Wall clock time and date at job start Fri Apr 10 2020 18:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29399 * 125.58262 * 2 1 4 4 N 1.40167 * 108.14354 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.35278 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47360 * 270.00206 * 5 4 3 7 7 O 1.20824 * 119.99839 * 0.02562 * 6 5 4 8 8 O 1.34221 * 119.99857 * 180.02562 * 6 5 4 9 9 C 1.45207 * 116.99792 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46942 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00250 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99993 * 180.02562 * 10 9 8 13 13 C 1.46495 * 120.00177 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47024 * 179.97438 * 13 12 10 15 15 H 1.07993 * 120.00235 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00690 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.46829 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47224 * 119.99742 * 18 16 14 21 21 H 1.48501 * 109.47178 * 240.00033 * 18 16 14 22 22 C 1.34944 * 107.29845 * 0.02562 * 4 3 2 23 23 O 1.21813 * 126.30587 * 179.97438 * 22 4 3 24 24 N 1.34820 * 107.38961 * 0.26122 * 22 4 3 25 25 C 1.46510 * 125.82785 * 179.70520 * 24 22 4 26 26 H 1.09001 * 109.47199 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.46341 * 120.02204 * 1 2 3 28 28 H 1.08992 * 109.46964 * 240.02483 * 1 2 3 29 29 H 1.08995 * 109.47110 * 30.00597 * 5 4 3 30 30 H 1.09003 * 109.46734 * 150.00055 * 5 4 3 31 31 H 1.08991 * 109.46887 * 299.99628 * 9 8 6 32 32 H 1.08997 * 109.46981 * 60.00027 * 9 8 6 33 33 H 0.97006 * 120.00147 * 359.97438 * 12 10 9 34 34 H 1.08997 * 109.47650 * 299.99686 * 13 12 10 35 35 H 1.08998 * 109.47389 * 60.00170 * 13 12 10 36 36 H 0.96997 * 120.00953 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.46966 * 0.02715 * 25 24 22 38 38 H 1.09003 * 109.46486 * 120.02741 * 25 24 22 39 39 H 1.08996 * 109.47262 * 240.02264 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2600 1.0524 0.0000 4 7 3.5973 0.6323 0.0006 5 6 4.7793 1.4977 0.0003 6 6 5.1850 1.7935 -1.4206 7 8 4.5514 1.3295 -2.3388 8 8 6.2501 2.5725 -1.6661 9 6 6.5823 2.8153 -3.0587 10 6 7.7966 3.7042 -3.1378 11 8 8.3294 4.0950 -2.1208 12 7 8.2900 4.0657 -4.3387 13 6 9.4702 4.9302 -4.4157 14 6 9.8150 5.1821 -5.8610 15 1 9.2148 4.7426 -6.6438 16 6 10.8967 5.9738 -6.1837 17 7 11.6279 6.5087 -5.2305 18 14 11.3237 6.2866 -7.9752 19 1 10.3536 5.5761 -8.8466 20 1 11.2626 7.7444 -8.2513 21 1 12.6947 5.7875 -8.2517 22 6 3.5940 -0.7171 0.0004 23 8 4.5738 -1.4408 0.0003 24 7 2.3064 -1.1169 -0.0062 25 6 1.8396 -2.5056 -0.0149 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3632 -0.5142 -0.8899 28 1 -0.3633 -0.5134 0.8901 29 1 4.5467 2.4307 0.5135 30 1 5.5981 0.9945 0.5147 31 1 6.7931 1.8669 -3.5525 32 1 5.7423 3.3035 -3.5527 33 1 7.8637 3.7534 -5.1522 34 1 9.2588 5.8786 -3.9217 35 1 10.3106 4.4427 -3.9217 36 1 12.3892 7.0653 -5.4575 37 1 2.6980 -3.1774 -0.0148 38 1 1.2333 -2.6906 0.8718 39 1 1.2403 -2.6819 -0.9081 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327723266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:13:58 Heat of formation + Delta-G solvation = -99.832168 kcal Electronic energy + Delta-G solvation = -24825.809465 eV Core-core repulsion = 20770.219958 eV Total energy + Delta-G solvation = -4055.589506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.59510 -41.82830 -40.43104 -38.64743 -37.83907 -36.48249 -36.21248 -34.44231 -33.43384 -31.79492 -30.70972 -28.74618 -28.34380 -27.35259 -24.70660 -23.35395 -22.28496 -21.95746 -21.69767 -19.45872 -19.22535 -18.55566 -18.08423 -18.02622 -17.69286 -17.08717 -17.05614 -16.85037 -16.65475 -16.26800 -15.89230 -15.05824 -14.84155 -14.72543 -14.67038 -14.23366 -14.08089 -13.88324 -13.80277 -13.59751 -13.48907 -13.21212 -12.96290 -12.93246 -12.92041 -12.76962 -12.24204 -12.06508 -12.03530 -11.54090 -11.48756 -11.13417 -10.94339 -10.84775 -9.96279 -9.72733 -8.31172 -6.47804 0.38310 0.85073 0.87305 1.21376 1.43140 1.43875 1.50450 1.52124 1.57877 2.00924 2.31772 2.51185 3.04004 3.26919 3.43521 3.66419 3.73442 3.94910 3.96717 3.99522 4.06506 4.15572 4.47112 4.71061 4.74449 4.77094 4.82377 4.89243 5.00941 5.07351 5.09227 5.20053 5.39122 5.58507 5.60383 5.80248 6.36387 6.50792 6.60797 6.73780 6.79543 7.17690 7.32081 8.81121 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.036165 B = 0.002032 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.035993 B =13776.635903 C =13877.179236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.294 3.706 3 N -0.309 5.309 4 N -0.451 5.451 5 C 0.173 3.827 6 C 0.449 3.551 7 O -0.525 6.525 8 O -0.338 6.338 9 C 0.061 3.939 10 C 0.501 3.499 11 O -0.580 6.580 12 N -0.698 5.698 13 C 0.266 3.734 14 C -0.557 4.557 15 H 0.085 0.915 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.986 3.014 19 H -0.254 1.254 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.636 3.364 23 O -0.592 6.592 24 N -0.555 5.555 25 C 0.086 3.914 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.173 0.827 30 H 0.154 0.846 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.412 0.588 34 H -0.005 1.005 35 H -0.007 1.007 36 H 0.269 0.731 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.613 -16.902 10.570 34.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.016 3.984 3 N -0.132 5.132 4 N -0.270 5.270 5 C 0.050 3.950 6 C 0.291 3.709 7 O -0.414 6.414 8 O -0.253 6.253 9 C -0.016 4.016 10 C 0.287 3.713 11 O -0.461 6.461 12 N -0.350 5.350 13 C 0.144 3.856 14 C -0.595 4.595 15 H 0.103 0.897 16 C -0.196 4.196 17 N -0.568 5.568 18 Si 0.809 3.191 19 H -0.177 1.177 20 H -0.204 1.204 21 H -0.205 1.205 22 C 0.335 3.665 23 O -0.469 6.469 24 N -0.282 5.282 25 C -0.054 4.054 26 H 0.125 0.875 27 H 0.132 0.868 28 H 0.141 0.859 29 H 0.190 0.810 30 H 0.172 0.828 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.248 0.752 34 H 0.013 0.987 35 H 0.011 0.989 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.133 0.867 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -27.476 -16.122 11.013 33.707 hybrid contribution 0.933 -0.442 -1.234 1.609 sum -26.543 -16.564 9.778 32.780 Atomic orbital electron populations 1.20792 0.78555 1.07200 1.06718 1.25315 0.98355 0.80603 0.94078 1.77077 0.86433 1.22377 1.27310 1.48422 1.04848 1.04729 1.69013 1.20990 0.85840 0.98770 0.89422 1.24688 0.77277 0.74764 0.94165 1.90668 1.53419 1.49925 1.47374 1.86532 1.45659 1.63317 1.29770 1.22753 0.96721 1.01317 0.80780 1.20581 0.85374 0.81423 0.83927 1.90687 1.62123 1.57139 1.36111 1.46048 1.31159 1.50305 1.07484 1.18653 0.81981 0.87901 0.97101 1.21635 1.14098 1.32150 0.91583 0.89651 1.26061 0.95490 0.94733 1.03326 1.70132 1.18521 1.33092 1.35026 0.85093 0.78298 0.78045 0.77659 1.17711 1.20394 1.20514 1.17021 0.84739 0.83383 0.81317 1.91055 1.36478 1.58879 1.60456 1.46073 1.05252 1.10305 1.66611 1.22233 1.01835 0.75167 1.06134 0.87533 0.86782 0.85929 0.80966 0.82845 0.86319 0.85721 0.75156 0.98747 0.98917 0.92165 0.90362 0.86728 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.08 10.10 71.24 0.72 0.64 16 2 C 0.29 3.96 7.98 137.70 1.10 5.06 16 3 N -0.31 -6.35 12.53 -49.60 -0.62 -6.97 16 4 N -0.45 -11.01 3.11 -481.77 -1.50 -12.51 16 5 C 0.17 3.74 6.98 85.63 0.60 4.33 16 6 C 0.45 12.81 8.03 71.24 0.57 13.38 16 7 O -0.53 -17.51 16.18 21.97 0.36 -17.16 16 8 O -0.34 -10.70 9.75 -44.97 -0.44 -11.14 16 9 C 0.06 1.87 5.94 71.24 0.42 2.29 16 10 C 0.50 20.60 7.91 87.66 0.69 21.29 16 11 O -0.58 -29.51 16.50 15.77 0.26 -29.25 16 12 N -0.70 -29.48 5.55 -466.80 -2.59 -32.07 16 13 C 0.27 14.52 5.43 85.64 0.46 14.99 16 14 C -0.56 -30.12 9.28 25.60 0.24 -29.88 16 15 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.20 5.46 84.65 0.46 0.67 16 17 N -0.93 -55.84 13.29 21.45 0.28 -55.55 16 18 Si 0.99 42.30 29.54 68.60 2.03 44.33 16 19 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 C 0.64 16.83 8.61 178.99 1.54 18.37 16 23 O -0.59 -19.88 17.48 -4.71 -0.08 -19.96 16 24 N -0.55 -9.22 3.14 -668.80 -2.10 -11.32 16 25 C 0.09 0.61 10.86 127.77 1.39 1.99 16 26 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.11 -0.27 8.14 -2.38 -0.02 -0.29 16 28 H 0.12 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.17 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.15 2.90 8.11 -2.39 -0.02 2.88 16 31 H 0.12 3.17 8.13 -2.39 -0.02 3.15 16 32 H 0.13 3.18 8.13 -2.39 -0.02 3.16 16 33 H 0.41 14.12 8.32 -92.70 -0.77 13.35 16 34 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.08 0.87 7.73 -2.39 -0.02 0.85 16 38 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -91.05 356.43 4.12 -86.93 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.32 Total: 11.52 kcal Atomic # 6 Polarization: 44.94 SS G_CDS: 8.20 Total: 53.14 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -6.53 Total: -118.42 kcal Atomic # 8 Polarization: -77.60 SS G_CDS: 0.09 Total: -77.51 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -91.05 4.12 -86.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327723266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.898 kcal (2) G-P(sol) polarization free energy of solvation -91.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds