Wall clock time and date at job start Fri Apr 10 2020 18:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99581 * 2 1 4 4 H 1.48497 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47328 * 299.99591 * 3 2 1 6 6 H 1.48504 * 109.47307 * 59.99757 * 3 2 1 7 7 C 1.37870 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00225 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.77852 * 303.24013 * 9 7 2 11 11 C 1.55148 * 110.72058 * 179.97438 * 9 7 2 12 12 C 1.54906 * 101.58258 * 206.13523 * 11 9 7 13 13 N 1.47428 * 104.82981 * 37.01234 * 12 11 9 14 14 C 1.34778 * 125.64548 * 155.83969 * 13 12 11 15 15 O 1.21351 * 119.99859 * 180.02562 * 14 13 12 16 16 C 1.49449 * 120.00162 * 0.02562 * 14 13 12 17 17 O 1.21349 * 120.00281 * 6.13336 * 16 14 13 18 18 N 1.34781 * 119.99929 * 186.13273 * 16 14 13 19 19 C 1.47506 * 118.75328 * 185.86062 * 18 16 14 20 20 C 1.53953 * 110.81894 * 138.25248 * 19 18 16 21 21 C 1.51537 * 109.72565 * 320.30449 * 20 19 18 22 22 O 1.42154 * 108.76817 * 91.29370 * 21 20 19 23 23 C 1.38011 * 119.43755 * 272.78270 * 22 21 20 24 24 C 1.45123 * 118.75466 * 6.12334 * 18 16 14 25 25 C 1.47014 * 108.70365 * 335.87116 * 13 12 11 26 26 H 0.96996 * 120.00464 * 0.02562 * 1 2 3 27 27 H 0.96704 * 114.00097 * 56.75388 * 10 9 7 28 28 H 1.09006 * 111.00383 * 88.06509 * 11 9 7 29 29 H 1.09000 * 111.01101 * 324.21178 * 11 9 7 30 30 H 1.09000 * 110.36659 * 155.85066 * 12 11 9 31 31 H 1.09006 * 110.36758 * 278.06457 * 12 11 9 32 32 H 1.08995 * 109.16477 * 258.76202 * 19 18 16 33 33 H 1.08995 * 109.17066 * 17.97312 * 19 18 16 34 34 H 1.08993 * 109.45884 * 200.17123 * 20 19 18 35 35 H 1.09000 * 109.28006 * 80.31832 * 20 19 18 36 36 H 1.09000 * 109.58787 * 331.50279 * 21 20 19 37 37 H 1.09000 * 109.70200 * 211.15108 * 21 20 19 38 38 H 1.09006 * 109.47007 * 303.42098 * 23 22 21 39 39 H 1.08999 * 109.46736 * 183.42667 * 23 22 21 40 40 H 1.08994 * 109.46359 * 29.31447 * 24 18 16 41 41 H 1.08998 * 109.45543 * 149.27844 * 24 18 16 42 42 H 1.08993 * 109.88334 * 120.47730 * 25 13 12 43 43 H 1.09004 * 109.88306 * 241.48859 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 0.3630 -2.5718 1.1176 11 6 2.2335 -3.7000 0.0005 12 6 1.3759 -4.8034 -0.6679 13 7 0.5949 -4.0998 -1.7016 14 6 0.0738 -4.6616 -2.8104 15 8 -0.5542 -3.9831 -3.5965 16 6 0.2692 -6.1200 -3.0717 17 8 0.7993 -6.8207 -2.2348 18 7 -0.1434 -6.6570 -4.2370 19 6 -0.0571 -8.1188 -4.4147 20 6 -1.3184 -8.6608 -5.1114 21 6 -2.5439 -7.9461 -4.5788 22 8 -2.8032 -6.8121 -5.3959 23 6 -2.1815 -5.6136 -5.1099 24 6 -0.6504 -5.7746 -5.2716 25 6 0.4793 -2.6840 -1.3230 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2717 -1.8437 1.1635 28 1 2.5075 -3.9807 1.0176 29 1 3.1198 -3.4799 -0.5945 30 1 2.0169 -5.5576 -1.1245 31 1 0.7120 -5.2634 0.0640 32 1 0.8190 -8.3547 -5.0186 33 1 0.0442 -8.5926 -3.4383 34 1 -1.4089 -9.7297 -4.9183 35 1 -1.2374 -8.4914 -6.1851 36 1 -2.3624 -7.6240 -3.5535 37 1 -3.4014 -8.6185 -4.6041 38 1 -2.4099 -5.3214 -4.0849 39 1 -2.5404 -4.8456 -5.7952 40 1 -0.1714 -4.7995 -5.1841 41 1 -0.4314 -6.2000 -6.2510 42 1 0.9176 -2.0559 -2.0985 43 1 -0.5695 -2.4221 -1.1829 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326529716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:35 Heat of formation + Delta-G solvation = -155.786630 kcal Electronic energy + Delta-G solvation = -27726.247044 eV Core-core repulsion = 23771.771514 eV Total energy + Delta-G solvation = -3954.475530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.29216 -40.60631 -39.52653 -39.00288 -36.80345 -35.91852 -34.20058 -34.02091 -31.92355 -29.81162 -29.74476 -28.19991 -27.35429 -25.59160 -24.15003 -23.21124 -21.83845 -21.38655 -20.34446 -19.20511 -18.50809 -18.32932 -17.72363 -17.47583 -17.18167 -17.08210 -16.80887 -16.43799 -16.09300 -15.66439 -15.03006 -14.86147 -14.81820 -14.80165 -14.42476 -14.10785 -13.87899 -13.58701 -13.54894 -13.45381 -13.12228 -12.89669 -12.68626 -12.51992 -12.34488 -12.29304 -12.22963 -12.07116 -11.95306 -11.62086 -11.22377 -10.75518 -10.68134 -10.45701 -10.24699 -9.94696 -9.65957 -8.29226 -6.45170 0.26030 1.16968 1.41189 1.44769 1.55257 2.00528 2.27456 2.38542 2.78567 2.96710 3.05597 3.72308 3.76554 3.85783 4.02902 4.04507 4.11938 4.13904 4.18274 4.30871 4.37323 4.45004 4.57750 4.65652 4.67586 4.74795 4.78950 4.87693 4.94667 5.01647 5.05733 5.11046 5.13038 5.29701 5.31774 5.41932 5.71962 5.81202 5.99410 6.27854 6.47939 6.58877 6.63726 6.84556 7.26893 7.36384 8.77511 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.003653 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.357264 B = 7662.325252 C = 8189.528340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.028 3.972 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.069 0.931 9 C 0.233 3.767 10 O -0.590 6.590 11 C -0.115 4.115 12 C 0.112 3.888 13 N -0.584 5.584 14 C 0.498 3.502 15 O -0.541 6.541 16 C 0.507 3.493 17 O -0.530 6.530 18 N -0.577 5.577 19 C 0.102 3.898 20 C -0.152 4.152 21 C 0.064 3.936 22 O -0.399 6.399 23 C 0.075 3.925 24 C 0.062 3.938 25 C 0.118 3.882 26 H 0.272 0.728 27 H 0.379 0.621 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.029 0.971 37 H 0.113 0.887 38 H 0.019 0.981 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.050 0.950 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 -15.485 -10.679 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.173 4.173 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.087 0.913 9 C 0.193 3.807 10 O -0.399 6.399 11 C -0.153 4.153 12 C -0.010 4.010 13 N -0.316 5.316 14 C 0.282 3.718 15 O -0.421 6.421 16 C 0.289 3.711 17 O -0.408 6.408 18 N -0.310 5.310 19 C -0.018 4.018 20 C -0.190 4.190 21 C -0.012 4.012 22 O -0.318 6.318 23 C -0.003 4.003 24 C -0.061 4.061 25 C -0.005 4.005 26 H 0.082 0.918 27 H 0.230 0.770 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.047 0.953 37 H 0.131 0.869 38 H 0.037 0.963 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.069 0.931 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.398 -16.012 -10.753 19.338 hybrid contribution -0.021 1.932 0.359 1.965 sum -1.419 -14.080 -10.393 17.558 Atomic orbital electron populations 1.69668 1.07093 1.28650 1.50239 1.25797 0.95805 1.02760 0.92894 0.85386 0.79071 0.78838 0.77628 1.19002 1.20684 1.20401 1.21851 0.94039 0.91085 1.52495 0.91302 1.19709 0.86317 0.93523 0.81167 1.86088 1.51308 1.53012 1.49488 1.22831 0.97306 0.93524 1.01592 1.22550 0.94015 0.95024 0.89362 1.48733 1.50434 1.11638 1.20791 1.20184 0.81042 0.89018 0.81587 1.90639 1.41511 1.64607 1.45305 1.20033 0.79879 0.87797 0.83361 1.90684 1.42043 1.62225 1.45815 1.47933 1.60482 1.08982 1.13647 1.22297 1.00025 0.76511 1.02974 1.22489 0.92454 1.02177 1.01845 1.22418 0.99119 0.86944 0.92760 1.86253 1.69728 1.18802 1.56990 1.22371 0.91438 0.86190 1.00342 1.23015 0.96224 0.95782 0.91066 1.22776 0.99977 0.78277 0.99423 0.91799 0.76953 0.89188 0.89532 0.88264 0.91623 0.89113 0.89615 0.86332 0.89196 0.95285 0.86914 0.96280 0.86541 0.88064 0.87547 0.93147 0.94070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.59 10.98 21.44 0.24 -48.36 16 2 C 0.03 1.45 5.28 84.65 0.45 1.89 16 3 Si 0.97 41.15 29.54 68.60 2.03 43.17 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.56 -28.80 8.11 25.60 0.21 -28.59 16 8 H 0.07 3.48 7.76 -2.91 -0.02 3.45 16 9 C 0.23 11.35 0.86 -10.35 -0.01 11.34 16 10 O -0.59 -30.28 13.09 -148.98 -1.95 -32.23 16 11 C -0.11 -4.61 6.22 31.98 0.20 -4.41 16 12 C 0.11 4.27 5.96 86.85 0.52 4.79 16 13 N -0.58 -24.56 3.33 -813.37 -2.71 -27.27 16 14 C 0.50 19.42 7.69 87.27 0.67 20.09 16 15 O -0.54 -22.01 12.06 -3.25 -0.04 -22.05 16 16 C 0.51 16.67 7.63 87.27 0.67 17.33 16 17 O -0.53 -18.40 13.23 -3.24 -0.04 -18.44 16 18 N -0.58 -14.74 2.18 -818.82 -1.79 -16.53 16 19 C 0.10 1.86 6.16 86.51 0.53 2.39 16 20 C -0.15 -2.02 5.79 30.44 0.18 -1.85 16 21 C 0.06 1.18 6.37 71.50 0.46 1.63 16 22 O -0.40 -9.23 9.86 -117.81 -1.16 -10.39 16 23 C 0.07 1.90 6.12 72.60 0.44 2.34 16 24 C 0.06 1.48 5.10 87.25 0.45 1.93 16 25 C 0.12 5.71 5.53 86.73 0.48 6.19 16 26 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.38 20.22 6.98 -74.05 -0.52 19.70 16 28 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 29 H 0.09 3.28 8.02 -2.39 -0.02 3.26 16 30 H 0.10 3.45 6.33 -2.39 -0.02 3.44 16 31 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.73 7.07 -2.39 -0.02 1.71 16 34 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.11 8.01 -2.39 -0.02 1.09 16 36 H 0.03 0.67 7.41 -2.39 -0.02 0.65 16 37 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.02 0.60 7.20 -2.38 -0.02 0.58 16 39 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.10 2.91 5.39 -2.39 -0.01 2.89 16 41 H 0.11 1.95 8.11 -2.39 -0.02 1.93 16 42 H 0.05 2.61 7.81 -2.39 -0.02 2.59 16 43 H 0.04 2.19 8.07 -2.38 -0.02 2.17 16 Total: -1.00 -61.04 337.75 0.33 -60.71 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.52 Total: 36.30 kcal Atomic # 6 Polarization: 29.84 SS G_CDS: 5.23 Total: 35.08 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -4.26 Total: -92.15 kcal Atomic # 8 Polarization: -79.92 SS G_CDS: -3.19 Total: -83.11 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -61.04 0.33 -60.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326529716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.074 kcal (2) G-P(sol) polarization free energy of solvation -61.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds