Wall clock time and date at job start Fri Apr 10 2020 18:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47319 * 2 1 4 4 C 1.37101 * 120.00169 * 263.45890 * 3 2 1 5 5 H 1.08002 * 119.99590 * 192.92972 * 4 3 2 6 6 C 1.38945 * 119.99996 * 12.92949 * 4 3 2 7 7 N 1.31416 * 120.00197 * 13.94927 * 6 4 3 8 8 Si 1.86800 * 119.99995 * 193.95031 * 6 4 3 9 9 H 1.48495 * 109.47018 * 59.99716 * 8 6 4 10 10 H 1.48498 * 109.46768 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47116 * 299.99955 * 8 6 4 12 12 C 1.34773 * 119.99689 * 83.45641 * 3 2 1 13 13 O 1.21296 * 120.00365 * 4.61387 * 12 3 2 14 14 C 1.50704 * 120.00063 * 184.61485 * 12 3 2 15 15 H 1.08999 * 110.85867 * 52.27312 * 14 12 3 16 16 C 1.54740 * 110.97215 * 288.47690 * 14 12 3 17 17 C 1.51689 * 102.55111 * 217.63065 * 16 14 12 18 18 C 1.47470 * 125.86417 * 195.35224 * 17 16 14 19 19 O 1.21463 * 120.00243 * 359.97438 * 18 17 16 20 20 O 1.34755 * 119.99688 * 179.97438 * 18 17 16 21 21 C 1.45195 * 116.99956 * 179.97438 * 20 18 17 22 22 C 1.53008 * 109.46797 * 60.00805 * 21 20 18 23 23 C 1.53006 * 109.47586 * 180.02562 * 21 20 18 24 24 C 1.52999 * 109.47442 * 300.00716 * 21 20 18 25 25 N 1.29056 * 108.26863 * 15.61675 * 17 16 14 26 26 O 1.41394 * 112.88242 * 359.94429 * 25 17 16 27 27 H 1.08995 * 109.47072 * 182.97093 * 1 2 3 28 28 H 1.08996 * 109.47008 * 302.96997 * 1 2 3 29 29 H 1.08996 * 109.47098 * 62.96944 * 1 2 3 30 30 H 1.09006 * 109.47294 * 240.00279 * 2 1 3 31 31 H 1.08999 * 109.47553 * 120.00377 * 2 1 3 32 32 H 0.96994 * 120.00294 * 179.97438 * 7 6 4 33 33 H 1.09001 * 110.79209 * 99.36275 * 16 14 12 34 34 H 1.09000 * 110.95542 * 335.97132 * 16 14 12 35 35 H 1.08998 * 109.46971 * 59.99890 * 22 21 20 36 36 H 1.08998 * 109.47164 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.46775 * 299.99398 * 22 21 20 38 38 H 1.08998 * 109.46608 * 60.00129 * 23 21 20 39 39 H 1.08998 * 109.47445 * 180.02562 * 23 21 20 40 40 H 1.08996 * 109.46795 * 300.00603 * 23 21 20 41 41 H 1.08997 * 109.47166 * 60.00058 * 24 21 20 42 42 H 1.09007 * 109.47354 * 179.97438 * 24 21 20 43 43 H 1.08995 * 109.47351 * 299.99636 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3744 1.9825 -1.1796 5 1 2.9249 2.9116 -1.1674 6 6 2.0271 1.3965 -2.3906 7 7 1.1361 0.4310 -2.4218 8 14 2.8265 1.9811 -3.9744 9 1 4.2959 1.7844 -3.8891 10 1 2.2887 1.2008 -5.1176 11 1 2.5309 3.4224 -4.1754 12 6 2.1176 2.0608 1.1596 13 8 1.8829 1.5037 2.2112 14 6 2.5202 3.5131 1.1498 15 1 1.8927 4.0852 0.4665 16 6 4.0170 3.6704 0.7905 17 6 4.4526 4.8144 1.6863 18 6 5.6929 5.5994 1.5439 19 8 6.4708 5.3483 0.6454 20 8 5.9632 6.5953 2.4105 21 6 7.2022 7.3252 2.2101 22 6 7.1922 7.9765 0.8257 23 6 7.3354 8.4082 3.2827 24 6 8.3850 6.3599 2.3111 25 7 3.5541 4.9791 2.5980 26 8 2.4773 4.0703 2.4791 27 1 -0.3633 -1.0262 0.0533 28 1 -0.3633 0.5592 0.8621 29 1 -0.3633 0.4670 -0.9154 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.8933 0.0221 -3.2672 33 1 4.1370 3.9345 -0.2602 34 1 4.5719 2.7621 1.0254 35 1 6.3496 8.6642 0.7538 36 1 8.1221 8.5249 0.6754 37 1 7.0976 7.2047 0.0618 38 1 7.3427 7.9439 4.2688 39 1 8.2653 8.9565 3.1320 40 1 6.4928 9.0959 3.2111 41 1 8.2904 5.5882 1.5472 42 1 9.3151 6.9079 2.1603 43 1 8.3921 5.8960 3.2974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281021929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:08 Heat of formation + Delta-G solvation = -91.610853 kcal Electronic energy + Delta-G solvation = -26913.406959 eV Core-core repulsion = 22961.714299 eV Total energy + Delta-G solvation = -3951.692660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.30592 -41.53740 -39.95771 -38.23889 -37.05809 -35.35389 -34.20561 -33.56094 -32.90960 -30.91646 -28.38270 -28.31414 -26.99039 -26.53649 -25.71295 -23.55539 -22.23870 -21.21438 -20.60181 -19.44424 -18.87090 -18.07243 -17.68656 -17.35925 -16.96675 -16.76921 -16.37576 -16.01174 -15.66623 -15.51494 -15.32002 -14.67423 -14.64770 -14.51651 -14.24700 -13.96405 -13.64806 -13.47318 -13.21265 -13.18211 -13.01859 -12.98422 -12.92546 -12.85505 -12.67468 -12.52090 -12.45310 -12.36922 -12.09780 -12.06120 -11.69170 -11.50516 -11.37386 -11.15908 -10.89904 -10.36023 -9.79648 -8.26869 -5.94815 -0.54257 0.86026 1.40059 1.43500 1.52507 1.59528 1.63540 1.83915 2.28749 2.72153 3.01823 3.08074 3.22787 3.32205 3.67381 3.75577 3.81959 3.91112 4.00849 4.11943 4.43485 4.51720 4.54058 4.59558 4.61854 4.74791 4.76547 4.80997 4.85578 4.87219 4.91688 5.07992 5.09482 5.19087 5.26264 5.32895 5.35348 5.44322 5.65242 5.76034 5.80223 6.40676 6.42945 7.05435 7.44866 7.85901 8.67728 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.003845 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.318767 B = 7280.483758 C = 8510.309739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.132 3.868 3 N -0.429 5.429 4 C -0.365 4.365 5 H 0.118 0.882 6 C 0.004 3.996 7 N -0.875 5.875 8 Si 0.987 3.013 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.438 3.562 13 O -0.630 6.630 14 C 0.050 3.950 15 H 0.124 0.876 16 C -0.105 4.105 17 C 0.064 3.936 18 C 0.556 3.444 19 O -0.477 6.477 20 O -0.339 6.339 21 C 0.102 3.898 22 C -0.183 4.183 23 C -0.137 4.137 24 C -0.184 4.184 25 N -0.226 5.226 26 O -0.181 6.181 27 H 0.057 0.943 28 H 0.011 0.989 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.027 0.973 32 H 0.274 0.726 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.101 0.899 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.796 13.463 1.267 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.009 3.991 3 N -0.147 5.147 4 C -0.492 4.492 5 H 0.136 0.864 6 C -0.200 4.200 7 N -0.513 5.513 8 Si 0.811 3.189 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.188 1.188 12 C 0.225 3.775 13 O -0.518 6.518 14 C -0.011 4.011 15 H 0.141 0.859 16 C -0.145 4.145 17 C -0.129 4.129 18 C 0.397 3.603 19 O -0.361 6.361 20 O -0.255 6.255 21 C 0.068 3.932 22 C -0.240 4.240 23 C -0.194 4.194 24 C -0.241 4.241 25 N 0.030 4.970 26 O -0.203 6.203 27 H 0.076 0.924 28 H 0.030 0.970 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.159 0.841 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.447 13.526 2.343 18.531 hybrid contribution -0.016 -0.735 -1.388 1.571 sum 12.431 12.791 0.955 17.862 Atomic orbital electron populations 1.21852 0.95901 1.00418 1.00410 1.21357 0.95132 0.82548 1.00022 1.43952 1.53670 1.11599 1.05441 1.20241 1.36117 1.10095 0.82714 0.86412 1.26081 0.95276 0.96487 1.02141 1.70153 1.27940 1.25184 1.27995 0.85059 0.78679 0.78675 0.76518 1.19173 1.20851 1.18845 1.19813 0.85553 0.87791 0.84293 1.90551 1.58587 1.70420 1.32283 1.23430 0.97787 0.94900 0.84990 0.85854 1.22771 0.92465 0.96093 1.03134 1.25146 0.93778 0.96770 0.97200 1.19174 0.82756 0.78488 0.79916 1.90826 1.46409 1.66559 1.32314 1.86718 1.44003 1.43035 1.51782 1.22804 0.79962 0.91915 0.98550 1.22514 1.04627 1.01651 0.95217 1.21906 1.04429 0.96158 0.96867 1.22519 0.98186 1.00371 1.03023 1.78459 0.95858 1.05712 1.16987 1.91345 1.41659 1.55460 1.31866 0.92407 0.96966 0.90697 0.87934 0.95482 0.91530 0.84104 0.87409 0.91537 0.88112 0.91708 0.91392 0.87307 0.91224 0.91803 0.88043 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 9.70 71.98 0.70 -5.17 16 2 C 0.13 6.38 5.27 86.38 0.46 6.84 16 3 N -0.43 -20.94 2.64 -635.52 -1.68 -22.62 16 4 C -0.37 -16.66 8.96 84.04 0.75 -15.91 16 5 H 0.12 4.79 4.75 -2.91 -0.01 4.78 16 6 C 0.00 0.17 5.13 84.92 0.44 0.61 16 7 N -0.88 -40.94 8.11 21.66 0.18 -40.76 16 8 Si 0.99 35.50 29.58 68.60 2.03 37.53 16 9 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 10 H -0.28 -10.24 7.11 99.48 0.71 -9.54 16 11 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 12 C 0.44 21.62 6.94 87.66 0.61 22.23 16 13 O -0.63 -35.55 16.25 14.91 0.24 -35.30 16 14 C 0.05 2.06 3.23 30.44 0.10 2.16 16 15 H 0.12 4.69 7.93 -2.39 -0.02 4.67 16 16 C -0.11 -3.60 5.46 30.76 0.17 -3.44 16 17 C 0.06 2.10 7.30 45.72 0.33 2.43 16 18 C 0.56 15.91 7.27 70.26 0.51 16.42 16 19 O -0.48 -13.87 12.50 19.95 0.25 -13.62 16 20 O -0.34 -8.69 9.88 -56.65 -0.56 -9.25 16 21 C 0.10 1.87 1.13 -10.79 -0.01 1.86 16 22 C -0.18 -3.04 8.37 71.98 0.60 -2.44 16 23 C -0.14 -1.71 8.85 71.98 0.64 -1.07 16 24 C -0.18 -3.15 8.37 71.98 0.60 -2.55 16 25 N -0.23 -8.37 12.51 -42.37 -0.53 -8.90 16 26 O -0.18 -7.88 11.83 -20.34 -0.24 -8.12 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 3.61 6.26 -2.39 -0.01 3.60 16 30 H 0.10 5.03 5.76 -2.38 -0.01 5.02 16 31 H 0.03 1.33 7.56 -2.39 -0.02 1.31 16 32 H 0.27 12.17 8.31 -92.71 -0.77 11.40 16 33 H 0.14 4.21 6.76 -2.39 -0.02 4.19 16 34 H 0.11 3.83 7.91 -2.39 -0.02 3.81 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.37 5.88 -2.39 -0.01 1.35 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 42 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -61.20 350.87 6.61 -54.59 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 1.03 Total: 24.48 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 5.89 Total: 21.96 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -2.03 Total: -72.28 kcal Atomic # 8 Polarization: -65.98 SS G_CDS: -0.31 Total: -66.28 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.53 kcal Total: -61.20 6.61 -54.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281021929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.020 kcal (2) G-P(sol) polarization free energy of solvation -61.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds