Wall clock time and date at job start Fri Apr 10 2020 18:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 110.70114 * 2 1 4 4 S 1.83955 * 110.95026 * 236.56718 * 2 1 3 5 5 C 1.83951 * 94.80733 * 207.16295 * 4 2 1 6 6 C 1.53979 * 102.57169 * 34.41473 * 5 4 2 7 7 C 1.52327 * 112.74190 * 335.59129 * 6 5 4 8 8 H 1.09001 * 108.87296 * 120.62203 * 7 6 5 9 9 N 1.46504 * 108.86837 * 239.12284 * 7 6 5 10 10 C 1.34773 * 120.00143 * 275.76443 * 9 7 6 11 11 O 1.21348 * 119.99989 * 0.02562 * 10 9 7 12 12 C 1.49449 * 119.99985 * 179.97438 * 10 9 7 13 13 O 1.21348 * 120.00025 * 0.02562 * 12 10 9 14 14 N 1.34773 * 119.99985 * 179.97438 * 12 10 9 15 15 C 1.46504 * 120.00143 * 180.02562 * 14 12 10 16 16 C 1.52999 * 109.47187 * 174.91204 * 15 14 12 17 17 C 1.50702 * 115.55130 * 304.53633 * 16 15 14 18 18 H 1.07995 * 120.00096 * 95.19698 * 17 16 15 19 19 C 1.37878 * 119.99681 * 275.20579 * 17 16 15 20 20 N 1.31515 * 120.00196 * 5.98541 * 19 17 16 21 21 Si 1.86796 * 119.99771 * 185.98518 * 19 17 16 22 22 H 1.48499 * 109.47313 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47241 * 239.99551 * 21 19 17 24 24 H 1.48507 * 109.47118 * 119.99519 * 21 19 17 25 25 C 1.53000 * 117.49859 * 90.20471 * 16 15 14 26 26 C 1.53005 * 117.49813 * 158.86496 * 16 15 14 27 27 H 1.08998 * 109.46877 * 296.68962 * 1 2 3 28 28 H 1.09007 * 109.46874 * 56.68075 * 1 2 3 29 29 H 1.08990 * 109.47422 * 176.68322 * 1 2 3 30 30 H 1.09007 * 110.79050 * 152.76718 * 5 4 2 31 31 H 1.08998 * 110.79060 * 276.03010 * 5 4 2 32 32 H 1.08993 * 108.83596 * 214.69158 * 6 5 4 33 33 H 1.09010 * 108.74753 * 96.42173 * 6 5 4 34 34 H 0.97004 * 119.99838 * 95.76970 * 9 7 6 35 35 H 0.97004 * 120.00019 * 0.02562 * 14 12 10 36 36 H 1.08994 * 109.46883 * 54.90859 * 15 14 12 37 37 H 1.09006 * 109.46595 * 294.90878 * 15 14 12 38 38 H 0.96998 * 119.99932 * 5.34392 * 20 19 17 39 39 H 1.09003 * 117.49952 * 215.00022 * 25 16 15 40 40 H 1.09000 * 117.50170 * 0.02775 * 25 16 15 41 41 H 1.08996 * 117.49904 * 359.97311 * 26 16 15 42 42 H 1.09000 * 117.49313 * 144.96976 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9153 1.0196 0.0000 4 16 2.1878 -0.9465 -1.4337 5 6 3.7660 -1.4029 -0.6061 6 6 3.3360 -1.5788 0.8619 7 6 2.0775 -0.7922 1.2052 8 1 1.3104 -1.4864 1.5485 9 7 2.3853 0.1453 2.2880 10 6 2.3463 -0.2692 3.5698 11 8 2.0566 -1.4192 3.8270 12 6 2.6609 0.6870 4.6744 13 8 2.9511 1.8369 4.4171 14 7 2.6214 0.2726 5.9562 15 6 2.9293 1.2101 7.0390 16 6 2.6900 0.5282 8.3876 17 6 1.3125 -0.0489 8.5888 18 1 1.1282 -1.0922 8.3794 19 6 0.2874 0.7553 9.0400 20 7 0.4800 2.0484 9.1824 21 14 -1.3750 0.0080 9.4490 22 1 -1.3328 -1.4564 9.2059 23 1 -2.4189 0.6230 8.5904 24 1 -1.6947 0.2631 10.8766 25 6 3.8670 -0.2157 9.0217 26 6 3.3955 1.1159 9.6115 27 1 -0.3633 0.4616 0.9182 28 1 -0.3633 0.5645 -0.8588 29 1 -0.3634 -1.0258 -0.0595 30 1 4.1588 -2.3361 -1.0100 31 1 4.4992 -0.6023 -0.7030 32 1 4.1474 -1.2454 1.5086 33 1 3.1522 -2.6369 1.0488 34 1 2.6172 1.0645 2.0824 35 1 2.3891 -0.6465 6.1618 36 1 2.2857 2.0858 6.9554 37 1 3.9726 1.5178 6.9675 38 1 1.3165 2.4484 8.8974 39 1 3.6450 -1.1224 9.5845 40 1 4.8120 -0.2189 8.4785 41 1 4.0304 1.9881 9.4559 42 1 2.8629 1.0855 10.5620 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326437339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:24 Heat of formation + Delta-G solvation = -75.337648 kcal Electronic energy + Delta-G solvation = -23796.521531 eV Core-core repulsion = 20288.287401 eV Total energy + Delta-G solvation = -3508.234130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.85156 -40.06851 -38.75256 -38.09791 -35.30886 -33.98183 -33.83112 -33.03568 -28.99188 -27.52970 -26.92931 -24.78764 -24.59462 -23.09354 -21.65141 -21.48091 -21.38317 -19.70846 -18.47410 -18.31116 -17.50631 -17.27357 -16.76003 -16.59084 -15.90724 -15.69640 -15.61270 -15.31114 -15.24379 -14.85048 -14.61931 -14.41668 -14.34443 -14.19254 -13.60227 -13.26926 -13.11528 -12.91405 -12.86261 -12.66699 -12.59128 -12.22029 -12.19658 -11.94667 -11.93396 -11.50605 -11.05069 -10.78883 -10.62826 -10.54064 -10.47927 -10.31388 -10.07806 -8.82165 -8.52828 -6.29948 0.28680 0.66162 1.10956 1.41638 1.55147 1.61064 1.77416 2.09328 2.55339 2.61953 3.11373 3.20912 3.24627 3.46100 3.66953 3.71912 3.92726 4.00976 4.02564 4.19527 4.31249 4.42761 4.44781 4.49110 4.66764 4.70171 4.71893 4.75790 4.81406 4.84891 4.95264 5.05794 5.09786 5.17510 5.20784 5.33190 5.46673 5.87340 6.12662 6.24961 6.35441 6.67737 6.69544 6.91558 7.51379 8.85630 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.003128 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.462242 B = 8948.657056 C = 9655.401303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 H 0.116 0.884 4 S -0.309 6.309 5 C -0.053 4.053 6 C -0.137 4.137 7 C 0.143 3.857 8 H 0.095 0.905 9 N -0.683 5.683 10 C 0.520 3.480 11 O -0.535 6.535 12 C 0.495 3.505 13 O -0.556 6.556 14 N -0.666 5.666 15 C 0.168 3.832 16 C -0.025 4.025 17 C -0.577 4.577 18 H 0.048 0.952 19 C -0.015 4.015 20 N -0.928 5.928 21 Si 1.107 2.893 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.282 1.282 25 C -0.167 4.167 26 C -0.170 4.170 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.420 0.580 35 H 0.415 0.585 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.266 0.734 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.871 -5.521 -18.814 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 H 0.134 0.866 4 S -0.082 6.082 5 C -0.201 4.201 6 C -0.177 4.177 7 C 0.038 3.962 8 H 0.113 0.887 9 N -0.338 5.338 10 C 0.300 3.700 11 O -0.411 6.411 12 C 0.275 3.725 13 O -0.435 6.435 14 N -0.315 5.315 15 C 0.044 3.956 16 C -0.026 4.026 17 C -0.615 4.615 18 H 0.066 0.934 19 C -0.216 4.216 20 N -0.563 5.563 21 Si 0.931 3.069 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.208 1.208 25 C -0.204 4.204 26 C -0.208 4.208 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.258 0.742 35 H 0.252 0.748 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.932 -5.436 -19.325 20.456 hybrid contribution 1.868 0.195 0.852 2.062 sum 5.800 -5.241 -18.473 20.059 Atomic orbital electron populations 1.21724 0.90550 1.03665 1.03412 1.24125 1.00387 1.01186 0.90771 0.86620 1.88252 1.24006 1.69852 1.26140 1.24140 0.95179 1.06538 0.94270 1.22334 0.96936 1.02220 0.96228 1.21991 0.97798 0.90802 0.85657 0.88687 1.45953 1.68130 1.15922 1.03780 1.19937 0.78227 0.87336 0.84524 1.90764 1.47104 1.19245 1.83976 1.20352 0.79430 0.88005 0.84666 1.90706 1.49333 1.19434 1.84059 1.45700 1.65334 1.15972 1.04508 1.20901 0.97937 0.90877 0.85840 1.19340 0.93159 1.00635 0.89470 1.21498 0.93723 0.96895 1.49344 0.93397 1.26876 1.06061 0.95004 0.93650 1.70779 1.28488 1.11860 1.45205 0.83038 0.71973 0.75039 0.76822 1.19816 1.21424 1.20776 1.22961 0.97934 0.95086 1.04389 1.22676 1.03621 0.96542 0.98005 0.90984 0.90402 0.91277 0.85914 0.87714 0.89977 0.89504 0.74192 0.74822 0.94294 0.92103 0.92328 0.89845 0.88525 0.89586 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.21 71.98 0.66 -1.37 16 2 C -0.04 -0.55 3.56 31.02 0.11 -0.44 16 3 H 0.12 1.54 7.73 -2.39 -0.02 1.52 16 4 S -0.31 -5.13 22.74 -56.49 -1.28 -6.41 16 5 C -0.05 -0.66 7.45 72.31 0.54 -0.12 16 6 C -0.14 -2.16 6.04 30.70 0.19 -1.97 16 7 C 0.14 2.63 2.57 45.20 0.12 2.75 16 8 H 0.10 2.07 7.16 -2.39 -0.02 2.05 16 9 N -0.68 -14.94 4.81 -442.88 -2.13 -17.07 16 10 C 0.52 15.60 7.83 87.27 0.68 16.28 16 11 O -0.53 -18.18 16.11 -3.24 -0.05 -18.23 16 12 C 0.50 17.75 7.89 87.27 0.69 18.44 16 13 O -0.56 -21.54 16.47 -3.24 -0.05 -21.59 16 14 N -0.67 -25.97 5.35 -464.41 -2.48 -28.45 16 15 C 0.17 7.17 5.49 86.38 0.47 7.65 16 16 C -0.03 -1.14 1.03 -52.93 -0.05 -1.19 16 17 C -0.58 -29.78 8.26 25.60 0.21 -29.57 16 18 H 0.05 2.49 7.82 -2.91 -0.02 2.47 16 19 C -0.01 -0.80 5.39 84.65 0.46 -0.34 16 20 N -0.93 -53.38 13.46 21.45 0.29 -53.09 16 21 Si 1.11 48.99 29.91 68.60 2.05 51.04 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 C -0.17 -6.42 9.93 30.62 0.30 -6.11 16 26 C -0.17 -7.27 8.90 30.62 0.27 -7.00 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.36 7.79 -2.39 -0.02 1.34 16 33 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.42 8.14 7.80 -92.70 -0.72 7.41 16 35 H 0.42 16.26 7.63 -92.70 -0.71 15.55 16 36 H 0.04 1.90 7.51 -2.39 -0.02 1.88 16 37 H 0.06 2.38 8.10 -2.38 -0.02 2.36 16 38 H 0.27 15.30 6.13 -92.71 -0.57 14.74 16 39 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -62.77 362.80 0.80 -61.97 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -0.19 Total: 34.83 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 4.65 Total: -3.00 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -4.33 Total: -98.61 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.11 Total: -39.82 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.05 Total: 51.04 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -1.28 Total: -6.41 kcal Total: -62.77 0.80 -61.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326437339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.366 kcal (2) G-P(sol) polarization free energy of solvation -62.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds