Wall clock time and date at job start Fri Apr 10 2020 18:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99784 * 2 1 4 4 H 1.48498 * 109.47400 * 265.42050 * 3 2 1 5 5 H 1.48501 * 109.47122 * 25.42061 * 3 2 1 6 6 H 1.48500 * 109.47041 * 145.41928 * 3 2 1 7 7 C 1.37872 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99735 * 352.84182 * 7 2 1 9 9 C 1.50700 * 120.00324 * 172.84109 * 7 2 1 10 10 O 1.42899 * 110.88318 * 328.69251 * 9 7 2 11 11 C 1.55155 * 111.03489 * 92.59326 * 9 7 2 12 12 C 1.54338 * 103.01956 * 153.39735 * 11 9 7 13 13 N 1.47027 * 107.26241 * 338.14016 * 12 11 9 14 14 C 1.34774 * 125.64701 * 178.84739 * 13 12 11 15 15 O 1.21345 * 120.00319 * 179.69103 * 14 13 12 16 16 C 1.49453 * 120.00138 * 359.69409 * 14 13 12 17 17 O 1.21349 * 119.99627 * 4.86627 * 16 14 13 18 18 N 1.34775 * 120.00363 * 184.85731 * 16 14 13 19 19 C 1.46494 * 120.00313 * 183.89954 * 18 16 14 20 20 C 1.52999 * 109.47280 * 269.73191 * 19 18 16 21 21 O 1.42896 * 109.47533 * 64.99707 * 20 19 18 22 22 C 1.46500 * 119.99861 * 3.62645 * 18 16 14 23 23 C 1.52998 * 117.50233 * 181.65841 * 22 18 16 24 24 C 1.53004 * 117.49960 * 112.99988 * 22 18 16 25 25 C 1.47422 * 108.70644 * 358.58633 * 13 12 11 26 26 H 0.97004 * 120.00109 * 359.97438 * 1 2 3 27 27 H 0.96698 * 113.99610 * 292.50552 * 10 9 7 28 28 H 1.08992 * 110.72202 * 271.95470 * 11 9 7 29 29 H 1.08996 * 110.72295 * 35.23268 * 11 9 7 30 30 H 1.09000 * 109.99086 * 218.66668 * 12 11 9 31 31 H 1.08997 * 109.77868 * 97.49116 * 12 11 9 32 32 H 1.09004 * 109.46842 * 29.72956 * 19 18 16 33 33 H 1.08994 * 109.47345 * 149.72423 * 19 18 16 34 34 H 1.09003 * 109.47184 * 184.99953 * 20 19 18 35 35 H 1.09002 * 109.47033 * 304.99415 * 20 19 18 36 36 H 0.96696 * 114.00474 * 180.02562 * 21 20 19 37 37 H 1.09004 * 115.54759 * 327.33412 * 22 18 16 38 38 H 1.09006 * 117.49483 * 0.02562 * 23 22 18 39 39 H 1.08998 * 117.50117 * 145.01848 * 23 22 18 40 40 H 1.08994 * 117.50215 * 214.98585 * 24 22 18 41 41 H 1.09002 * 117.49451 * 0.02562 * 24 22 18 42 42 H 1.09001 * 110.36866 * 143.19172 * 25 13 12 43 43 H 1.08997 * 110.36921 * 265.40978 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5935 1.9907 -1.3956 5 1 1.4015 2.6787 0.6010 6 1 3.4949 1.4702 0.7946 7 6 2.0046 -1.1940 -0.0005 8 1 1.4709 -2.1257 0.1156 9 6 3.5028 -1.1990 -0.1632 10 8 3.9305 -0.1051 -0.9771 11 6 4.2128 -1.1767 1.2162 12 6 5.5664 -1.8572 0.9216 13 7 5.3924 -2.6669 -0.2933 14 6 6.3513 -3.4003 -0.8924 15 8 6.0923 -4.0370 -1.8924 16 6 7.7336 -3.4297 -0.3250 17 8 7.9715 -2.8655 0.7227 18 7 8.7159 -4.0828 -0.9769 19 6 10.0497 -4.1844 -0.3796 20 6 10.9012 -2.9949 -0.8277 21 8 10.3443 -1.7869 -0.3058 22 6 8.4483 -4.6963 -2.2800 23 6 9.5935 -5.4567 -2.9516 24 6 9.1511 -4.0980 -3.5003 25 6 3.9937 -2.5485 -0.7440 26 1 -0.4850 0.8401 0.0004 27 1 3.6532 -0.1705 -1.9012 28 1 4.3599 -0.1522 1.5577 29 1 3.6480 -1.7517 1.9500 30 1 5.8509 -2.4977 1.7563 31 1 6.3318 -1.0992 0.7554 32 1 9.9625 -4.1800 0.7069 33 1 10.5226 -5.1119 -0.7023 34 1 11.9188 -3.1161 -0.4563 35 1 10.9151 -2.9478 -1.9167 36 1 10.8340 -0.9899 -0.5509 37 1 7.4382 -5.0816 -2.4196 38 1 10.5461 -5.5008 -2.4235 39 1 9.3370 -6.3421 -3.5333 40 1 8.6036 -4.0899 -4.4427 41 1 9.8129 -3.2481 -3.3334 42 1 3.9461 -2.5327 -1.8329 43 1 3.3975 -3.3719 -0.3509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329446695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:14:02 Heat of formation + Delta-G solvation = -131.501734 kcal Electronic energy + Delta-G solvation = -27559.552371 eV Core-core repulsion = 23606.129913 eV Total energy + Delta-G solvation = -3953.422458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.03392 -40.48312 -39.07832 -38.69617 -37.42713 -36.42973 -34.47018 -34.34622 -32.08882 -30.80223 -30.07012 -27.77066 -25.65864 -24.28746 -23.55077 -23.26525 -22.16928 -21.53439 -20.40401 -19.49383 -18.82988 -18.13579 -18.11404 -17.38260 -17.11715 -16.91859 -16.67848 -16.28585 -16.02751 -15.57115 -15.23047 -15.14161 -14.84247 -14.55572 -14.31588 -14.15843 -13.90027 -13.65928 -13.40573 -13.32075 -13.28772 -12.78979 -12.78704 -12.32375 -12.27455 -12.16931 -12.11588 -12.01234 -11.80983 -11.54035 -11.25667 -10.90505 -10.66460 -10.45345 -10.22655 -9.82684 -9.54171 -8.34698 -6.47919 0.36759 1.18326 1.50308 1.53639 1.73855 2.12133 2.26336 2.45609 2.89782 2.94724 3.06540 3.40755 3.46940 3.77129 3.79979 4.00445 4.01020 4.07316 4.15090 4.21286 4.23406 4.36406 4.42804 4.51079 4.61892 4.75498 4.76187 4.80259 4.90021 4.95141 5.06741 5.16379 5.18521 5.21662 5.30460 5.37317 5.50626 6.00307 6.04985 6.25386 6.56445 6.60950 6.90257 6.90892 6.95304 7.30015 8.77900 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.003839 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.161504 B = 7292.626490 C = 7727.766642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.031 3.969 3 Si 1.005 2.995 4 H -0.283 1.283 5 H -0.335 1.335 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.218 3.782 10 O -0.561 6.561 11 C -0.123 4.123 12 C 0.123 3.877 13 N -0.581 5.581 14 C 0.511 3.489 15 O -0.541 6.541 16 C 0.512 3.488 17 O -0.516 6.516 18 N -0.551 5.551 19 C 0.101 3.899 20 C 0.055 3.945 21 O -0.587 6.587 22 C 0.027 3.973 23 C -0.157 4.157 24 C -0.192 4.192 25 C 0.097 3.903 26 H 0.268 0.732 27 H 0.382 0.618 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.389 0.611 37 H 0.148 0.852 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.101 -8.908 -4.613 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.169 4.169 3 Si 0.839 3.161 4 H -0.210 1.210 5 H -0.268 1.268 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.069 0.931 9 C 0.177 3.823 10 O -0.370 6.370 11 C -0.161 4.161 12 C 0.001 3.999 13 N -0.313 5.313 14 C 0.295 3.705 15 O -0.421 6.421 16 C 0.294 3.706 17 O -0.391 6.391 18 N -0.283 5.283 19 C -0.020 4.020 20 C -0.024 4.024 21 O -0.394 6.394 22 C -0.076 4.076 23 C -0.195 4.195 24 C -0.230 4.230 25 C -0.025 4.025 26 H 0.077 0.923 27 H 0.231 0.769 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.237 0.763 37 H 0.165 0.835 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 24.842 -9.145 -3.770 26.739 hybrid contribution -0.272 1.063 -0.730 1.318 sum 24.569 -8.082 -4.500 26.253 Atomic orbital electron populations 1.70072 1.08398 1.28575 1.50001 1.25770 0.95241 1.03415 0.92504 0.84774 0.76506 0.76393 0.78468 1.20997 1.26781 1.18855 1.21286 0.90658 0.94115 1.52415 0.93087 1.20122 0.91659 0.82089 0.88393 1.86075 1.79437 1.46608 1.24860 1.22995 0.94063 1.01418 0.97614 1.22113 0.97790 0.94034 0.86002 1.48461 1.10393 1.44569 1.27915 1.20138 0.86153 0.80169 0.84013 1.90525 1.82169 1.43843 1.25554 1.19791 0.85570 0.80154 0.85041 1.90747 1.82588 1.42529 1.23210 1.47139 1.10092 1.51817 1.19292 1.22014 0.80900 0.99394 0.99660 1.22815 0.96681 0.84894 0.97979 1.86690 1.57638 1.17354 1.77684 1.22854 1.00612 1.03223 0.80948 1.23511 0.98101 0.95851 1.01991 1.23446 1.03898 0.97764 0.97890 1.23001 0.79547 0.99782 1.00178 0.92321 0.76865 0.90294 0.89277 0.90121 0.91466 0.90348 0.84963 0.89905 0.92525 0.76264 0.83548 0.86296 0.86143 0.88019 0.88607 0.90542 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.96 21.45 0.30 -55.81 16 2 C 0.03 1.73 5.46 84.65 0.46 2.20 16 3 Si 1.00 48.13 24.86 68.60 1.71 49.84 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.34 -16.52 7.11 99.48 0.71 -15.81 16 6 H -0.26 -12.21 5.52 99.48 0.55 -11.66 16 7 C -0.55 -29.09 8.88 25.60 0.23 -28.86 16 8 H 0.05 2.98 8.00 -2.91 -0.02 2.96 16 9 C 0.22 9.57 0.70 -10.15 -0.01 9.56 16 10 O -0.56 -23.93 8.62 -148.98 -1.28 -25.21 16 11 C -0.12 -4.90 5.89 31.79 0.19 -4.72 16 12 C 0.12 4.48 5.49 86.73 0.48 4.95 16 13 N -0.58 -21.86 3.33 -813.34 -2.70 -24.56 16 14 C 0.51 18.42 7.82 87.27 0.68 19.10 16 15 O -0.54 -20.00 13.36 -3.23 -0.04 -20.05 16 16 C 0.51 16.65 7.37 87.27 0.64 17.29 16 17 O -0.52 -18.48 12.80 7.69 0.10 -18.38 16 18 N -0.55 -13.52 2.78 -799.41 -2.22 -15.75 16 19 C 0.10 1.78 5.37 86.38 0.46 2.24 16 20 C 0.05 0.81 7.38 71.98 0.53 1.34 16 21 O -0.59 -12.94 12.32 -138.04 -1.70 -14.64 16 22 C 0.03 0.58 5.51 44.99 0.25 0.83 16 23 C -0.16 -1.95 9.73 30.62 0.30 -1.65 16 24 C -0.19 -3.29 10.20 30.62 0.31 -2.98 16 25 C 0.10 3.88 6.07 86.86 0.53 4.41 16 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.38 14.38 9.00 -74.06 -0.67 13.71 16 28 H 0.08 3.21 6.61 -2.39 -0.02 3.19 16 29 H 0.09 3.47 8.03 -2.39 -0.02 3.45 16 30 H 0.08 2.76 7.61 -2.39 -0.02 2.74 16 31 H 0.07 2.53 7.68 -2.39 -0.02 2.51 16 32 H 0.08 1.67 7.47 -2.38 -0.02 1.65 16 33 H 0.13 1.30 6.05 -2.39 -0.01 1.28 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.74 5.81 -2.39 -0.01 0.72 16 36 H 0.39 5.20 9.12 -74.06 -0.68 4.53 16 37 H 0.15 3.97 5.21 -5.09 -0.03 3.94 16 38 H 0.12 0.93 6.14 -2.38 -0.01 0.92 16 39 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.10 1.60 6.09 -2.39 -0.01 1.59 16 42 H 0.08 3.01 8.02 -2.39 -0.02 2.99 16 43 H 0.07 3.03 7.99 -2.39 -0.02 3.01 16 Total: -1.00 -72.10 339.20 -1.24 -73.34 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -0.44 Total: 27.51 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 5.05 Total: 23.71 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -4.63 Total: -96.12 kcal Atomic # 8 Polarization: -75.36 SS G_CDS: -2.93 Total: -78.29 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.71 Total: 49.84 kcal Total: -72.10 -1.24 -73.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329446695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.158 kcal (2) G-P(sol) polarization free energy of solvation -72.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds