Wall clock time and date at job start Fri Apr 10 2020 18:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99709 * 2 1 4 4 H 1.48500 * 109.47182 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47315 * 120.00150 * 3 2 1 6 6 H 1.48503 * 109.46912 * 240.00054 * 3 2 1 7 7 C 1.37880 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99735 * 19.23839 * 7 2 1 9 9 C 1.50696 * 120.00132 * 199.23567 * 7 2 1 10 10 O 1.42901 * 110.88496 * 61.18835 * 9 7 2 11 11 C 1.55163 * 111.00459 * 185.06890 * 9 7 2 12 12 C 1.54321 * 102.94023 * 153.57594 * 11 9 7 13 13 N 1.47022 * 107.27551 * 337.80906 * 12 11 9 14 14 C 1.34773 * 125.64919 * 178.98681 * 13 12 11 15 15 O 1.21348 * 119.99787 * 179.97438 * 14 13 12 16 16 C 1.49450 * 120.00123 * 359.97361 * 14 13 12 17 17 O 1.21349 * 119.99631 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99963 * 179.97438 * 16 14 13 19 19 C 1.47419 * 125.64881 * 359.70018 * 18 16 14 20 20 C 1.55123 * 104.72225 * 155.81200 * 19 18 16 21 21 C 1.55158 * 101.48793 * 37.29412 * 20 19 18 22 22 C 1.47017 * 125.64581 * 179.97438 * 18 16 14 23 23 H 1.09004 * 109.88572 * 300.44329 * 22 18 16 24 24 C 1.52997 * 109.88597 * 61.60891 * 22 18 16 25 25 O 1.42905 * 109.47249 * 293.54639 * 24 22 18 26 26 C 1.47427 * 108.70066 * 358.93727 * 13 12 11 27 27 H 0.97004 * 119.99777 * 174.91950 * 1 2 3 28 28 H 0.96696 * 114.00087 * 306.16748 * 10 9 7 29 29 H 1.09000 * 110.71578 * 271.94460 * 11 9 7 30 30 H 1.09001 * 110.71534 * 35.21461 * 11 9 7 31 31 H 1.08996 * 109.88047 * 97.23004 * 12 11 9 32 32 H 1.08999 * 109.87926 * 218.23661 * 12 11 9 33 33 H 1.09006 * 110.36339 * 274.73857 * 19 18 16 34 34 H 1.08997 * 110.36989 * 37.06005 * 19 18 16 35 35 H 1.09002 * 111.19504 * 279.18554 * 20 19 18 36 36 H 1.09004 * 110.94109 * 155.28559 * 20 19 18 37 37 H 1.08997 * 110.72245 * 205.96756 * 21 20 19 38 38 H 1.08999 * 110.71973 * 82.69533 * 21 20 19 39 39 H 1.09003 * 109.46882 * 53.54271 * 24 22 18 40 40 H 1.09003 * 109.47589 * 173.54484 * 24 22 18 41 41 H 0.96699 * 114.00183 * 179.97438 * 25 24 22 42 42 H 1.08993 * 110.36839 * 265.29386 * 26 13 12 43 43 H 1.09000 * 110.36319 * 142.96831 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.5099 -2.1034 -0.3073 9 6 3.4485 -1.2302 0.4305 10 8 3.5872 -0.8002 1.7862 11 6 4.0528 -2.6454 0.2313 12 6 5.5571 -2.3557 0.0452 13 7 5.6814 -0.9586 -0.3957 14 6 6.8380 -0.3148 -0.6490 15 8 6.8212 0.8437 -1.0097 16 6 8.1414 -1.0277 -0.4857 17 8 8.1581 -2.1864 -0.1254 18 7 9.2980 -0.3840 -0.7395 19 6 9.4222 1.0146 -1.1887 20 6 10.8431 1.4475 -0.7414 21 6 11.6534 0.1469 -0.9849 22 6 10.6444 -0.9621 -0.6196 23 1 10.8148 -1.2960 0.4039 24 6 10.7932 -2.1393 -1.5855 25 8 9.9258 -3.2004 -1.1806 26 6 4.3312 -0.3790 -0.5161 27 1 -0.4850 -0.8368 -0.0744 28 1 3.1931 0.0641 1.9670 29 1 3.8853 -3.2638 1.1131 30 1 3.6385 -3.1198 -0.6583 31 1 6.0810 -2.4939 0.9909 32 1 5.9725 -3.0234 -0.7096 33 1 9.3286 1.0744 -2.2730 34 1 8.6675 1.6362 -0.7070 35 1 10.8570 1.7249 0.3126 36 1 11.2158 2.2620 -1.3626 37 1 12.5241 0.1067 -0.3305 38 1 11.9516 0.0684 -2.0304 39 1 10.5286 -1.8182 -2.5930 40 1 11.8253 -2.4897 -1.5752 41 1 9.9675 -3.9812 -1.7494 42 1 3.9739 -0.4596 -1.5426 43 1 4.3358 0.6628 -0.1957 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326213265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:21 Heat of formation + Delta-G solvation = -135.875003 kcal Electronic energy + Delta-G solvation = -27723.232583 eV Core-core repulsion = 23769.620486 eV Total energy + Delta-G solvation = -3953.612097 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65705 -39.23727 -37.59361 -37.27071 -36.26868 -34.56122 -32.54502 -31.74427 -30.43525 -30.37466 -28.49271 -25.96139 -25.24547 -23.87115 -22.60559 -21.89066 -20.53542 -19.90369 -18.80740 -17.82611 -17.37258 -17.04500 -16.86933 -16.44563 -15.81808 -15.51254 -15.05281 -14.59677 -14.38031 -14.04444 -13.82059 -13.53134 -13.43035 -13.18096 -13.15558 -12.85539 -12.65500 -12.31777 -12.29485 -11.94344 -11.61397 -11.48940 -11.41623 -11.14997 -11.02569 -10.91557 -10.70253 -10.65327 -10.14615 -10.05653 -9.81656 -9.38685 -9.06088 -8.96310 -8.69740 -8.38037 -8.05369 -6.70794 -4.40973 1.84113 2.47327 3.15118 3.31040 3.40869 3.58054 3.68174 3.94583 4.21190 4.24335 4.47871 4.60455 4.77935 4.93742 4.94002 5.03772 5.10137 5.21081 5.25031 5.33524 5.40556 5.53723 5.60400 5.60674 5.79265 5.80192 5.83556 5.93086 6.04174 6.18164 6.23520 6.41807 6.57198 6.64267 6.74153 6.98348 7.34123 7.60598 7.67557 7.75231 8.00927 8.12522 8.39620 8.62192 8.81428 9.32121 10.65686 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.004164 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.622696 B = 6723.280334 C = 7582.701833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.036 3.964 3 Si 1.038 2.962 4 H -0.281 1.281 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.619 4.619 8 H 0.070 0.930 9 C 0.217 3.783 10 O -0.576 6.576 11 C -0.110 4.110 12 C 0.112 3.888 13 N -0.574 5.574 14 C 0.512 3.488 15 O -0.538 6.538 16 C 0.518 3.482 17 O -0.473 6.473 18 N -0.597 5.597 19 C 0.096 3.904 20 C -0.135 4.135 21 C -0.125 4.125 22 C 0.138 3.862 23 H 0.083 0.917 24 C 0.065 3.935 25 O -0.537 6.537 26 C 0.065 3.935 27 H 0.274 0.726 28 H 0.364 0.636 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.051 0.949 41 H 0.367 0.633 42 H 0.083 0.917 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.083 -0.641 -3.956 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.172 4.172 3 Si 0.868 3.132 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.656 4.656 8 H 0.088 0.912 9 C 0.176 3.824 10 O -0.385 6.385 11 C -0.147 4.147 12 C -0.010 4.010 13 N -0.306 5.306 14 C 0.295 3.705 15 O -0.417 6.417 16 C 0.300 3.700 17 O -0.344 6.344 18 N -0.334 5.334 19 C -0.026 4.026 20 C -0.173 4.173 21 C -0.163 4.163 22 C 0.035 3.965 23 H 0.101 0.899 24 C -0.015 4.015 25 O -0.340 6.340 26 C -0.056 4.056 27 H 0.085 0.915 28 H 0.213 0.787 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.213 0.787 42 H 0.101 0.899 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.974 0.781 -3.351 23.230 hybrid contribution 0.144 -1.474 -0.770 1.670 sum 23.118 -0.694 -4.121 23.493 Atomic orbital electron populations 1.70813 1.06848 1.31504 1.42384 1.25799 0.96351 1.02298 0.92754 0.84287 0.74846 0.76381 0.77718 1.20732 1.20820 1.19857 1.22228 0.94684 0.97263 1.51461 0.91178 1.20085 0.93389 0.89533 0.79352 1.86378 1.81971 1.40252 1.29858 1.22589 0.92140 0.97750 1.02271 1.22181 0.97856 0.80877 1.00117 1.48492 1.05564 1.14248 1.62304 1.19752 0.84353 0.86506 0.79927 1.90654 1.86753 1.16572 1.47715 1.19853 0.83944 0.86629 0.79579 1.90814 1.86065 1.15164 1.42402 1.48221 1.04492 1.13700 1.66979 1.22664 0.97730 0.82088 1.00128 1.22891 0.94707 0.97109 1.02601 1.22626 0.97263 0.93773 1.02653 1.21643 0.82146 0.92595 1.00145 0.89858 1.22558 0.93354 0.88701 0.96863 1.86960 1.64601 1.26744 1.55731 1.24115 0.79928 0.98887 1.02680 0.91517 0.78719 0.90176 0.90075 0.90889 0.91248 0.91333 0.87917 0.90376 0.89567 0.89618 0.90261 0.93853 0.93142 0.78745 0.89867 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.80 13.70 55.43 0.76 -25.04 16 2 C 0.04 1.00 5.34 -17.82 -0.10 0.91 16 3 Si 1.04 24.44 23.60 -169.99 -4.01 20.43 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.15 5.80 56.52 0.33 -5.82 16 6 H -0.27 -6.23 6.44 56.52 0.36 -5.86 16 7 C -0.62 -16.65 8.71 -34.44 -0.30 -16.95 16 8 H 0.07 2.00 8.03 -52.48 -0.42 1.57 16 9 C 0.22 5.18 0.83 -89.62 -0.07 5.11 16 10 O -0.58 -14.09 13.19 -35.23 -0.46 -14.55 16 11 C -0.11 -2.25 6.13 -24.89 -0.15 -2.40 16 12 C 0.11 2.16 5.49 -3.07 -0.02 2.15 16 13 N -0.57 -12.06 3.33 -171.03 -0.57 -12.63 16 14 C 0.51 10.25 7.88 -11.59 -0.09 10.16 16 15 O -0.54 -11.26 14.03 5.50 0.08 -11.18 16 16 C 0.52 9.16 7.62 -11.58 -0.09 9.07 16 17 O -0.47 -8.92 11.40 -18.62 -0.21 -9.13 16 18 N -0.60 -8.40 3.06 -163.39 -0.50 -8.90 16 19 C 0.10 1.14 6.08 -2.42 -0.01 1.13 16 20 C -0.13 -1.06 7.10 -24.47 -0.17 -1.24 16 21 C -0.13 -0.87 6.47 -24.90 -0.16 -1.04 16 22 C 0.14 1.49 3.30 -66.96 -0.22 1.27 16 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 24 C 0.06 0.64 6.47 37.16 0.24 0.88 16 25 O -0.54 -6.82 10.33 -59.35 -0.61 -7.43 16 26 C 0.07 1.49 4.11 -2.53 -0.01 1.48 16 27 H 0.27 7.94 8.73 -40.82 -0.36 7.59 16 28 H 0.36 8.56 5.71 45.56 0.26 8.82 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 30 H 0.08 1.58 8.03 -51.93 -0.42 1.17 16 31 H 0.07 1.43 7.58 -51.93 -0.39 1.04 16 32 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.45 6.14 -51.93 -0.32 1.13 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.37 3.10 9.12 45.56 0.42 3.51 16 42 H 0.08 1.92 8.02 -51.93 -0.42 1.50 16 43 H 0.07 1.59 4.47 -51.93 -0.23 1.36 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -33.23 334.00 -6.64 -39.86 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -4.98 Total: 13.00 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -1.16 Total: 10.53 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.31 Total: -46.57 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -1.21 Total: -42.29 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.01 Total: 20.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.23 -6.64 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326213265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.011 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds