.4582 -12.5795 -2.2678 22 6 0.5445 -14.1600 -0.6385 23 7 0.6083 -14.0516 0.8293 24 6 1.2622 -12.9081 1.1025 25 8 1.4859 -12.5104 2.2290 26 1 -0.4850 0.8400 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8720 -3.6044 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 0.5428 -4.9308 -0.0011 32 1 3.0833 -8.5595 -0.0034 33 1 0.7538 -9.8853 -0.8933 34 1 0.7546 -9.8865 0.8866 35 1 3.0019 -10.9338 0.8857 36 1 3.0016 -10.9329 -0.8943 37 1 1.0613 -15.0572 -0.9792 38 1 -0.4911 -14.1629 -0.9785 39 1 0.2453 -14.6798 1.4731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323479176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:12:53 Heat of formation + Delta-G solvation = -145.506239 kcal Electronic energy + Delta-G solvation = -24529.250327 eV Core-core repulsion = 20471.680245 eV Total energy + Delta-G solvation = -4057.570083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.36778 -41.74645 -39.73710 -39.68977 -37.35813 -37.21711 -36.70025 -35.24345 -34.75300 -31.71610 -30.86919 -28.61013 -27.49106 -25.87604 -24.15346 -23.85861 -22.81101 -21.89430 -21.25220 -19.73021 -19.03566 -18.59388 -18.28823 -17.86968 -17.70053 -17.25006 -16.79675 -16.54361 -16.31913 -16.22219 -16.15553 -16.08613 -15.32697 -15.21471 -15.00745 -14.91640 -14.41296 -14.34877 -14.31426 -13.52109 -13.25924 -12.96873 -12.91322 -12.80696 -12.51473 -12.30086 -12.16488 -11.69438 -11.42815 -11.38039 -11.11647 -10.76266 -10.62839 -10.51507 -10.42249 -10.21768 -8.23954 -6.35071 0.25794 0.59445 0.88221 1.40210 1.42383 1.44572 1.56667 1.88139 2.06180 2.26306 2.39748 2.65498 3.04995 3.11062 3.37713 3.52398 3.62477 4.11877 4.14830 4.31779 4.34010 4.37974 4.45033 4.50551 4.64308 4.74632 4.80977 4.96323 5.05700 5.41765 5.54409 5.73893 5.82992 5.83884 5.97521 6.12320 6.29588 6.34553 6.63434 6.78738 6.87565 7.07383 7.34514 8.88307 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.039611 B = 0.001891 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.713085 B =14803.740869 C =14825.829508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.017 3.983 10 C 0.138 3.862 11 N -0.688 5.688 12 C 0.503 3.497 13 O -0.545 6.545 14 C 0.517 3.483 15 O -0.540 6.540 16 N -0.683 5.683 17 C 0.109 3.891 18 C 0.111 3.889 19 N -0.577 5.577 20 C 0.515 3.485 21 O -0.498 6.498 22 C 0.074 3.926 23 N -0.708 5.708 24 C 0.695 3.305 25 O -0.583 6.583 26 H 0.265 0.735 27 H 0.008 0.992 28 H 0.007 0.993 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.414 0.586 32 H 0.425 0.575 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.162 0.838 38 H 0.156 0.844 39 H 0.455 0.545 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.704 -34.379 -1.244 34.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.339 5.339 12 C 0.284 3.716 13 O -0.423 6.423 14 C 0.297 3.703 15 O -0.417 6.417 16 N -0.338 5.338 17 C -0.015 4.015 18 C -0.011 4.011 19 N -0.324 5.324 20 C 0.305 3.695 21 O -0.369 6.369 22 C -0.052 4.052 23 N -0.373 5.373 24 C 0.395 3.605 25 O -0.459 6.459 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.251 0.749 32 H 0.264 0.736 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.179 0.821 38 H 0.174 0.826 39 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 1.829 -33.828 -1.306 33.902 hybrid contribution -0.098 1.007 0.338 1.067 sum 1.731 -32.820 -0.968 32.880 Atomic orbital electron populations 1.70087 1.07705 1.27964 1.51059 1.25941 0.95803 1.03361 0.94470 0.85333 0.79065 0.78516 0.77734 1.18556 1.20400 1.20418 1.21484 0.93793 0.91508 1.51374 0.91619 1.19191 0.94383 0.91977 0.96470 1.21501 0.95081 0.80622 1.01297 1.46071 1.11946 1.05469 1.70426 1.20170 0.87518 0.85497 0.78463 1.90724 1.13768 1.87802 1.50051 1.19992 0.87187 0.85450 0.77628 1.90769 1.14223 1.87743 1.48963 1.45358 1.12048 1.04012 1.72352 1.21694 0.95270 0.81498 1.03070 1.21723 0.93388 0.78843 1.07161 1.46276 1.53966 1.23261 1.08887 1.21683 0.77580 0.86279 0.83969 1.90862 1.55097 1.71893 1.19023 1.22743 1.05632 0.97169 0.79621 1.45411 1.59627 1.23233 1.09066 1.16060 0.79042 0.81931 0.83486 1.91042 1.61622 1.71298 1.21940 0.92585 0.97382 0.97430 0.91877 0.91836 0.74927 0.73638 0.90834 0.91237 0.86854 0.86182 0.82114 0.82635 0.69777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.02 0.88 5.09 29.85 0.15 1.03 16 10 C 0.14 5.78 5.61 86.38 0.48 6.27 16 11 N -0.69 -25.28 5.55 -464.41 -2.58 -27.86 16 12 C 0.50 17.07 7.89 87.27 0.69 17.76 16 13 O -0.54 -19.90 16.48 -3.25 -0.05 -19.95 16 14 C 0.52 15.29 7.89 87.27 0.69 15.98 16 15 O -0.54 -18.45 16.48 -3.25 -0.05 -18.51 16 16 N -0.68 -14.75 5.55 -464.41 -2.58 -17.33 16 17 C 0.11 2.01 6.00 86.38 0.52 2.53 16 18 C 0.11 1.45 5.81 86.38 0.50 1.95 16 19 N -0.58 -7.16 2.60 -773.13 -2.01 -9.17 16 20 C 0.52 5.20 8.32 87.94 0.73 5.93 16 21 O -0.50 -8.58 17.76 -2.86 -0.05 -8.63 16 22 C 0.07 -0.02 7.97 85.76 0.68 0.66 16 23 N -0.71 -2.65 6.58 -480.29 -3.16 -5.81 16 24 C 0.69 9.48 8.62 179.44 1.55 11.03 16 25 O -0.58 -13.24 17.48 -3.85 -0.07 -13.31 16 26 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.41 14.74 7.94 -92.71 -0.74 14.01 16 32 H 0.43 7.55 7.94 -92.71 -0.74 6.81 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.39 7.87 -2.39 -0.02 1.37 16 36 H 0.12 1.26 8.00 -2.39 -0.02 1.24 16 37 H 0.16 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H 0.16 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.45 -0.34 8.96 -92.71 -0.83 -1.18 16 Total: -1.00 -79.88 352.31 -2.72 -82.61 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -1.17 Total: 13.30 kcal Atomic # 6 Polarization: 27.20 SS G_CDS: 6.69 Total: 33.89 kcal Atomic # 7 Polarization: -105.00 SS G_CDS: -10.04 Total: -115.04 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -0.23 Total: -60.40 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -79.88 -2.72 -82.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323479176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.900 kcal (2) G-P(sol) polarization free energy of solvation -79.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds