Wall clock time and date at job start Fri Apr 10 2020 18:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.70114 * 2 1 4 4 S 1.83955 * 110.95026 * 236.56718 * 2 1 3 5 5 C 1.83951 * 94.80733 * 207.16295 * 4 2 1 6 6 C 1.53979 * 102.57169 * 34.41473 * 5 4 2 7 7 C 1.52327 * 112.74190 * 335.59129 * 6 5 4 8 8 H 1.09001 * 108.87296 * 120.62203 * 7 6 5 9 9 N 1.46504 * 108.86837 * 239.12284 * 7 6 5 10 10 C 1.34773 * 120.00143 * 275.76443 * 9 7 6 11 11 O 1.21348 * 119.99989 * 0.02562 * 10 9 7 12 12 C 1.49449 * 119.99985 * 179.97438 * 10 9 7 13 13 O 1.21348 * 120.00025 * 0.02562 * 12 10 9 14 14 N 1.34773 * 119.99985 * 179.97438 * 12 10 9 15 15 C 1.46504 * 120.00143 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47187 * 174.91204 * 15 14 12 17 17 C 1.50702 * 115.55130 * 304.53633 * 16 15 14 18 18 H 1.07995 * 120.00096 * 95.19698 * 17 16 15 19 19 C 1.37878 * 119.99681 * 275.20579 * 17 16 15 20 20 N 1.31515 * 120.00196 * 5.98541 * 19 17 16 21 21 Si 1.86796 * 119.99771 * 185.98518 * 19 17 16 22 22 H 1.48499 * 109.47313 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47241 * 239.99551 * 21 19 17 24 24 H 1.48507 * 109.47118 * 119.99519 * 21 19 17 25 25 C 1.53000 * 117.49859 * 90.20471 * 16 15 14 26 26 C 1.53005 * 117.49813 * 158.86496 * 16 15 14 27 27 H 1.08998 * 109.46877 * 296.68962 * 1 2 3 28 28 H 1.09007 * 109.46874 * 56.68075 * 1 2 3 29 29 H 1.08990 * 109.47422 * 176.68322 * 1 2 3 30 30 H 1.09007 * 110.79050 * 152.76718 * 5 4 2 31 31 H 1.08998 * 110.79060 * 276.03010 * 5 4 2 32 32 H 1.08993 * 108.83596 * 214.69158 * 6 5 4 33 33 H 1.09010 * 108.74753 * 96.42173 * 6 5 4 34 34 H 0.97004 * 119.99838 * 95.76970 * 9 7 6 35 35 H 0.97004 * 120.00019 * 0.02562 * 14 12 10 36 36 H 1.08994 * 109.46883 * 54.90859 * 15 14 12 37 37 H 1.09006 * 109.46595 * 294.90878 * 15 14 12 38 38 H 0.96998 * 119.99932 * 5.34392 * 20 19 17 39 39 H 1.09003 * 117.49952 * 215.00022 * 25 16 15 40 40 H 1.09000 * 117.50170 * 0.02775 * 25 16 15 41 41 H 1.08996 * 117.49904 * 359.97311 * 26 16 15 42 42 H 1.09000 * 117.49313 * 144.96976 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0196 0.0000 4 16 2.1878 -0.9465 -1.4337 5 6 3.7660 -1.4029 -0.6061 6 6 3.3360 -1.5788 0.8619 7 6 2.0775 -0.7922 1.2052 8 1 1.3104 -1.4864 1.5485 9 7 2.3853 0.1453 2.2880 10 6 2.3463 -0.2692 3.5698 11 8 2.0566 -1.4192 3.8270 12 6 2.6609 0.6870 4.6744 13 8 2.9511 1.8369 4.4171 14 7 2.6214 0.2726 5.9562 15 6 2.9293 1.2101 7.0390 16 6 2.6900 0.5282 8.3876 17 6 1.3125 -0.0489 8.5888 18 1 1.1282 -1.0922 8.3794 19 6 0.2874 0.7553 9.0400 20 7 0.4800 2.0484 9.1824 21 14 -1.3750 0.0080 9.4490 22 1 -1.3328 -1.4564 9.2059 23 1 -2.4189 0.6230 8.5904 24 1 -1.6947 0.2631 10.8766 25 6 3.8670 -0.2157 9.0217 26 6 3.3955 1.1159 9.6115 27 1 -0.3633 0.4616 0.9182 28 1 -0.3633 0.5645 -0.8588 29 1 -0.3634 -1.0258 -0.0595 30 1 4.1588 -2.3361 -1.0100 31 1 4.4992 -0.6023 -0.7030 32 1 4.1474 -1.2454 1.5086 33 1 3.1522 -2.6369 1.0488 34 1 2.6172 1.0645 2.0824 35 1 2.3891 -0.6465 6.1618 36 1 2.2857 2.0858 6.9554 37 1 3.9726 1.5178 6.9675 38 1 1.3165 2.4484 8.8974 39 1 3.6450 -1.1224 9.5845 40 1 4.8120 -0.2189 8.4785 41 1 4.0304 1.9881 9.4559 42 1 2.8629 1.0855 10.5620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326437339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:25 Heat of formation + Delta-G solvation = -56.801900 kcal Electronic energy + Delta-G solvation = -23795.717761 eV Core-core repulsion = 20288.287401 eV Total energy + Delta-G solvation = -3507.430359 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56104 -38.69907 -37.11573 -36.99990 -33.80567 -32.76809 -32.35592 -31.98915 -27.58070 -26.43125 -24.98364 -24.00970 -23.38841 -21.42211 -20.63676 -20.11228 -19.79673 -18.25330 -17.35484 -16.66482 -16.54138 -16.03881 -15.44462 -15.12823 -14.95962 -14.52808 -14.30982 -13.92147 -13.80466 -13.69159 -13.50271 -13.19502 -12.89485 -12.56416 -12.48840 -12.30761 -11.92046 -11.80035 -11.56941 -11.42119 -11.17921 -11.06383 -10.83151 -10.54525 -10.31582 -10.18097 -9.78046 -9.46002 -9.34707 -8.86503 -8.61730 -8.49050 -8.35381 -8.10975 -6.44050 -4.21968 1.37872 1.62657 1.84918 2.57895 3.39928 3.41689 3.46502 3.55837 3.84341 3.90949 4.39821 4.42600 4.43771 4.60262 4.66254 4.77374 4.88352 5.05395 5.15875 5.22763 5.29002 5.34305 5.45350 5.58602 5.66040 5.72002 5.79165 6.02489 6.10607 6.14426 6.20128 6.42950 6.50165 6.77114 6.80841 7.00139 7.09515 7.17958 7.69471 8.00470 8.09678 8.30562 8.40194 8.75834 9.53937 10.93736 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.003128 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.462242 B = 8948.657056 C = 9655.401303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.044 4.044 3 H 0.104 0.896 4 S -0.283 6.283 5 C -0.065 4.065 6 C -0.140 4.140 7 C 0.143 3.857 8 H 0.108 0.892 9 N -0.704 5.704 10 C 0.512 3.488 11 O -0.514 6.514 12 C 0.496 3.504 13 O -0.540 6.540 14 N -0.660 5.660 15 C 0.154 3.846 16 C 0.001 3.999 17 C -0.577 4.577 18 H 0.056 0.944 19 C 0.031 3.969 20 N -0.899 5.899 21 Si 1.069 2.931 22 H -0.288 1.288 23 H -0.288 1.288 24 H -0.286 1.286 25 C -0.193 4.193 26 C -0.168 4.168 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.412 0.588 35 H 0.415 0.585 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.275 0.725 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 -4.739 -17.503 18.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 H 0.122 0.878 4 S -0.056 6.056 5 C -0.214 4.214 6 C -0.180 4.180 7 C 0.037 3.963 8 H 0.126 0.874 9 N -0.360 5.360 10 C 0.293 3.707 11 O -0.388 6.388 12 C 0.275 3.725 13 O -0.419 6.419 14 N -0.309 5.309 15 C 0.031 3.969 16 C 0.000 4.000 17 C -0.614 4.614 18 H 0.074 0.926 19 C -0.176 4.176 20 N -0.533 5.533 21 Si 0.897 3.103 22 H -0.214 1.214 23 H -0.214 1.214 24 H -0.212 1.212 25 C -0.231 4.231 26 C -0.206 4.206 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.249 0.751 35 H 0.252 0.748 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.083 -4.653 -17.971 18.818 hybrid contribution 2.078 -0.036 0.507 2.139 sum 5.161 -4.690 -17.465 18.805 Atomic orbital electron populations 1.21723 0.90781 1.03694 1.03225 1.24155 1.00233 1.00971 0.91906 0.87778 1.88111 1.22438 1.69520 1.25580 1.24089 0.96140 1.05270 0.95883 1.22397 0.97802 1.02590 0.95196 1.21827 0.97344 0.91148 0.85992 0.87398 1.46013 1.69976 1.15248 1.04728 1.20492 0.77830 0.88291 0.84118 1.90764 1.45594 1.18776 1.83668 1.19886 0.80405 0.87759 0.84480 1.90719 1.48857 1.18572 1.83779 1.45739 1.64696 1.16334 1.04165 1.21220 0.97907 0.91843 0.85911 1.19319 0.93362 0.98827 0.88476 1.21258 0.92173 0.97374 1.50606 0.92590 1.25772 1.03102 0.95078 0.93610 1.70684 1.28590 1.10950 1.43042 0.83547 0.74988 0.74853 0.76889 1.21370 1.21440 1.21214 1.22943 0.98094 0.96056 1.05962 1.22740 1.03512 0.94791 0.99555 0.90583 0.91303 0.90994 0.87439 0.89024 0.89772 0.89415 0.75082 0.74778 0.91060 0.93644 0.91372 0.89853 0.91329 0.91268 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.21 37.16 0.34 -0.77 16 2 C -0.04 -0.37 3.56 -26.07 -0.09 -0.47 16 3 H 0.10 0.81 7.73 -51.93 -0.40 0.41 16 4 S -0.28 -2.61 22.74 -107.50 -2.45 -5.05 16 5 C -0.07 -0.49 7.45 37.67 0.28 -0.20 16 6 C -0.14 -1.23 6.04 -26.56 -0.16 -1.39 16 7 C 0.14 1.42 2.57 -67.61 -0.17 1.25 16 8 H 0.11 1.23 7.16 -51.93 -0.37 0.85 16 9 N -0.70 -8.20 4.81 -53.93 -0.26 -8.46 16 10 C 0.51 7.92 7.83 -11.59 -0.09 7.83 16 11 O -0.51 -8.93 16.11 5.50 0.09 -8.84 16 12 C 0.50 9.03 7.89 -11.59 -0.09 8.94 16 13 O -0.54 -10.64 16.47 5.50 0.09 -10.55 16 14 N -0.66 -12.98 5.35 -60.73 -0.32 -13.31 16 15 C 0.15 3.30 5.49 -4.04 -0.02 3.28 16 16 C 0.00 0.02 1.03 -155.66 -0.16 -0.14 16 17 C -0.58 -14.85 8.26 -34.44 -0.28 -15.13 16 18 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 19 C 0.03 0.83 5.39 -17.82 -0.10 0.74 16 20 N -0.90 -25.43 13.46 55.43 0.75 -24.68 16 21 Si 1.07 24.27 29.91 -169.99 -5.08 19.19 16 22 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.19 -3.90 9.93 -26.69 -0.27 -4.16 16 26 C -0.17 -3.63 8.90 -26.69 -0.24 -3.87 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.79 7.79 -51.93 -0.40 0.38 16 33 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.41 4.36 7.80 -40.82 -0.32 4.04 16 35 H 0.42 8.20 7.63 -40.82 -0.31 7.88 16 36 H 0.07 1.71 7.51 -51.93 -0.39 1.32 16 37 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.28 7.71 6.13 -40.82 -0.25 7.45 16 39 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -29.45 362.80 -9.07 -38.52 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.30 Total: 11.83 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.05 Total: -4.10 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.16 Total: -46.45 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.18 Total: -19.39 kcal Atomic # 14 Polarization: 24.27 SS G_CDS: -5.08 Total: 19.19 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.45 Total: -5.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.45 -9.07 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326437339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.283 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds