Wall clock time and date at job start Fri Apr 10 2020 18:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99900 * 2 1 4 4 H 1.48503 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47731 * 300.00609 * 3 2 1 6 6 H 1.48502 * 109.47017 * 60.00716 * 3 2 1 7 7 C 1.37875 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00318 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99534 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.88531 * 303.88092 * 9 7 2 11 11 C 1.55156 * 110.99876 * 180.02562 * 9 7 2 12 12 C 1.54327 * 102.94181 * 206.38340 * 11 9 7 13 13 N 1.47031 * 107.26879 * 22.19441 * 12 11 9 14 14 C 1.34774 * 125.64691 * 181.01415 * 13 12 11 15 15 O 1.21350 * 119.99946 * 180.02562 * 14 13 12 16 16 C 1.49450 * 120.00120 * 0.02562 * 14 13 12 17 17 O 1.21350 * 119.99922 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99706 * 180.02562 * 16 14 13 19 19 C 1.46504 * 119.99397 * 179.97438 * 18 16 14 20 20 C 1.53008 * 109.46597 * 179.97438 * 19 18 16 21 21 H 1.09002 * 110.32986 * 307.24802 * 20 19 18 22 22 C 1.54482 * 110.37209 * 185.00126 * 20 19 18 23 23 C 1.54506 * 104.06432 * 217.19494 * 22 20 19 24 24 C 1.54484 * 104.06023 * 359.97438 * 23 22 20 25 25 O 1.44420 * 110.37035 * 69.61967 * 20 19 18 26 26 C 1.47422 * 108.70136 * 1.05978 * 13 12 11 27 27 H 0.97003 * 119.99594 * 359.97438 * 1 2 3 28 28 H 0.96698 * 114.00190 * 56.12501 * 10 9 7 29 29 H 1.09001 * 110.72147 * 88.02275 * 11 9 7 30 30 H 1.08997 * 110.87696 * 324.82053 * 11 9 7 31 31 H 1.08998 * 109.88371 * 141.60876 * 12 11 9 32 32 H 1.08994 * 109.88463 * 262.78171 * 12 11 9 33 33 H 0.97000 * 120.00441 * 359.97438 * 18 16 14 34 34 H 1.08994 * 109.47642 * 299.99342 * 19 18 16 35 35 H 1.09002 * 109.47132 * 59.99999 * 19 18 16 36 36 H 1.09005 * 110.50739 * 335.83264 * 22 20 19 37 37 H 1.08993 * 110.51685 * 98.54256 * 22 20 19 38 38 H 1.08994 * 110.51397 * 118.64063 * 23 22 20 39 39 H 1.08996 * 110.50821 * 241.21955 * 23 22 20 40 40 H 1.09000 * 110.37327 * 142.81879 * 24 23 22 41 41 H 1.09004 * 110.37326 * 265.03888 * 24 23 22 42 42 H 1.09000 * 110.36378 * 217.03375 * 26 13 12 43 43 H 1.09001 * 110.46274 * 94.75551 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.3521 -2.5684 1.1082 11 6 2.2274 -3.7050 -0.0005 12 6 1.3977 -4.8215 -0.6689 13 7 0.3462 -4.1684 -1.4624 14 6 -0.6003 -4.8008 -2.1839 15 8 -1.4217 -4.1574 -2.8036 16 6 -0.6384 -6.2944 -2.2208 17 8 0.1832 -6.9377 -1.6015 18 7 -1.5847 -6.9266 -2.9427 19 6 -1.6217 -8.3908 -2.9793 20 6 -2.7835 -8.8496 -3.8629 21 1 -3.7121 -8.3768 -3.5432 22 6 -2.9195 -10.3877 -3.8166 23 6 -3.3160 -10.7732 -5.2593 24 6 -3.3734 -9.4223 -6.0064 25 8 -2.5123 -8.5447 -5.2483 26 6 0.4996 -2.7074 -1.3391 27 1 -0.4850 0.8401 0.0004 28 1 -0.2774 -1.8356 1.1505 29 1 2.4974 -3.9826 1.0184 30 1 3.1187 -3.4830 -0.5873 31 1 2.0363 -5.4188 -1.3197 32 1 0.9463 -5.4553 0.0943 33 1 -2.2413 -6.4124 -3.4381 34 1 -0.6838 -8.7679 -3.3869 35 1 -1.7598 -8.7761 -1.9690 36 1 -1.9687 -10.8472 -3.5462 37 1 -3.6998 -10.6812 -3.1146 38 1 -2.5614 -11.4232 -5.7021 39 1 -4.2915 -11.2593 -5.2702 40 1 -2.9987 -9.5351 -7.0238 41 1 -4.3936 -9.0386 -6.0191 42 1 -0.4773 -2.2251 -1.3047 43 1 1.0869 -2.3145 -2.1689 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327381498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:52 Heat of formation + Delta-G solvation = -160.961539 kcal Electronic energy + Delta-G solvation = -26322.422217 eV Core-core repulsion = 22367.722286 eV Total energy + Delta-G solvation = -3954.699931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40853 -39.70928 -38.34524 -37.13533 -35.09701 -34.10477 -32.51705 -32.16014 -30.55825 -30.19757 -27.94325 -26.54617 -25.36461 -23.54743 -22.40664 -21.55602 -21.47530 -19.73880 -19.38326 -17.45640 -17.17247 -17.01350 -16.36960 -16.10264 -16.00529 -15.51279 -15.17830 -15.04730 -14.51816 -14.24947 -14.13599 -13.97234 -13.16045 -13.04277 -12.88383 -12.61406 -12.56081 -12.25753 -12.18748 -11.77688 -11.63034 -11.61100 -11.50835 -11.08126 -11.07029 -11.04762 -10.75373 -10.53672 -10.45814 -10.18123 -10.16061 -9.39843 -9.21055 -9.11630 -8.69141 -8.40848 -7.86169 -6.30886 -4.40088 1.84160 2.65883 3.19344 3.28285 3.31913 3.44036 3.65392 3.92775 4.12782 4.25445 4.32880 4.48917 4.66808 4.74840 4.78506 4.96779 4.99450 5.11660 5.26262 5.38582 5.40106 5.49036 5.52026 5.59266 5.66115 5.82543 5.89181 6.08447 6.21364 6.36920 6.44797 6.53002 6.75276 6.81318 6.86153 7.18719 7.28000 7.32995 7.72982 7.90025 7.99603 8.08467 8.48465 8.64227 9.29838 9.45639 10.76510 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.034216 B = 0.002635 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.126714 B =10621.940149 C =11035.184145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.069 0.931 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.122 4.122 12 C 0.112 3.888 13 N -0.573 5.573 14 C 0.508 3.492 15 O -0.538 6.538 16 C 0.511 3.489 17 O -0.519 6.519 18 N -0.704 5.704 19 C 0.127 3.873 20 C 0.061 3.939 21 H 0.079 0.921 22 C -0.147 4.147 23 C -0.155 4.155 24 C 0.043 3.957 25 O -0.366 6.366 26 C 0.090 3.910 27 H 0.271 0.729 28 H 0.386 0.614 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.415 0.585 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.331 -18.806 -8.119 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.160 4.160 12 C -0.011 4.011 13 N -0.305 5.305 14 C 0.290 3.710 15 O -0.417 6.417 16 C 0.292 3.708 17 O -0.394 6.394 18 N -0.359 5.359 19 C 0.003 3.997 20 C 0.002 3.998 21 H 0.097 0.903 22 C -0.185 4.185 23 C -0.193 4.193 24 C -0.034 4.034 25 O -0.285 6.285 26 C -0.031 4.031 27 H 0.081 0.919 28 H 0.238 0.762 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.251 0.749 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.871 -19.231 -7.987 21.636 hybrid contribution -0.454 1.412 -0.413 1.540 sum -6.325 -17.819 -8.401 20.690 Atomic orbital electron populations 1.69576 1.06044 1.27933 1.49961 1.25102 0.95064 0.99876 0.93300 0.86312 0.80050 0.82563 0.77766 1.19534 1.20761 1.20730 1.21543 0.93817 0.89931 1.52048 0.91254 1.19610 0.85785 0.91953 0.81842 1.86084 1.51057 1.52938 1.49218 1.22722 0.97895 0.94867 1.00529 1.22142 0.89021 0.95497 0.94406 1.48618 1.27728 1.10022 1.44145 1.19550 0.82419 0.87510 0.81505 1.90724 1.39145 1.67344 1.44485 1.20402 0.81464 0.89282 0.79628 1.90722 1.38275 1.67868 1.42536 1.45657 1.32988 1.07064 1.50161 1.21494 0.98652 0.80066 0.99468 1.23292 0.97889 0.95111 0.83465 0.90271 1.22910 1.03271 0.94765 0.97590 1.22939 1.02623 0.98412 0.95316 1.23425 0.94904 0.88585 0.96461 1.89234 1.62534 1.60622 1.16093 1.23507 1.03000 0.75499 1.01128 0.91898 0.76207 0.90513 0.90426 0.91764 0.91171 0.74905 0.90186 0.89624 0.89989 0.89961 0.90488 0.90392 0.88947 0.92073 0.89551 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.67 10.72 55.43 0.59 -23.07 16 2 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 3 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -13.85 8.25 -34.44 -0.28 -14.13 16 8 H 0.07 1.76 7.76 -52.49 -0.41 1.35 16 9 C 0.25 6.09 0.89 -89.62 -0.08 6.01 16 10 O -0.58 -15.11 13.18 -35.23 -0.46 -15.58 16 11 C -0.12 -2.53 6.12 -24.90 -0.15 -2.68 16 12 C 0.11 2.21 5.49 -3.06 -0.02 2.20 16 13 N -0.57 -12.44 3.33 -171.02 -0.57 -13.01 16 14 C 0.51 10.55 7.91 -11.59 -0.09 10.45 16 15 O -0.54 -12.12 16.73 5.50 0.09 -12.03 16 16 C 0.51 8.98 7.86 -11.59 -0.09 8.89 16 17 O -0.52 -9.66 14.12 5.50 0.08 -9.58 16 18 N -0.70 -9.82 5.55 -60.72 -0.34 -10.16 16 19 C 0.13 1.36 5.28 -4.04 -0.02 1.34 16 20 C 0.06 0.52 3.32 -25.95 -0.09 0.44 16 21 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 22 C -0.15 -0.91 6.63 -25.16 -0.17 -1.08 16 23 C -0.16 -0.86 7.09 -25.16 -0.18 -1.04 16 24 C 0.04 0.31 7.63 37.94 0.29 0.59 16 25 O -0.37 -3.85 11.34 -35.23 -0.40 -4.25 16 26 C 0.09 2.16 5.63 -2.53 -0.01 2.15 16 27 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.39 10.27 6.93 45.56 0.32 10.59 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.08 1.49 8.02 -51.93 -0.42 1.08 16 31 H 0.06 1.17 7.69 -51.93 -0.40 0.77 16 32 H 0.07 1.40 7.58 -51.93 -0.39 1.00 16 33 H 0.41 5.60 7.94 -40.82 -0.32 5.28 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.49 7.87 -51.93 -0.41 0.09 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 2.30 7.64 -51.93 -0.40 1.90 16 43 H 0.07 1.64 8.03 -51.93 -0.42 1.23 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -30.25 354.30 -7.46 -37.71 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -5.79 Total: 14.60 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -0.99 Total: 14.84 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.31 Total: -46.25 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.69 Total: -41.44 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.25 -7.46 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327381498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.252 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds