Wall clock time and date at job start Fri Apr 10 2020 18:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34139 * 118.70713 * 2 1 4 4 O 1.21225 * 119.35767 * 359.45734 * 3 2 1 5 5 C 1.50589 * 121.28089 * 179.42755 * 3 2 1 6 6 C 1.53250 * 109.15832 * 29.12059 * 5 3 2 7 7 C 1.53239 * 108.56720 * 304.38259 * 6 5 3 8 8 H 1.09001 * 109.52204 * 295.64931 * 7 6 5 9 9 N 1.46498 * 109.52454 * 175.51856 * 7 6 5 10 10 C 1.34780 * 120.00162 * 154.99644 * 9 7 6 11 11 O 1.21594 * 119.99531 * 0.02562 * 10 9 7 12 12 N 1.34771 * 120.00233 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00290 * 180.02562 * 12 10 9 14 14 C 1.50692 * 109.47369 * 179.97438 * 13 12 10 15 15 O 1.21294 * 119.99938 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00186 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00467 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99845 * 0.02562 * 17 16 14 19 19 C 1.38943 * 120.00528 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99723 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00261 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46970 * 60.00547 * 21 19 17 23 23 H 1.48502 * 109.47443 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47574 * 300.00788 * 21 19 17 25 25 C 1.34139 * 118.70147 * 179.73101 * 2 1 3 26 26 O 1.21224 * 119.36410 * 0.54852 * 25 2 1 27 27 H 1.09001 * 109.47060 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47073 * 119.99935 * 1 2 3 29 29 H 1.09000 * 109.47212 * 240.00017 * 1 2 3 30 30 H 1.09001 * 109.52288 * 149.01959 * 5 3 2 31 31 H 1.08994 * 109.52470 * 269.21445 * 5 3 2 32 32 H 1.09000 * 109.62159 * 64.10663 * 6 5 3 33 33 H 1.08997 * 109.61774 * 184.66075 * 6 5 3 34 34 H 0.96993 * 120.00106 * 335.00299 * 9 7 6 35 35 H 0.97003 * 120.00032 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.46796 * 300.00262 * 13 12 10 37 37 H 1.08999 * 109.47261 * 59.99504 * 13 12 10 38 38 H 0.96998 * 119.99885 * 359.97438 * 16 14 13 39 39 H 0.97002 * 119.99692 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1094 1.1765 0.0000 4 8 1.4682 2.2053 -0.0100 5 6 3.6137 1.2442 0.0129 6 6 4.1790 0.0000 -0.6807 7 6 3.6137 -1.2443 0.0123 8 1 3.9688 -1.2806 1.0422 9 7 4.0557 -2.4452 -0.7008 10 6 4.1327 -3.6241 -0.0521 11 8 3.8349 -3.6909 1.1249 12 7 4.5398 -4.7289 -0.7079 13 6 4.6230 -6.0104 -0.0029 14 6 5.1000 -7.0771 -0.9545 15 8 5.3458 -6.7948 -2.1082 16 7 5.2525 -8.3451 -0.5238 17 6 5.6859 -9.3158 -1.3896 18 1 5.9055 -9.0643 -2.4167 19 6 5.8436 -10.6228 -0.9455 20 7 5.5768 -10.9288 0.3044 21 14 6.4334 -11.9455 -2.1253 22 1 7.7745 -11.5800 -2.6482 23 1 6.5174 -13.2446 -1.4109 24 1 5.4770 -12.0633 -3.2552 25 6 2.1093 -1.1766 0.0055 26 8 1.4681 -2.2053 0.0002 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 -0.3634 -0.5138 0.8900 30 1 3.9427 2.1379 -0.5174 31 1 3.9679 1.2795 1.0430 32 1 3.8843 0.0002 -1.7301 33 1 5.2662 0.0000 -0.6031 34 1 4.2930 -2.3920 -1.6397 35 1 4.7778 -4.6755 -1.6468 36 1 5.3241 -5.9235 0.8272 37 1 3.6385 -6.2792 0.3797 38 1 5.0555 -8.5709 0.3987 39 1 5.6865 -11.8414 0.6144 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326664610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:47 Heat of formation + Delta-G solvation = -156.783205 kcal Electronic energy + Delta-G solvation = -25436.954848 eV Core-core repulsion = 21378.895759 eV Total energy + Delta-G solvation = -4058.059089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.81508 -41.18385 -40.17575 -39.71715 -37.12204 -36.31359 -36.14989 -35.26655 -33.90308 -33.33943 -29.79243 -28.72995 -28.14343 -26.27624 -24.37263 -23.99542 -22.12208 -21.36234 -20.18481 -20.00611 -19.28030 -18.55057 -18.39322 -17.90461 -17.38905 -17.06487 -16.80539 -16.50024 -16.04689 -15.98255 -15.67550 -15.49319 -15.37850 -15.25370 -15.06485 -14.17005 -13.94249 -13.78067 -13.68981 -13.52812 -13.48527 -13.35622 -12.93800 -12.88742 -12.45806 -12.13276 -12.11839 -11.68275 -11.54840 -11.46742 -11.25650 -10.86170 -10.54358 -10.46518 -10.10033 -9.94441 -8.49712 -6.00037 0.43290 1.26552 1.39148 1.43632 1.51396 1.55513 1.84686 1.91418 2.14514 2.29436 2.87757 3.01777 3.17567 3.27329 3.48834 3.59356 3.90970 4.10214 4.22435 4.25170 4.32556 4.37300 4.41355 4.46809 4.47943 4.70093 4.84894 4.94792 5.03732 5.23477 5.31228 5.39641 5.85131 5.90589 5.94073 6.37444 6.49122 6.67910 6.98088 7.04452 7.43218 7.51402 7.95477 8.67024 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.039841 B = 0.002272 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.629212 B =12321.657718 C =12535.618539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.571 5.571 3 C 0.519 3.481 4 O -0.536 6.536 5 C -0.127 4.127 6 C -0.117 4.117 7 C 0.150 3.850 8 H 0.133 0.867 9 N -0.715 5.715 10 C 0.711 3.289 11 O -0.622 6.622 12 N -0.721 5.721 13 C 0.142 3.858 14 C 0.435 3.565 15 O -0.623 6.623 16 N -0.560 5.560 17 C -0.337 4.337 18 H 0.087 0.913 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.997 3.003 22 H -0.268 1.268 23 H -0.273 1.273 24 H -0.271 1.271 25 C 0.500 3.500 26 O -0.521 6.521 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.097 0.903 33 H 0.139 0.861 34 H 0.419 0.581 35 H 0.411 0.589 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.399 0.601 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 24.878 -0.356 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.314 5.314 3 C 0.312 3.688 4 O -0.412 6.412 5 C -0.166 4.166 6 C -0.155 4.155 7 C 0.041 3.959 8 H 0.150 0.850 9 N -0.371 5.371 10 C 0.411 3.589 11 O -0.502 6.502 12 N -0.379 5.379 13 C 0.014 3.986 14 C 0.222 3.778 15 O -0.511 6.511 16 N -0.195 5.195 17 C -0.466 4.466 18 H 0.105 0.895 19 C -0.212 4.212 20 N -0.557 5.557 21 Si 0.821 3.179 22 H -0.193 1.193 23 H -0.197 1.197 24 H -0.196 1.196 25 C 0.288 3.712 26 O -0.393 6.393 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.116 0.884 33 H 0.157 0.843 34 H 0.256 0.744 35 H 0.249 0.751 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.233 0.767 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.398 24.748 0.046 24.864 hybrid contribution -0.330 -1.233 -0.599 1.410 sum -2.728 23.515 -0.553 23.680 Atomic orbital electron populations 1.21950 0.78050 1.04955 1.03461 1.46720 1.10287 1.07996 1.66405 1.21936 0.93279 0.81294 0.72292 1.90730 1.69777 1.33821 1.46844 1.22041 0.85731 1.01728 1.07122 1.22091 1.04978 0.87805 1.00591 1.21077 0.86660 0.86603 1.01610 0.84964 1.44537 1.71788 1.05777 1.15021 1.15862 0.77531 0.80863 0.84619 1.90895 1.57488 1.85555 1.16268 1.44606 1.71664 1.06363 1.15220 1.20573 1.02602 0.81754 0.93722 1.20391 0.84176 0.84184 0.89086 1.90463 1.58196 1.81866 1.20569 1.41837 1.57776 1.06663 1.13270 1.19705 1.43478 0.88642 0.94795 0.89472 1.26143 0.96759 0.99996 0.98332 1.69682 1.48032 1.21789 1.16191 0.84921 0.78882 0.76555 0.77587 1.19296 1.19729 1.19586 1.22288 0.93095 0.82140 0.73683 1.90780 1.69225 1.34643 1.44670 0.87865 0.90869 0.91158 0.83485 0.84267 0.88425 0.84312 0.74355 0.75086 0.88551 0.89734 0.76728 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.05 9.81 127.77 1.25 2.30 16 2 N -0.57 -10.32 2.93 -781.12 -2.29 -12.60 16 3 C 0.52 7.36 7.48 87.72 0.66 8.02 16 4 O -0.54 -11.01 16.19 -2.86 -0.05 -11.06 16 5 C -0.13 -0.46 6.07 29.90 0.18 -0.28 16 6 C -0.12 -0.42 5.56 30.76 0.17 -0.25 16 7 C 0.15 2.24 2.69 44.29 0.12 2.36 16 8 H 0.13 2.06 7.58 -2.39 -0.02 2.04 16 9 N -0.71 -13.82 4.89 -461.18 -2.26 -16.08 16 10 C 0.71 21.52 8.00 179.06 1.43 22.95 16 11 O -0.62 -23.38 15.91 -4.01 -0.06 -23.44 16 12 N -0.72 -23.16 5.53 -482.31 -2.67 -25.83 16 13 C 0.14 5.23 6.15 85.63 0.53 5.75 16 14 C 0.43 19.94 7.85 87.66 0.69 20.62 16 15 O -0.62 -31.66 15.24 -3.07 -0.05 -31.70 16 16 N -0.56 -28.11 5.29 -307.00 -1.62 -29.74 16 17 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 18 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 19 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 20 N -0.92 -48.84 13.05 21.66 0.28 -48.56 16 21 Si 1.00 41.61 29.55 68.60 2.03 43.63 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 C 0.50 10.87 7.30 87.72 0.64 11.51 16 26 O -0.52 -16.78 15.94 -2.86 -0.05 -16.83 16 27 H 0.10 1.73 6.73 -2.39 -0.02 1.72 16 28 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.14 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.42 5.54 8.62 -92.71 -0.80 4.74 16 35 H 0.41 12.59 7.45 -92.71 -0.69 11.90 16 36 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 39 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -80.88 340.82 -0.86 -81.74 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -1.08 Total: 35.29 kcal Atomic # 6 Polarization: 48.23 SS G_CDS: 6.95 Total: 55.18 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -8.55 Total: -132.81 kcal Atomic # 8 Polarization: -82.83 SS G_CDS: -0.20 Total: -83.03 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -80.88 -0.86 -81.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326664610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.039 kcal (2) G-P(sol) polarization free energy of solvation -80.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds