Wall clock time and date at job start Fri Apr 10 2020 18:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00220 * 2 1 4 4 H 1.48495 * 109.47482 * 240.00441 * 3 2 1 5 5 H 1.48504 * 109.46918 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46872 * 120.00352 * 3 2 1 7 7 C 1.37879 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00043 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.88538 * 303.87889 * 9 7 2 11 11 C 1.55154 * 111.00242 * 180.02562 * 9 7 2 12 12 C 1.54323 * 102.94501 * 206.42250 * 11 9 7 13 13 N 1.47022 * 107.26850 * 22.19019 * 12 11 9 14 14 C 1.34776 * 125.64984 * 181.01937 * 13 12 11 15 15 O 1.21349 * 119.99957 * 180.02562 * 14 13 12 16 16 C 1.49453 * 119.99966 * 0.03359 * 14 13 12 17 17 O 1.21352 * 119.99697 * 359.97438 * 16 14 13 18 18 N 1.34768 * 120.00310 * 179.97438 * 16 14 13 19 19 C 1.47432 * 125.64454 * 359.94738 * 18 16 14 20 20 C 1.54918 * 104.82768 * 155.91524 * 19 18 16 21 21 C 1.55157 * 101.58155 * 37.01006 * 20 19 18 22 22 C 1.47019 * 125.65144 * 179.97438 * 18 16 14 23 23 H 1.08996 * 109.88438 * 300.43360 * 22 18 16 24 24 C 1.52997 * 109.88029 * 61.60023 * 22 18 16 25 25 O 1.42896 * 109.47320 * 292.80653 * 24 22 18 26 26 C 1.47422 * 108.70269 * 1.29334 * 13 12 11 27 27 H 0.97002 * 119.99912 * 359.97438 * 1 2 3 28 28 H 0.96701 * 113.99896 * 56.12265 * 10 9 7 29 29 H 1.09004 * 110.72356 * 88.05905 * 11 9 7 30 30 H 1.09004 * 110.72618 * 324.79115 * 11 9 7 31 31 H 1.09007 * 109.87869 * 262.77942 * 12 11 9 32 32 H 1.08994 * 109.88251 * 141.61263 * 12 11 9 33 33 H 1.08998 * 110.36717 * 37.07786 * 19 18 16 34 34 H 1.08991 * 110.36739 * 274.75039 * 19 18 16 35 35 H 1.09001 * 111.00522 * 278.93064 * 20 19 18 36 36 H 1.09000 * 110.99891 * 155.08094 * 20 19 18 37 37 H 1.08997 * 110.72139 * 82.86281 * 21 20 19 38 38 H 1.08998 * 110.71501 * 206.13223 * 21 20 19 39 39 H 1.09003 * 109.47591 * 52.80915 * 24 22 18 40 40 H 1.09001 * 109.47252 * 172.80766 * 24 22 18 41 41 H 0.96702 * 114.00654 * 180.02562 * 25 24 22 42 42 H 1.08999 * 110.37388 * 94.47696 * 26 13 12 43 43 H 1.09001 * 110.36774 * 216.80170 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3521 -2.5685 1.1082 11 6 2.2273 -3.7050 -0.0005 12 6 1.3980 -4.8213 -0.6698 13 7 0.3470 -4.1679 -1.4635 14 6 -0.5993 -4.7999 -2.1857 15 8 -1.4204 -4.1563 -2.8055 16 6 -0.6375 -6.2935 -2.2230 17 8 0.1838 -6.9371 -1.6035 18 7 -1.5841 -6.9256 -2.9447 19 6 -2.6386 -6.2704 -3.7398 20 6 -3.0333 -7.3158 -4.8129 21 6 -2.9323 -8.6396 -4.0100 22 6 -1.7364 -8.3826 -3.0691 23 1 -0.8306 -8.8151 -3.4939 24 6 -2.0145 -8.9958 -1.6952 25 8 -0.8579 -8.8552 -0.8679 26 6 0.5036 -2.7069 -1.3439 27 1 -0.4850 0.8401 0.0004 28 1 -0.2774 -1.8356 1.1506 29 1 2.4968 -3.9831 1.0184 30 1 3.1174 -3.4807 -0.5883 31 1 0.9462 -5.4555 0.0930 32 1 2.0369 -5.4183 -1.3205 33 1 -2.2514 -5.3683 -4.2134 34 1 -3.4954 -6.0314 -3.1099 35 1 -2.3281 -7.3079 -5.6440 36 1 -4.0514 -7.1490 -5.1648 37 1 -3.8433 -8.8140 -3.4376 38 1 -2.7265 -9.4787 -4.6745 39 1 -2.8571 -8.4824 -1.2320 40 1 -2.2522 -10.0532 -1.8107 41 1 -0.9624 -9.2231 0.0203 42 1 1.0950 -2.3195 -2.1735 43 1 -0.4721 -2.2220 -1.3136 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326213264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:17 Heat of formation + Delta-G solvation = -172.537767 kcal Electronic energy + Delta-G solvation = -27552.401949 eV Core-core repulsion = 23597.200035 eV Total energy + Delta-G solvation = -3955.201914 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.89863 -40.43601 -38.93688 -38.54350 -37.13168 -36.11965 -34.17773 -32.69013 -31.94884 -31.24990 -29.73982 -27.73296 -26.29525 -25.57857 -23.95740 -22.73296 -21.62059 -21.38186 -20.03207 -19.19770 -18.35021 -18.19269 -17.91758 -17.56925 -17.06212 -16.93001 -16.38908 -16.16006 -15.41896 -15.30858 -15.05421 -14.86475 -14.69577 -14.47276 -14.22277 -14.04047 -13.80025 -13.50123 -13.35970 -13.23430 -12.83320 -12.75546 -12.60168 -12.53495 -12.32221 -12.28661 -12.18963 -12.13495 -11.85629 -11.63451 -11.25364 -10.85469 -10.68231 -10.47788 -10.27376 -9.81851 -9.55943 -8.27211 -6.44422 0.44947 1.24728 1.45099 1.45941 1.53985 2.20241 2.35603 2.45018 2.98565 3.19278 3.26452 3.64349 3.76381 3.79632 4.06743 4.10472 4.14287 4.19627 4.29390 4.30984 4.43494 4.55539 4.60746 4.64649 4.72089 4.87536 4.91678 4.94877 5.01693 5.03920 5.09499 5.14837 5.28831 5.31386 5.34605 5.41004 5.73594 6.00068 6.16881 6.33573 6.60313 6.67744 6.95498 7.03929 7.27949 7.37328 8.78880 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.003623 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.038062 B = 7726.210238 C = 8380.426428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.235 3.765 10 O -0.590 6.590 11 C -0.115 4.115 12 C 0.124 3.876 13 N -0.584 5.584 14 C 0.500 3.500 15 O -0.557 6.557 16 C 0.515 3.485 17 O -0.493 6.493 18 N -0.592 5.592 19 C 0.088 3.912 20 C -0.123 4.123 21 C -0.111 4.111 22 C 0.126 3.874 23 H 0.074 0.926 24 C 0.062 3.938 25 O -0.570 6.570 26 C 0.106 3.894 27 H 0.272 0.728 28 H 0.378 0.622 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.381 0.619 42 H 0.058 0.942 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.439 -17.965 -7.717 20.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.173 4.173 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.596 4.596 8 H 0.090 0.910 9 C 0.194 3.806 10 O -0.399 6.399 11 C -0.153 4.153 12 C 0.002 3.998 13 N -0.316 5.316 14 C 0.284 3.716 15 O -0.437 6.437 16 C 0.297 3.703 17 O -0.366 6.366 18 N -0.328 5.328 19 C -0.034 4.034 20 C -0.161 4.161 21 C -0.148 4.148 22 C 0.024 3.976 23 H 0.092 0.908 24 C -0.017 4.017 25 O -0.376 6.376 26 C -0.017 4.017 27 H 0.082 0.918 28 H 0.229 0.771 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.229 0.771 42 H 0.076 0.924 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.984 -18.136 -8.101 20.745 hybrid contribution -0.290 1.620 0.574 1.743 sum -6.274 -16.517 -7.527 19.205 Atomic orbital electron populations 1.69667 1.07244 1.28753 1.50123 1.25843 0.95778 1.02900 0.92801 0.85444 0.78255 0.77986 0.78970 1.19408 1.20937 1.19493 1.21782 0.94134 0.90949 1.52709 0.90986 1.19868 0.86143 0.93226 0.81370 1.86081 1.51238 1.52592 1.50027 1.22734 0.97664 0.93430 1.01459 1.22079 0.88527 0.94901 0.94285 1.48663 1.28872 1.09051 1.44986 1.20376 0.81396 0.89424 0.80377 1.90633 1.39641 1.68514 1.44936 1.19481 0.82681 0.87107 0.81062 1.90788 1.37789 1.66613 1.41425 1.48369 1.29150 1.08136 1.47149 1.22746 0.89675 0.97619 0.93386 1.22844 1.04102 0.92742 0.96370 1.22677 0.96133 0.98995 0.97030 1.22065 1.00905 0.78524 0.96092 0.90793 1.22698 0.87999 1.00329 0.90628 1.86894 1.37847 1.84304 1.28555 1.23109 1.00677 0.77089 1.00781 0.91821 0.77096 0.89716 0.88907 0.91630 0.90226 0.90659 0.91475 0.90163 0.86901 0.88426 0.86751 0.94115 0.89619 0.77089 0.92393 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.88 10.72 21.45 0.23 -49.65 16 2 C 0.03 1.43 5.30 84.66 0.45 1.88 16 3 Si 0.97 41.58 29.54 68.60 2.03 43.60 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.56 -29.32 8.25 25.60 0.21 -29.11 16 8 H 0.07 3.64 7.76 -2.91 -0.02 3.62 16 9 C 0.23 11.80 0.89 -10.07 -0.01 11.79 16 10 O -0.59 -31.78 13.19 -148.98 -1.97 -33.74 16 11 C -0.12 -4.82 6.12 31.78 0.19 -4.62 16 12 C 0.12 5.05 5.49 86.73 0.48 5.52 16 13 N -0.58 -26.46 3.32 -812.93 -2.70 -29.16 16 14 C 0.50 21.85 7.88 87.27 0.69 22.54 16 15 O -0.56 -25.79 14.03 -3.24 -0.05 -25.84 16 16 C 0.52 19.45 7.63 87.27 0.67 20.11 16 17 O -0.49 -19.55 11.42 19.75 0.23 -19.32 16 18 N -0.59 -17.38 3.06 -789.62 -2.42 -19.80 16 19 C 0.09 2.19 6.06 86.86 0.53 2.71 16 20 C -0.12 -1.72 7.08 31.99 0.23 -1.50 16 21 C -0.11 -1.26 6.48 31.78 0.21 -1.05 16 22 C 0.13 2.65 3.29 45.34 0.15 2.80 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 C 0.06 1.22 6.46 71.98 0.46 1.68 16 25 O -0.57 -15.08 10.37 -125.98 -1.31 -16.39 16 26 C 0.11 5.32 5.65 86.93 0.49 5.81 16 27 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.38 21.13 6.93 -74.06 -0.51 20.62 16 29 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 30 H 0.09 3.55 8.01 -2.38 -0.02 3.53 16 31 H 0.07 2.73 7.58 -2.38 -0.02 2.71 16 32 H 0.08 2.97 7.69 -2.39 -0.02 2.96 16 33 H 0.08 2.30 6.16 -2.39 -0.01 2.29 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.10 0.82 7.85 -2.39 -0.02 0.80 16 38 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.38 6.98 9.12 -74.06 -0.68 6.30 16 42 H 0.06 2.94 8.03 -2.39 -0.02 2.92 16 43 H 0.05 2.92 7.64 -2.39 -0.02 2.90 16 Total: -1.00 -69.49 343.80 -1.36 -70.85 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.14 Total: 40.87 kcal Atomic # 6 Polarization: 33.83 SS G_CDS: 4.74 Total: 38.57 kcal Atomic # 7 Polarization: -93.72 SS G_CDS: -4.89 Total: -98.61 kcal Atomic # 8 Polarization: -92.20 SS G_CDS: -3.09 Total: -95.29 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -69.49 -1.36 -70.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326213264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.687 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds