Wall clock time and date at job start Fri Apr 10 2020 18:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34139 * 118.70713 * 2 1 4 4 O 1.21225 * 119.35767 * 359.45734 * 3 2 1 5 5 C 1.50589 * 121.28089 * 179.42755 * 3 2 1 6 6 C 1.53250 * 109.15832 * 29.12059 * 5 3 2 7 7 C 1.53239 * 108.56720 * 304.38259 * 6 5 3 8 8 H 1.09001 * 109.52204 * 295.64931 * 7 6 5 9 9 N 1.46498 * 109.52454 * 175.51856 * 7 6 5 10 10 C 1.34780 * 120.00162 * 154.99644 * 9 7 6 11 11 O 1.21594 * 119.99531 * 0.02562 * 10 9 7 12 12 N 1.34771 * 120.00233 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00290 * 180.02562 * 12 10 9 14 14 C 1.50692 * 109.47369 * 179.97438 * 13 12 10 15 15 O 1.21294 * 119.99938 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00186 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00467 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99845 * 0.02562 * 17 16 14 19 19 C 1.38943 * 120.00528 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99723 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00261 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46970 * 60.00547 * 21 19 17 23 23 H 1.48502 * 109.47443 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47574 * 300.00788 * 21 19 17 25 25 C 1.34139 * 118.70147 * 179.73101 * 2 1 3 26 26 O 1.21224 * 119.36410 * 0.54852 * 25 2 1 27 27 H 1.09001 * 109.47060 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47073 * 119.99935 * 1 2 3 29 29 H 1.09000 * 109.47212 * 240.00017 * 1 2 3 30 30 H 1.09001 * 109.52288 * 149.01959 * 5 3 2 31 31 H 1.08994 * 109.52470 * 269.21445 * 5 3 2 32 32 H 1.09000 * 109.62159 * 64.10663 * 6 5 3 33 33 H 1.08997 * 109.61774 * 184.66075 * 6 5 3 34 34 H 0.96993 * 120.00106 * 335.00299 * 9 7 6 35 35 H 0.97003 * 120.00032 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.46796 * 300.00262 * 13 12 10 37 37 H 1.08999 * 109.47261 * 59.99504 * 13 12 10 38 38 H 0.96998 * 119.99885 * 359.97438 * 16 14 13 39 39 H 0.97002 * 119.99692 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1094 1.1765 0.0000 4 8 1.4682 2.2053 -0.0100 5 6 3.6137 1.2442 0.0129 6 6 4.1790 0.0000 -0.6807 7 6 3.6137 -1.2443 0.0123 8 1 3.9688 -1.2806 1.0422 9 7 4.0557 -2.4452 -0.7008 10 6 4.1327 -3.6241 -0.0521 11 8 3.8349 -3.6909 1.1249 12 7 4.5398 -4.7289 -0.7079 13 6 4.6230 -6.0104 -0.0029 14 6 5.1000 -7.0771 -0.9545 15 8 5.3458 -6.7948 -2.1082 16 7 5.2525 -8.3451 -0.5238 17 6 5.6859 -9.3158 -1.3896 18 1 5.9055 -9.0643 -2.4167 19 6 5.8436 -10.6228 -0.9455 20 7 5.5768 -10.9288 0.3044 21 14 6.4334 -11.9455 -2.1253 22 1 7.7745 -11.5800 -2.6482 23 1 6.5174 -13.2446 -1.4109 24 1 5.4770 -12.0633 -3.2552 25 6 2.1093 -1.1766 0.0055 26 8 1.4681 -2.2053 0.0002 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 -0.3634 -0.5138 0.8900 30 1 3.9427 2.1379 -0.5174 31 1 3.9679 1.2795 1.0430 32 1 3.8843 0.0002 -1.7301 33 1 5.2662 0.0000 -0.6031 34 1 4.2930 -2.3920 -1.6397 35 1 4.7778 -4.6755 -1.6468 36 1 5.3241 -5.9235 0.8272 37 1 3.6385 -6.2792 0.3797 38 1 5.0555 -8.5709 0.3987 39 1 5.6865 -11.8414 0.6144 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326664610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:48 Heat of formation + Delta-G solvation = -125.690603 kcal Electronic energy + Delta-G solvation = -25435.606571 eV Core-core repulsion = 21378.895759 eV Total energy + Delta-G solvation = -4056.710812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.05067 -40.00127 -39.00113 -38.18256 -36.32502 -35.40622 -34.41961 -33.69539 -33.09590 -31.37271 -28.69040 -27.98293 -26.92580 -24.48514 -23.68734 -23.31652 -20.93677 -19.61854 -19.22154 -18.39340 -17.95373 -17.81741 -17.54916 -17.08970 -16.06845 -15.63259 -15.54201 -15.11605 -14.95386 -14.74693 -14.61296 -14.51916 -14.03049 -13.85962 -13.53790 -13.49470 -13.11426 -12.91176 -12.72105 -12.42005 -12.18634 -11.97770 -11.71177 -11.62776 -11.10742 -10.76154 -10.59793 -10.50871 -10.32034 -10.14119 -10.03184 -9.62582 -9.37214 -8.71421 -8.63008 -8.09978 -6.51135 -3.93300 1.19683 2.08607 2.31001 2.75203 3.13661 3.21608 3.25233 3.26235 3.56259 3.75156 3.94343 4.06131 4.11505 4.17538 4.44258 4.53469 4.85024 4.89817 4.95979 5.06731 5.08809 5.11229 5.17495 5.26968 5.33934 5.45798 5.89969 6.00686 6.06113 6.12426 6.63101 6.70524 6.89752 7.08280 7.45611 7.45938 7.92176 8.11899 8.45159 8.69998 9.04612 9.39550 9.87370 10.65681 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.039841 B = 0.002272 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.629212 B =12321.657718 C =12535.618539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.569 5.569 3 C 0.521 3.479 4 O -0.507 6.507 5 C -0.137 4.137 6 C -0.132 4.132 7 C 0.153 3.847 8 H 0.132 0.868 9 N -0.732 5.732 10 C 0.712 3.288 11 O -0.586 6.586 12 N -0.720 5.720 13 C 0.129 3.871 14 C 0.429 3.571 15 O -0.599 6.599 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.895 5.895 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.497 3.503 26 O -0.465 6.465 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.403 0.597 35 H 0.407 0.593 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.396 0.604 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 23.440 0.176 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.313 5.313 3 C 0.311 3.689 4 O -0.380 6.380 5 C -0.177 4.177 6 C -0.170 4.170 7 C 0.043 3.957 8 H 0.150 0.850 9 N -0.389 5.389 10 C 0.412 3.588 11 O -0.464 6.464 12 N -0.377 5.377 13 C 0.000 4.000 14 C 0.214 3.786 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.283 3.717 26 O -0.333 6.333 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.238 0.762 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.837 23.234 0.601 23.556 hybrid contribution 0.185 -0.912 -0.780 1.214 sum -3.652 22.322 -0.179 22.619 Atomic orbital electron populations 1.21949 0.77616 1.04772 1.03761 1.46609 1.10151 1.07689 1.66890 1.21021 0.91488 0.82549 0.73828 1.90736 1.68663 1.33089 1.45508 1.21895 0.89661 1.00864 1.05264 1.22047 1.03452 0.90818 1.00661 1.20725 0.88482 0.85657 1.00870 0.85025 1.44674 1.73179 1.06698 1.14300 1.15718 0.78017 0.80070 0.84979 1.90919 1.56009 1.84850 1.14584 1.44690 1.71104 1.06710 1.15153 1.20806 1.02504 0.82092 0.94560 1.19742 0.85873 0.84037 0.88914 1.90487 1.57552 1.81355 1.19152 1.41779 1.57036 1.06173 1.13343 1.19673 1.41567 0.87312 0.94937 0.87741 1.25328 0.97187 0.98489 0.96718 1.69611 1.47784 1.21081 1.14985 0.85868 0.79395 0.79061 0.79605 1.19781 1.20860 1.19789 1.21735 0.92008 0.82617 0.75297 1.90799 1.67942 1.32809 1.41772 0.88441 0.90678 0.90591 0.86097 0.86533 0.89592 0.87504 0.76175 0.75541 0.89889 0.89892 0.76991 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 9.81 59.85 0.59 1.13 16 2 N -0.57 -5.35 2.93 -123.16 -0.36 -5.71 16 3 C 0.52 4.21 7.48 -11.32 -0.08 4.12 16 4 O -0.51 -5.56 16.19 5.61 0.09 -5.47 16 5 C -0.14 -0.52 6.07 -27.81 -0.17 -0.69 16 6 C -0.13 -0.51 5.56 -26.48 -0.15 -0.66 16 7 C 0.15 1.31 2.69 -69.01 -0.19 1.12 16 8 H 0.13 1.17 7.58 -51.93 -0.39 0.77 16 9 N -0.73 -7.76 4.89 -59.74 -0.29 -8.05 16 10 C 0.71 11.11 8.00 -86.92 -0.70 10.42 16 11 O -0.59 -11.14 15.91 5.28 0.08 -11.05 16 12 N -0.72 -11.82 5.53 -66.42 -0.37 -12.19 16 13 C 0.13 2.38 6.15 -5.20 -0.03 2.35 16 14 C 0.43 9.77 7.85 -10.99 -0.09 9.69 16 15 O -0.60 -15.13 15.24 5.55 0.08 -15.04 16 16 N -0.55 -13.58 5.29 -10.97 -0.06 -13.63 16 17 C -0.31 -8.27 9.68 -14.94 -0.14 -8.42 16 18 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 20 N -0.89 -23.87 13.05 55.50 0.72 -23.15 16 21 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 C 0.50 5.57 7.30 -11.32 -0.08 5.49 16 26 O -0.47 -7.34 15.94 5.61 0.09 -7.25 16 27 H 0.10 0.81 6.73 -51.93 -0.35 0.46 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.12 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.40 3.16 8.62 -40.82 -0.35 2.81 16 35 H 0.41 6.40 7.45 -40.82 -0.30 6.10 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 340.82 15.07 5.14 5.14 Total: -1.00 -36.50 340.82 -5.64 -42.14 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -4.61 Total: 13.68 kcal Atomic # 6 Polarization: 26.26 SS G_CDS: -1.14 Total: 25.13 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: -0.35 Total: -62.73 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: 0.35 Total: -38.82 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.50 -5.64 -42.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326664610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.546 kcal (2) G-P(sol) polarization free energy of solvation -36.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds