Wall clock time and date at job start Fri Apr 10 2020 18:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99709 * 2 1 4 4 H 1.48500 * 109.47182 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47315 * 120.00150 * 3 2 1 6 6 H 1.48503 * 109.46912 * 240.00054 * 3 2 1 7 7 C 1.37880 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99735 * 19.23839 * 7 2 1 9 9 C 1.50696 * 120.00132 * 199.23567 * 7 2 1 10 10 O 1.42901 * 110.88496 * 61.18835 * 9 7 2 11 11 C 1.55163 * 111.00459 * 185.06890 * 9 7 2 12 12 C 1.54321 * 102.94023 * 153.57594 * 11 9 7 13 13 N 1.47022 * 107.27551 * 337.80906 * 12 11 9 14 14 C 1.34773 * 125.64919 * 178.98681 * 13 12 11 15 15 O 1.21348 * 119.99787 * 179.97438 * 14 13 12 16 16 C 1.49450 * 120.00123 * 359.97361 * 14 13 12 17 17 O 1.21349 * 119.99631 * 0.02562 * 16 14 13 18 18 N 1.34777 * 119.99963 * 179.97438 * 16 14 13 19 19 C 1.47419 * 125.64881 * 359.70018 * 18 16 14 20 20 C 1.55123 * 104.72225 * 155.81200 * 19 18 16 21 21 C 1.55158 * 101.48793 * 37.29412 * 20 19 18 22 22 C 1.47017 * 125.64581 * 179.97438 * 18 16 14 23 23 H 1.09004 * 109.88572 * 300.44329 * 22 18 16 24 24 C 1.52997 * 109.88597 * 61.60891 * 22 18 16 25 25 O 1.42905 * 109.47249 * 293.54639 * 24 22 18 26 26 C 1.47427 * 108.70066 * 358.93727 * 13 12 11 27 27 H 0.97004 * 119.99777 * 174.91950 * 1 2 3 28 28 H 0.96696 * 114.00087 * 306.16748 * 10 9 7 29 29 H 1.09000 * 110.71578 * 271.94460 * 11 9 7 30 30 H 1.09001 * 110.71534 * 35.21461 * 11 9 7 31 31 H 1.08996 * 109.88047 * 97.23004 * 12 11 9 32 32 H 1.08999 * 109.87926 * 218.23661 * 12 11 9 33 33 H 1.09006 * 110.36339 * 274.73857 * 19 18 16 34 34 H 1.08997 * 110.36989 * 37.06005 * 19 18 16 35 35 H 1.09002 * 111.19504 * 279.18554 * 20 19 18 36 36 H 1.09004 * 110.94109 * 155.28559 * 20 19 18 37 37 H 1.08997 * 110.72245 * 205.96756 * 21 20 19 38 38 H 1.08999 * 110.71973 * 82.69533 * 21 20 19 39 39 H 1.09003 * 109.46882 * 53.54271 * 24 22 18 40 40 H 1.09003 * 109.47589 * 173.54484 * 24 22 18 41 41 H 0.96699 * 114.00183 * 179.97438 * 25 24 22 42 42 H 1.08993 * 110.36839 * 265.29386 * 26 13 12 43 43 H 1.09000 * 110.36319 * 142.96831 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.5099 -2.1034 -0.3073 9 6 3.4485 -1.2302 0.4305 10 8 3.5872 -0.8002 1.7862 11 6 4.0528 -2.6454 0.2313 12 6 5.5571 -2.3557 0.0452 13 7 5.6814 -0.9586 -0.3957 14 6 6.8380 -0.3148 -0.6490 15 8 6.8212 0.8437 -1.0097 16 6 8.1414 -1.0277 -0.4857 17 8 8.1581 -2.1864 -0.1254 18 7 9.2980 -0.3840 -0.7395 19 6 9.4222 1.0146 -1.1887 20 6 10.8431 1.4475 -0.7414 21 6 11.6534 0.1469 -0.9849 22 6 10.6444 -0.9621 -0.6196 23 1 10.8148 -1.2960 0.4039 24 6 10.7932 -2.1393 -1.5855 25 8 9.9258 -3.2004 -1.1806 26 6 4.3312 -0.3790 -0.5161 27 1 -0.4850 -0.8368 -0.0744 28 1 3.1931 0.0641 1.9670 29 1 3.8853 -3.2638 1.1131 30 1 3.6385 -3.1198 -0.6583 31 1 6.0810 -2.4939 0.9909 32 1 5.9725 -3.0234 -0.7096 33 1 9.3286 1.0744 -2.2730 34 1 8.6675 1.6362 -0.7070 35 1 10.8570 1.7249 0.3126 36 1 11.2158 2.2620 -1.3626 37 1 12.5241 0.1067 -0.3305 38 1 11.9516 0.0684 -2.0304 39 1 10.5286 -1.8182 -2.5930 40 1 11.8253 -2.4897 -1.5752 41 1 9.9675 -3.9812 -1.7494 42 1 3.9739 -0.4596 -1.5426 43 1 4.3358 0.6628 -0.1957 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326213265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:21 Heat of formation + Delta-G solvation = -163.693919 kcal Electronic energy + Delta-G solvation = -27724.438902 eV Core-core repulsion = 23769.620486 eV Total energy + Delta-G solvation = -3954.818416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.98829 -40.60544 -39.15399 -38.57502 -37.13750 -36.34309 -34.67505 -32.71389 -32.10105 -31.24420 -30.27596 -27.56918 -26.21199 -25.39810 -24.14016 -22.78555 -21.76722 -21.58209 -20.08480 -19.91151 -18.44069 -18.30856 -18.02523 -17.76214 -17.49721 -17.06002 -16.39160 -15.91690 -15.59446 -15.35639 -15.22579 -15.06349 -14.94714 -14.64039 -14.36910 -14.26376 -14.15983 -13.82955 -13.28541 -13.21347 -12.92968 -12.78212 -12.70529 -12.55200 -12.38480 -12.18990 -12.07665 -11.81247 -11.77262 -11.64055 -11.30291 -11.05008 -10.85198 -10.49671 -10.34594 -9.89889 -9.64043 -8.90410 -6.61935 0.38828 1.14742 1.26603 1.40533 1.54877 2.14512 2.24270 2.33999 2.83073 3.12677 3.25954 3.45376 3.62635 3.76219 3.79867 3.82811 4.10089 4.16582 4.20336 4.23422 4.29638 4.44061 4.51237 4.55232 4.61309 4.68872 4.85398 4.87319 4.91428 4.97942 5.01471 5.06765 5.09951 5.21878 5.27244 5.32466 5.66041 5.87890 6.10369 6.22790 6.39433 6.56403 6.88545 6.94344 7.00400 7.18692 8.45182 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.004164 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.622696 B = 6723.280334 C = 7582.701833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.001 4.001 3 Si 1.070 2.930 4 H -0.281 1.281 5 H -0.256 1.256 6 H -0.263 1.263 7 C -0.622 4.622 8 H 0.043 0.957 9 C 0.209 3.791 10 O -0.580 6.580 11 C -0.106 4.106 12 C 0.125 3.875 13 N -0.583 5.583 14 C 0.506 3.494 15 O -0.550 6.550 16 C 0.515 3.485 17 O -0.491 6.491 18 N -0.592 5.592 19 C 0.087 3.913 20 C -0.124 4.124 21 C -0.111 4.111 22 C 0.126 3.874 23 H 0.071 0.929 24 C 0.063 3.937 25 O -0.570 6.570 26 C 0.071 3.929 27 H 0.263 0.737 28 H 0.366 0.634 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.382 0.618 42 H 0.077 0.923 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.810 -0.033 -4.379 27.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.204 4.204 3 Si 0.894 3.106 4 H -0.207 1.207 5 H -0.182 1.182 6 H -0.188 1.188 7 C -0.659 4.659 8 H 0.062 0.938 9 C 0.169 3.831 10 O -0.389 6.389 11 C -0.144 4.144 12 C 0.003 3.997 13 N -0.316 5.316 14 C 0.290 3.710 15 O -0.430 6.430 16 C 0.297 3.703 17 O -0.364 6.364 18 N -0.327 5.327 19 C -0.035 4.035 20 C -0.162 4.162 21 C -0.149 4.149 22 C 0.024 3.976 23 H 0.089 0.911 24 C -0.016 4.016 25 O -0.376 6.376 26 C -0.051 4.051 27 H 0.073 0.927 28 H 0.215 0.785 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.229 0.771 42 H 0.095 0.905 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.756 1.380 -3.781 27.057 hybrid contribution -0.987 -1.701 -0.665 2.075 sum 25.769 -0.320 -4.446 26.152 Atomic orbital electron populations 1.70919 1.07902 1.30894 1.44976 1.26904 0.96244 1.05343 0.91896 0.83880 0.74380 0.73184 0.79184 1.20741 1.18217 1.18843 1.22371 0.96527 0.96234 1.50806 0.93831 1.20100 0.92019 0.91887 0.79125 1.86370 1.81876 1.40548 1.30087 1.22607 0.92892 0.95981 1.02948 1.22109 0.96636 0.80416 1.00551 1.48527 1.05208 1.14761 1.63073 1.20373 0.85060 0.86498 0.79105 1.90643 1.87179 1.17205 1.47979 1.19403 0.84060 0.86454 0.80425 1.90803 1.86228 1.15572 1.43842 1.48365 1.04739 1.14596 1.65045 1.22818 0.99851 0.80640 1.00174 1.22882 0.91877 0.98397 1.03061 1.22675 0.96591 0.91102 1.04513 1.22058 0.81066 0.94402 1.00072 0.91095 1.22687 0.94701 0.87834 0.96357 1.86907 1.65718 1.28047 1.56914 1.23768 0.81182 0.98284 1.01850 0.92723 0.78471 0.89529 0.89366 0.91020 0.89643 0.90868 0.90549 0.90408 0.86861 0.87040 0.88246 0.93686 0.89854 0.77068 0.90462 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.58 13.70 21.45 0.29 -54.28 16 2 C 0.00 -0.06 5.34 84.66 0.45 0.40 16 3 Si 1.07 49.24 23.60 68.60 1.62 50.86 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.26 -10.70 5.80 99.48 0.58 -10.12 16 6 H -0.26 -11.65 6.44 99.48 0.64 -11.01 16 7 C -0.62 -34.03 8.71 25.60 0.22 -33.80 16 8 H 0.04 2.56 8.03 -2.91 -0.02 2.54 16 9 C 0.21 9.95 0.83 -10.15 -0.01 9.94 16 10 O -0.58 -28.01 13.19 -148.98 -1.96 -29.97 16 11 C -0.11 -4.31 6.13 31.78 0.19 -4.11 16 12 C 0.12 4.70 5.49 86.73 0.48 5.17 16 13 N -0.58 -24.08 3.33 -813.38 -2.71 -26.79 16 14 C 0.51 19.93 7.88 87.27 0.69 20.62 16 15 O -0.55 -22.76 14.03 -3.24 -0.05 -22.81 16 16 C 0.52 17.76 7.62 87.27 0.67 18.43 16 17 O -0.49 -18.06 11.40 19.82 0.23 -17.83 16 18 N -0.59 -15.68 3.06 -789.22 -2.42 -18.10 16 19 C 0.09 1.91 6.08 86.93 0.53 2.43 16 20 C -0.12 -1.51 7.10 32.06 0.23 -1.28 16 21 C -0.11 -1.06 6.47 31.78 0.21 -0.86 16 22 C 0.13 2.39 3.30 45.34 0.15 2.54 16 23 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 24 C 0.06 1.07 6.47 71.98 0.47 1.53 16 25 O -0.57 -13.50 10.33 -125.92 -1.30 -14.80 16 26 C 0.07 3.23 4.11 86.86 0.36 3.59 16 27 H 0.26 15.82 8.73 -92.71 -0.81 15.01 16 28 H 0.37 16.93 5.71 -74.06 -0.42 16.50 16 29 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 30 H 0.09 3.41 8.03 -2.39 -0.02 3.39 16 31 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 32 H 0.09 2.95 7.69 -2.39 -0.02 2.93 16 33 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.08 2.10 6.14 -2.39 -0.01 2.08 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.10 0.62 7.85 -2.39 -0.02 0.60 16 39 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.38 5.86 9.12 -74.06 -0.68 5.19 16 42 H 0.08 3.55 8.02 -2.39 -0.02 3.53 16 43 H 0.06 2.82 4.47 -2.39 -0.01 2.80 16 Total: -1.00 -72.93 334.00 -1.95 -74.88 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.28 Total: 34.26 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 4.62 Total: 24.59 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -4.83 Total: -99.18 kcal Atomic # 8 Polarization: -82.32 SS G_CDS: -3.09 Total: -85.41 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 1.62 Total: 50.86 kcal Total: -72.93 -1.95 -74.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326213265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.813 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds