Wall clock time and date at job start Fri Apr 10 2020 18:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99784 * 2 1 4 4 H 1.48498 * 109.47400 * 265.42050 * 3 2 1 5 5 H 1.48501 * 109.47122 * 25.42061 * 3 2 1 6 6 H 1.48500 * 109.47041 * 145.41928 * 3 2 1 7 7 C 1.37872 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99735 * 352.84182 * 7 2 1 9 9 C 1.50700 * 120.00324 * 172.84109 * 7 2 1 10 10 O 1.42899 * 110.88318 * 328.69251 * 9 7 2 11 11 C 1.55155 * 111.03489 * 92.59326 * 9 7 2 12 12 C 1.54338 * 103.01956 * 153.39735 * 11 9 7 13 13 N 1.47027 * 107.26241 * 338.14016 * 12 11 9 14 14 C 1.34774 * 125.64701 * 178.84739 * 13 12 11 15 15 O 1.21345 * 120.00319 * 179.69103 * 14 13 12 16 16 C 1.49453 * 120.00138 * 359.69409 * 14 13 12 17 17 O 1.21349 * 119.99627 * 4.86627 * 16 14 13 18 18 N 1.34775 * 120.00363 * 184.85731 * 16 14 13 19 19 C 1.46494 * 120.00313 * 183.89954 * 18 16 14 20 20 C 1.52999 * 109.47280 * 269.73191 * 19 18 16 21 21 O 1.42896 * 109.47533 * 64.99707 * 20 19 18 22 22 C 1.46500 * 119.99861 * 3.62645 * 18 16 14 23 23 C 1.52998 * 117.50233 * 181.65841 * 22 18 16 24 24 C 1.53004 * 117.49960 * 112.99988 * 22 18 16 25 25 C 1.47422 * 108.70644 * 358.58633 * 13 12 11 26 26 H 0.97004 * 120.00109 * 359.97438 * 1 2 3 27 27 H 0.96698 * 113.99610 * 292.50552 * 10 9 7 28 28 H 1.08992 * 110.72202 * 271.95470 * 11 9 7 29 29 H 1.08996 * 110.72295 * 35.23268 * 11 9 7 30 30 H 1.09000 * 109.99086 * 218.66668 * 12 11 9 31 31 H 1.08997 * 109.77868 * 97.49116 * 12 11 9 32 32 H 1.09004 * 109.46842 * 29.72956 * 19 18 16 33 33 H 1.08994 * 109.47345 * 149.72423 * 19 18 16 34 34 H 1.09003 * 109.47184 * 184.99953 * 20 19 18 35 35 H 1.09002 * 109.47033 * 304.99415 * 20 19 18 36 36 H 0.96696 * 114.00474 * 180.02562 * 21 20 19 37 37 H 1.09004 * 115.54759 * 327.33412 * 22 18 16 38 38 H 1.09006 * 117.49483 * 0.02562 * 23 22 18 39 39 H 1.08998 * 117.50117 * 145.01848 * 23 22 18 40 40 H 1.08994 * 117.50215 * 214.98585 * 24 22 18 41 41 H 1.09002 * 117.49451 * 0.02562 * 24 22 18 42 42 H 1.09001 * 110.36866 * 143.19172 * 25 13 12 43 43 H 1.08997 * 110.36921 * 265.40978 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5935 1.9907 -1.3956 5 1 1.4015 2.6787 0.6010 6 1 3.4949 1.4702 0.7946 7 6 2.0046 -1.1940 -0.0005 8 1 1.4709 -2.1257 0.1156 9 6 3.5028 -1.1990 -0.1632 10 8 3.9305 -0.1051 -0.9771 11 6 4.2128 -1.1767 1.2162 12 6 5.5664 -1.8572 0.9216 13 7 5.3924 -2.6669 -0.2933 14 6 6.3513 -3.4003 -0.8924 15 8 6.0923 -4.0370 -1.8924 16 6 7.7336 -3.4297 -0.3250 17 8 7.9715 -2.8655 0.7227 18 7 8.7159 -4.0828 -0.9769 19 6 10.0497 -4.1844 -0.3796 20 6 10.9012 -2.9949 -0.8277 21 8 10.3443 -1.7869 -0.3058 22 6 8.4483 -4.6963 -2.2800 23 6 9.5935 -5.4567 -2.9516 24 6 9.1511 -4.0980 -3.5003 25 6 3.9937 -2.5485 -0.7440 26 1 -0.4850 0.8401 0.0004 27 1 3.6532 -0.1705 -1.9012 28 1 4.3599 -0.1522 1.5577 29 1 3.6480 -1.7517 1.9500 30 1 5.8509 -2.4977 1.7563 31 1 6.3318 -1.0992 0.7554 32 1 9.9625 -4.1800 0.7069 33 1 10.5226 -5.1119 -0.7023 34 1 11.9188 -3.1161 -0.4563 35 1 10.9151 -2.9478 -1.9167 36 1 10.8340 -0.9899 -0.5509 37 1 7.4382 -5.0816 -2.4196 38 1 10.5461 -5.5008 -2.4235 39 1 9.3370 -6.3421 -3.5333 40 1 8.6036 -4.0899 -4.4427 41 1 9.8129 -3.2481 -3.3334 42 1 3.9461 -2.5327 -1.8329 43 1 3.3975 -3.3719 -0.3509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329446695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:03 Heat of formation + Delta-G solvation = -104.132834 kcal Electronic energy + Delta-G solvation = -27558.365566 eV Core-core repulsion = 23606.129913 eV Total energy + Delta-G solvation = -3952.235654 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 4.41 seconds Orbital eigenvalues (eV) -40.77163 -39.13135 -37.60539 -37.57224 -36.61849 -34.80782 -33.39651 -32.37584 -30.43290 -29.90086 -28.41494 -26.05839 -24.29885 -23.22011 -22.56420 -22.17931 -21.03357 -19.81716 -19.21454 -17.93739 -17.54743 -17.05060 -16.80638 -15.99542 -15.77281 -15.44072 -15.13307 -15.03667 -14.55828 -14.53399 -14.19506 -13.69212 -13.54065 -13.08186 -12.87402 -12.68426 -12.58482 -12.44528 -12.00218 -11.96337 -11.69109 -11.55168 -11.45668 -11.07468 -11.03868 -10.92094 -10.58112 -10.45243 -10.31233 -10.22110 -10.18617 -9.24833 -8.98952 -8.74168 -8.63656 -8.50671 -8.18157 -6.19910 -4.32014 1.70150 2.37455 3.42076 3.47168 3.49813 3.53789 3.69783 3.70847 4.03484 4.34847 4.50505 4.60082 4.71152 4.79414 4.85770 4.93350 5.02609 5.11858 5.13293 5.17000 5.41581 5.42469 5.52769 5.74308 5.74475 5.80704 5.87558 5.95822 6.02860 6.19555 6.29123 6.39656 6.51785 6.69761 6.80438 7.05388 7.11484 7.43447 7.46666 7.66569 7.90559 8.11572 8.28853 8.60964 8.80362 9.41685 10.88757 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.003839 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.161504 B = 7292.626490 C = 7727.766642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.950 3.050 4 H -0.292 1.292 5 H -0.326 1.326 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.220 3.780 10 O -0.558 6.558 11 C -0.125 4.125 12 C 0.108 3.892 13 N -0.574 5.574 14 C 0.516 3.484 15 O -0.535 6.535 16 C 0.517 3.483 17 O -0.492 6.492 18 N -0.564 5.564 19 C 0.109 3.891 20 C 0.056 3.944 21 O -0.552 6.552 22 C 0.063 3.937 23 C -0.194 4.194 24 C -0.192 4.192 25 C 0.087 3.913 26 H 0.267 0.733 27 H 0.371 0.629 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.374 0.626 37 H 0.173 0.827 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.606 -8.262 -3.806 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.785 3.215 4 H -0.220 1.220 5 H -0.257 1.257 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.366 6.366 11 C -0.164 4.164 12 C -0.015 4.015 13 N -0.306 5.306 14 C 0.299 3.701 15 O -0.415 6.415 16 C 0.299 3.701 17 O -0.364 6.364 18 N -0.297 5.297 19 C -0.013 4.013 20 C -0.024 4.024 21 O -0.356 6.356 22 C -0.041 4.041 23 C -0.232 4.232 24 C -0.231 4.231 25 C -0.035 4.035 26 H 0.076 0.924 27 H 0.219 0.781 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.220 0.780 37 H 0.189 0.811 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.288 -8.466 -2.917 23.094 hybrid contribution 0.775 1.006 -0.898 1.556 sum 22.063 -7.460 -3.815 23.600 Atomic orbital electron populations 1.69968 1.06851 1.27882 1.47466 1.25092 0.94850 1.00500 0.92455 0.85670 0.77739 0.79934 0.78110 1.21971 1.25730 1.19577 1.21081 0.88391 0.95571 1.53993 0.89990 1.20264 0.93883 0.80857 0.87070 1.86119 1.79741 1.46743 1.23987 1.23069 0.93222 1.01241 0.98832 1.22277 0.99279 0.94156 0.85740 1.48461 1.10729 1.43800 1.27563 1.19635 0.85425 0.80820 0.84222 1.90503 1.81714 1.43894 1.25340 1.20095 0.85707 0.79321 0.84941 1.90764 1.82422 1.40957 1.22259 1.47088 1.09791 1.53621 1.19243 1.21651 0.82205 0.96923 1.00513 1.22696 0.95781 0.86433 0.97446 1.86734 1.56178 1.15724 1.76971 1.22959 0.99969 1.00383 0.80786 1.23378 0.99086 0.96404 1.04284 1.23415 1.04249 0.96292 0.99093 1.23315 0.78599 1.01236 1.00301 0.92356 0.78062 0.89972 0.89582 0.91277 0.91066 0.88788 0.88549 0.92975 0.93458 0.78033 0.81064 0.88666 0.87735 0.87963 0.88924 0.90658 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 2 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 3 Si 0.95 23.39 24.86 -169.99 -4.23 19.16 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.33 -8.23 7.11 56.52 0.40 -7.83 16 6 H -0.27 -6.56 5.52 56.52 0.31 -6.24 16 7 C -0.55 -14.48 8.88 -34.44 -0.31 -14.78 16 8 H 0.08 2.32 8.00 -52.48 -0.42 1.90 16 9 C 0.22 4.86 0.70 -89.62 -0.06 4.79 16 10 O -0.56 -12.26 8.62 -35.23 -0.30 -12.56 16 11 C -0.13 -2.55 5.89 -24.89 -0.15 -2.70 16 12 C 0.11 2.01 5.49 -3.05 -0.02 1.99 16 13 N -0.57 -10.93 3.33 -171.02 -0.57 -11.50 16 14 C 0.52 9.41 7.82 -11.58 -0.09 9.32 16 15 O -0.53 -9.95 13.36 5.50 0.07 -9.88 16 16 C 0.52 8.62 7.37 -11.58 -0.09 8.53 16 17 O -0.49 -8.99 12.80 -5.94 -0.08 -9.07 16 18 N -0.56 -7.44 2.78 -166.61 -0.46 -7.91 16 19 C 0.11 1.12 5.37 -4.05 -0.02 1.10 16 20 C 0.06 0.50 7.38 37.16 0.27 0.78 16 21 O -0.55 -6.62 12.32 -46.67 -0.57 -7.20 16 22 C 0.06 0.74 5.51 -67.93 -0.37 0.37 16 23 C -0.19 -1.59 9.73 -26.70 -0.26 -1.85 16 24 C -0.19 -1.91 10.20 -26.69 -0.27 -2.19 16 25 C 0.09 1.74 6.07 -2.53 -0.02 1.73 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.37 7.22 9.00 45.56 0.41 7.63 16 28 H 0.08 1.72 6.61 -51.93 -0.34 1.38 16 29 H 0.09 1.69 8.03 -51.93 -0.42 1.27 16 30 H 0.07 1.22 7.61 -51.93 -0.40 0.82 16 31 H 0.07 1.38 7.68 -51.93 -0.40 0.98 16 32 H 0.09 1.09 7.47 -51.93 -0.39 0.70 16 33 H 0.10 0.69 6.05 -51.93 -0.31 0.38 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.05 0.40 5.81 -51.93 -0.30 0.10 16 36 H 0.37 2.84 9.12 45.56 0.42 3.25 16 37 H 0.17 2.39 5.21 -52.10 -0.27 2.11 16 38 H 0.10 0.64 6.14 -51.93 -0.32 0.32 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.92 6.09 -51.93 -0.32 0.60 16 42 H 0.08 1.49 8.02 -51.93 -0.42 1.07 16 43 H 0.08 1.59 7.99 -51.93 -0.41 1.18 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -33.09 339.20 -6.11 -39.20 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.38 Total: 10.83 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.47 Total: 9.10 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.26 Total: -44.70 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.88 Total: -38.71 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.23 Total: 19.16 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.09 -6.11 -39.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329446695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.929 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.41 seconds