Wall clock time and date at job start Fri Apr 10 2020 18:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29399 * 125.58262 * 2 1 4 4 N 1.40167 * 108.14354 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.35278 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47360 * 270.00206 * 5 4 3 7 7 O 1.20824 * 119.99839 * 0.02562 * 6 5 4 8 8 O 1.34221 * 119.99857 * 180.02562 * 6 5 4 9 9 C 1.45207 * 116.99792 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46942 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00250 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99993 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00177 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47024 * 179.97438 * 13 12 10 15 15 H 1.07993 * 120.00235 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00690 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.46829 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47224 * 119.99742 * 18 16 14 21 21 H 1.48501 * 109.47178 * 240.00033 * 18 16 14 22 22 C 1.34944 * 107.29845 * 0.02562 * 4 3 2 23 23 O 1.21813 * 126.30587 * 179.97438 * 22 4 3 24 24 N 1.34820 * 107.38961 * 0.26122 * 22 4 3 25 25 C 1.46510 * 125.82785 * 179.70520 * 24 22 4 26 26 H 1.09001 * 109.47199 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46341 * 120.02204 * 1 2 3 28 28 H 1.08992 * 109.46964 * 240.02483 * 1 2 3 29 29 H 1.08995 * 109.47110 * 30.00597 * 5 4 3 30 30 H 1.09003 * 109.46734 * 150.00055 * 5 4 3 31 31 H 1.08991 * 109.46887 * 299.99628 * 9 8 6 32 32 H 1.08997 * 109.46981 * 60.00027 * 9 8 6 33 33 H 0.97006 * 120.00147 * 359.97438 * 12 10 9 34 34 H 1.08997 * 109.47650 * 299.99686 * 13 12 10 35 35 H 1.08998 * 109.47389 * 60.00170 * 13 12 10 36 36 H 0.96997 * 120.00953 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.46966 * 0.02715 * 25 24 22 38 38 H 1.09003 * 109.46486 * 120.02741 * 25 24 22 39 39 H 1.08996 * 109.47262 * 240.02264 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2600 1.0524 0.0000 4 7 3.5973 0.6323 0.0006 5 6 4.7793 1.4977 0.0003 6 6 5.1850 1.7935 -1.4206 7 8 4.5514 1.3295 -2.3388 8 8 6.2501 2.5725 -1.6661 9 6 6.5823 2.8153 -3.0587 10 6 7.7966 3.7042 -3.1378 11 8 8.3294 4.0950 -2.1208 12 7 8.2900 4.0657 -4.3387 13 6 9.4702 4.9302 -4.4157 14 6 9.8150 5.1821 -5.8610 15 1 9.2148 4.7426 -6.6438 16 6 10.8967 5.9738 -6.1837 17 7 11.6279 6.5087 -5.2305 18 14 11.3237 6.2866 -7.9752 19 1 10.3536 5.5761 -8.8466 20 1 11.2626 7.7444 -8.2513 21 1 12.6947 5.7875 -8.2517 22 6 3.5940 -0.7171 0.0004 23 8 4.5738 -1.4408 0.0003 24 7 2.3064 -1.1169 -0.0062 25 6 1.8396 -2.5056 -0.0149 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3632 -0.5142 -0.8899 28 1 -0.3633 -0.5134 0.8901 29 1 4.5467 2.4307 0.5135 30 1 5.5981 0.9945 0.5147 31 1 6.7931 1.8669 -3.5525 32 1 5.7423 3.3035 -3.5527 33 1 7.8637 3.7534 -5.1522 34 1 9.2588 5.8786 -3.9217 35 1 10.3106 4.4427 -3.9217 36 1 12.3892 7.0653 -5.4575 37 1 2.6980 -3.1774 -0.0148 38 1 1.2333 -2.6906 0.8718 39 1 1.2403 -2.6819 -0.9081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327723266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:59 Heat of formation + Delta-G solvation = -70.505326 kcal Electronic energy + Delta-G solvation = -24824.537757 eV Core-core repulsion = 20770.219958 eV Total energy + Delta-G solvation = -4054.317799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.82863 -40.59355 -38.74208 -37.69546 -36.62052 -35.67082 -34.25526 -32.75589 -32.41511 -31.09508 -29.25234 -27.82862 -27.20760 -26.25678 -22.86722 -22.29843 -21.52831 -21.00924 -19.95302 -18.24004 -17.99854 -17.31626 -17.09394 -16.85767 -16.33990 -15.99904 -15.88603 -15.44711 -15.04882 -14.79085 -14.45634 -14.31183 -14.08282 -13.83703 -13.45070 -13.17152 -13.08548 -13.05560 -12.55111 -12.49383 -12.29111 -12.19525 -12.00635 -11.77181 -11.04319 -10.98450 -10.94967 -10.74703 -10.62530 -10.36138 -10.34682 -9.42612 -9.20131 -8.88689 -8.79100 -7.99516 -6.19850 -4.27228 1.20143 1.51539 1.98945 2.17137 2.48251 2.71508 3.16566 3.22421 3.29579 3.32685 3.91169 3.91666 4.15828 4.32180 4.50064 4.61970 4.64884 4.68168 4.83258 4.85989 5.03119 5.11055 5.15327 5.16294 5.21884 5.24518 5.32739 5.44496 5.65476 6.12345 6.22706 7.21979 7.24334 7.29756 7.45555 7.51322 7.61757 7.68775 7.91550 8.49115 8.70658 8.95472 9.39170 10.90299 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.036165 B = 0.002032 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.035993 B =13776.635903 C =13877.179236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.280 3.720 3 N -0.272 5.272 4 N -0.443 5.443 5 C 0.175 3.825 6 C 0.444 3.556 7 O -0.499 6.499 8 O -0.325 6.325 9 C 0.050 3.950 10 C 0.500 3.500 11 O -0.533 6.533 12 N -0.706 5.706 13 C 0.251 3.749 14 C -0.545 4.545 15 H 0.065 0.935 16 C 0.063 3.937 17 N -0.884 5.884 18 Si 0.905 3.095 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.655 3.345 23 O -0.547 6.547 24 N -0.558 5.558 25 C 0.096 3.904 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.393 0.607 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.659 -15.841 11.705 32.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 N -0.095 5.095 4 N -0.263 5.263 5 C 0.051 3.949 6 C 0.285 3.715 7 O -0.386 6.386 8 O -0.239 6.239 9 C -0.027 4.027 10 C 0.283 3.717 11 O -0.411 6.411 12 N -0.356 5.356 13 C 0.130 3.870 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.733 3.267 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.355 3.645 23 O -0.420 6.420 24 N -0.287 5.287 25 C -0.046 4.046 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.161 0.839 30 H 0.160 0.840 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.226 0.774 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.433 -15.025 12.161 31.154 hybrid contribution 0.131 -0.715 -1.673 1.824 sum -24.301 -15.740 10.488 30.794 Atomic orbital electron populations 1.20448 0.82662 1.06041 1.04330 1.24229 0.96570 0.81837 0.97224 1.77047 0.87120 1.20980 1.24350 1.48255 1.03879 1.04847 1.69350 1.20718 0.85337 0.97288 0.91530 1.24035 0.78429 0.76001 0.93059 1.90691 1.52689 1.48908 1.46298 1.86530 1.44776 1.62713 1.29845 1.22900 0.98460 1.01350 0.80020 1.19846 0.84719 0.81963 0.85148 1.90710 1.60411 1.55362 1.34579 1.46366 1.32358 1.50906 1.06009 1.19190 0.81238 0.89031 0.97491 1.21246 1.13702 1.32118 0.91237 0.91713 1.24959 0.95714 0.95211 0.98157 1.69979 1.17791 1.32204 1.32186 0.86332 0.78395 0.78096 0.83914 1.19617 1.20758 1.20763 1.16642 0.83762 0.83139 0.80980 1.91111 1.34747 1.57856 1.58287 1.45791 1.06494 1.08466 1.67948 1.21851 1.01892 0.77722 1.03135 0.88050 0.88927 0.88950 0.83925 0.84009 0.88460 0.88421 0.77414 0.95196 0.95204 0.92414 0.88602 0.90214 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.10 36.01 0.36 0.18 16 2 C 0.28 2.20 7.98 -154.17 -1.23 0.97 16 3 N -0.27 -2.97 12.53 32.97 0.41 -2.55 16 4 N -0.44 -5.50 3.11 -66.31 -0.21 -5.70 16 5 C 0.17 1.92 6.98 -5.19 -0.04 1.88 16 6 C 0.44 6.44 8.03 36.01 0.29 6.73 16 7 O -0.50 -8.47 16.18 -18.75 -0.30 -8.77 16 8 O -0.32 -5.20 9.75 -45.88 -0.45 -5.65 16 9 C 0.05 0.79 5.94 36.00 0.21 1.01 16 10 C 0.50 10.18 7.91 -10.99 -0.09 10.10 16 11 O -0.53 -13.10 16.50 -14.10 -0.23 -13.34 16 12 N -0.71 -14.81 5.55 -61.48 -0.34 -15.15 16 13 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 14 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 15 H 0.06 1.63 7.60 -52.49 -0.40 1.24 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.95 13.29 55.43 0.74 -25.21 16 18 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 C 0.66 8.67 8.61 -86.73 -0.75 7.93 16 23 O -0.55 -8.91 17.48 5.09 0.09 -8.82 16 24 N -0.56 -5.05 3.14 -125.40 -0.39 -5.45 16 25 C 0.10 0.44 10.86 59.85 0.65 1.09 16 26 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 28 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.14 1.33 8.11 -51.93 -0.42 0.91 16 31 H 0.10 1.38 8.13 -51.93 -0.42 0.96 16 32 H 0.10 1.35 8.13 -51.93 -0.42 0.93 16 33 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.10 0.56 7.73 -51.93 -0.40 0.16 16 38 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -39.88 356.43 -6.29 -46.17 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.92 Total: 0.21 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: -1.03 Total: 23.09 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.21 Total: -54.07 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.89 Total: -36.57 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -39.88 -6.29 -46.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327723266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.337 kcal (2) G-P(sol) polarization free energy of solvation -39.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds