Wall clock time and date at job start Fri Apr 10 2020 18:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99581 * 2 1 4 4 H 1.48497 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47328 * 299.99591 * 3 2 1 6 6 H 1.48504 * 109.47307 * 59.99757 * 3 2 1 7 7 C 1.37870 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00225 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.77852 * 303.24013 * 9 7 2 11 11 C 1.55148 * 110.72058 * 179.97438 * 9 7 2 12 12 C 1.54906 * 101.58258 * 206.13523 * 11 9 7 13 13 N 1.47428 * 104.82981 * 37.01234 * 12 11 9 14 14 C 1.34778 * 125.64548 * 155.83969 * 13 12 11 15 15 O 1.21351 * 119.99859 * 180.02562 * 14 13 12 16 16 C 1.49449 * 120.00162 * 0.02562 * 14 13 12 17 17 O 1.21349 * 120.00281 * 6.13336 * 16 14 13 18 18 N 1.34781 * 119.99929 * 186.13273 * 16 14 13 19 19 C 1.47506 * 118.75328 * 185.86062 * 18 16 14 20 20 C 1.53953 * 110.81894 * 138.25248 * 19 18 16 21 21 C 1.51537 * 109.72565 * 320.30449 * 20 19 18 22 22 O 1.42154 * 108.76817 * 91.29370 * 21 20 19 23 23 C 1.38011 * 119.43755 * 272.78270 * 22 21 20 24 24 C 1.45123 * 118.75466 * 6.12334 * 18 16 14 25 25 C 1.47014 * 108.70365 * 335.87116 * 13 12 11 26 26 H 0.96996 * 120.00464 * 0.02562 * 1 2 3 27 27 H 0.96704 * 114.00097 * 56.75388 * 10 9 7 28 28 H 1.09006 * 111.00383 * 88.06509 * 11 9 7 29 29 H 1.09000 * 111.01101 * 324.21178 * 11 9 7 30 30 H 1.09000 * 110.36659 * 155.85066 * 12 11 9 31 31 H 1.09006 * 110.36758 * 278.06457 * 12 11 9 32 32 H 1.08995 * 109.16477 * 258.76202 * 19 18 16 33 33 H 1.08995 * 109.17066 * 17.97312 * 19 18 16 34 34 H 1.08993 * 109.45884 * 200.17123 * 20 19 18 35 35 H 1.09000 * 109.28006 * 80.31832 * 20 19 18 36 36 H 1.09000 * 109.58787 * 331.50279 * 21 20 19 37 37 H 1.09000 * 109.70200 * 211.15108 * 21 20 19 38 38 H 1.09006 * 109.47007 * 303.42098 * 23 22 21 39 39 H 1.08999 * 109.46736 * 183.42667 * 23 22 21 40 40 H 1.08994 * 109.46359 * 29.31447 * 24 18 16 41 41 H 1.08998 * 109.45543 * 149.27844 * 24 18 16 42 42 H 1.08993 * 109.88334 * 120.47730 * 25 13 12 43 43 H 1.09004 * 109.88306 * 241.48859 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.3630 -2.5718 1.1176 11 6 2.2335 -3.7000 0.0005 12 6 1.3759 -4.8034 -0.6679 13 7 0.5949 -4.0998 -1.7016 14 6 0.0738 -4.6616 -2.8104 15 8 -0.5542 -3.9831 -3.5965 16 6 0.2692 -6.1200 -3.0717 17 8 0.7993 -6.8207 -2.2348 18 7 -0.1434 -6.6570 -4.2370 19 6 -0.0571 -8.1188 -4.4147 20 6 -1.3184 -8.6608 -5.1114 21 6 -2.5439 -7.9461 -4.5788 22 8 -2.8032 -6.8121 -5.3959 23 6 -2.1815 -5.6136 -5.1099 24 6 -0.6504 -5.7746 -5.2716 25 6 0.4793 -2.6840 -1.3230 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2717 -1.8437 1.1635 28 1 2.5075 -3.9807 1.0176 29 1 3.1198 -3.4799 -0.5945 30 1 2.0169 -5.5576 -1.1245 31 1 0.7120 -5.2634 0.0640 32 1 0.8190 -8.3547 -5.0186 33 1 0.0442 -8.5926 -3.4383 34 1 -1.4089 -9.7297 -4.9183 35 1 -1.2374 -8.4914 -6.1851 36 1 -2.3624 -7.6240 -3.5535 37 1 -3.4014 -8.6185 -4.6041 38 1 -2.4099 -5.3214 -4.0849 39 1 -2.5404 -4.8456 -5.7952 40 1 -0.1714 -4.7995 -5.1841 41 1 -0.4314 -6.2000 -6.2510 42 1 0.9176 -2.0559 -2.0985 43 1 -0.5695 -2.4221 -1.1829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326529716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:35 Heat of formation + Delta-G solvation = -135.853462 kcal Electronic energy + Delta-G solvation = -27725.382677 eV Core-core repulsion = 23771.771514 eV Total energy + Delta-G solvation = -3953.611163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.98963 -39.27270 -38.21844 -37.37373 -35.53700 -34.28478 -33.11043 -32.22363 -30.22139 -28.66520 -28.04891 -27.08488 -25.75889 -24.11503 -22.77493 -22.02960 -20.71088 -19.62947 -19.00631 -17.31909 -17.13256 -17.08771 -16.56224 -16.28711 -15.88705 -15.58963 -15.37010 -14.93252 -14.44804 -14.35157 -13.85271 -13.60263 -13.20837 -13.07144 -13.02523 -12.89251 -12.54074 -12.35276 -12.07803 -11.83001 -11.69213 -11.57906 -11.19422 -11.13032 -10.93335 -10.72607 -10.69029 -10.58808 -10.50964 -10.18397 -9.78221 -9.38847 -9.00579 -8.77304 -8.70935 -8.37687 -8.05413 -6.35458 -4.44092 1.68385 2.47074 3.16508 3.25695 3.29246 3.44761 3.64937 3.69865 4.21957 4.43624 4.56207 4.68707 4.90665 4.93293 5.07375 5.13269 5.22398 5.36814 5.45223 5.50847 5.55633 5.63336 5.79149 5.79787 5.83478 5.95562 5.96011 6.01647 6.20909 6.36656 6.46093 6.71540 6.75212 6.78177 7.01190 7.15136 7.27154 7.51813 7.67552 7.72706 7.94281 7.97140 8.35805 8.60074 9.25363 9.38382 10.72381 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.003653 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.357264 B = 7662.325252 C = 8189.528340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.069 0.931 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.121 4.121 12 C 0.101 3.899 13 N -0.572 5.572 14 C 0.504 3.496 15 O -0.531 6.531 16 C 0.504 3.496 17 O -0.517 6.517 18 N -0.589 5.589 19 C 0.108 3.892 20 C -0.164 4.164 21 C 0.072 3.928 22 O -0.393 6.393 23 C 0.068 3.932 24 C 0.060 3.940 25 C 0.099 3.901 26 H 0.271 0.729 27 H 0.386 0.614 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -13.735 -9.304 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.159 4.159 12 C -0.021 4.021 13 N -0.304 5.304 14 C 0.287 3.713 15 O -0.411 6.411 16 C 0.287 3.713 17 O -0.392 6.392 18 N -0.324 5.324 19 C -0.014 4.014 20 C -0.202 4.202 21 C -0.004 4.004 22 O -0.312 6.312 23 C -0.010 4.010 24 C -0.063 4.063 25 C -0.022 4.022 26 H 0.081 0.919 27 H 0.238 0.762 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.063 -14.217 -9.344 17.138 hybrid contribution 0.272 1.443 0.006 1.468 sum -1.790 -12.774 -9.338 15.925 Atomic orbital electron populations 1.69576 1.06045 1.27986 1.50009 1.25084 0.95062 0.99861 0.93266 0.86320 0.80073 0.82560 0.77810 1.19543 1.20725 1.20682 1.21577 0.93837 0.89982 1.52077 0.91296 1.19492 0.85869 0.92349 0.81536 1.86097 1.51219 1.53333 1.48771 1.22836 0.97685 0.94853 1.00559 1.22592 0.94313 0.95371 0.89812 1.48719 1.49289 1.12658 1.19716 1.19541 0.81854 0.87564 0.82354 1.90639 1.41546 1.63759 1.45158 1.20578 0.79084 0.89373 0.82231 1.90697 1.40832 1.62584 1.45117 1.47795 1.62247 1.07385 1.14947 1.21976 0.97864 0.79021 1.02503 1.22526 0.94912 1.00870 1.01876 1.22169 0.96965 0.87204 0.94078 1.86255 1.69560 1.18687 1.56684 1.22503 0.91159 0.85382 1.01940 1.23016 0.96756 0.96447 0.90052 1.23282 1.02209 0.76662 1.00089 0.91885 0.76193 0.90245 0.90520 0.89981 0.91235 0.91245 0.88980 0.89455 0.90135 0.93084 0.89222 0.93080 0.87556 0.86087 0.90619 0.90944 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.22 10.98 55.43 0.61 -22.62 16 2 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 3 Si 0.91 19.99 29.54 -169.99 -5.02 14.97 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -13.72 8.11 -34.44 -0.28 -14.00 16 8 H 0.07 1.74 7.76 -52.49 -0.41 1.33 16 9 C 0.25 5.92 0.86 -89.94 -0.08 5.85 16 10 O -0.58 -14.64 13.09 -35.23 -0.46 -15.10 16 11 C -0.12 -2.46 6.22 -24.59 -0.15 -2.61 16 12 C 0.10 1.94 5.96 -2.53 -0.02 1.93 16 13 N -0.57 -11.81 3.33 -171.03 -0.57 -12.38 16 14 C 0.50 9.68 7.69 -11.59 -0.09 9.59 16 15 O -0.53 -10.51 12.06 5.50 0.07 -10.44 16 16 C 0.50 8.44 7.63 -11.58 -0.09 8.35 16 17 O -0.52 -9.24 13.23 5.50 0.07 -9.16 16 18 N -0.59 -7.99 2.18 -172.75 -0.38 -8.36 16 19 C 0.11 1.14 6.16 -2.99 -0.02 1.12 16 20 C -0.16 -1.39 5.79 -26.97 -0.16 -1.55 16 21 C 0.07 0.75 6.37 36.42 0.23 0.98 16 22 O -0.39 -4.90 9.86 -26.52 -0.26 -5.16 16 23 C 0.07 0.89 6.12 38.11 0.23 1.12 16 24 C 0.06 0.76 5.10 -3.83 -0.02 0.75 16 25 C 0.10 2.30 5.53 -3.07 -0.02 2.28 16 26 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 27 H 0.39 9.91 6.98 45.56 0.32 10.23 16 28 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.08 1.48 8.02 -51.93 -0.42 1.06 16 30 H 0.08 1.48 6.33 -51.93 -0.33 1.15 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.04 7.07 -51.93 -0.37 0.67 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.68 8.01 -51.93 -0.42 0.26 16 36 H 0.05 0.62 7.41 -51.93 -0.38 0.23 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.79 7.20 -51.93 -0.37 0.41 16 39 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.12 1.76 5.39 -51.93 -0.28 1.48 16 41 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 42 H 0.07 1.79 7.81 -51.93 -0.41 1.39 16 43 H 0.07 1.77 8.07 -51.93 -0.42 1.35 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -27.97 337.75 -6.97 -34.94 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.57 Total: 12.73 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: -0.54 Total: 15.50 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.34 Total: -43.36 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.58 Total: -39.87 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.97 -6.97 -34.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326529716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.917 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds