Wall clock time and date at job start Fri Apr 10 2020 18:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47047 * 2 1 4 4 C 1.50699 * 109.47251 * 239.99704 * 2 1 3 5 5 H 1.08000 * 119.99594 * 335.26202 * 4 2 1 6 6 C 1.37878 * 120.00105 * 155.25916 * 4 2 1 7 7 N 1.31514 * 119.99797 * 355.15152 * 6 4 2 8 8 Si 1.86794 * 119.99706 * 175.15471 * 6 4 2 9 9 H 1.48493 * 109.47394 * 59.99885 * 8 6 4 10 10 H 1.48508 * 109.46735 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47376 * 299.99626 * 8 6 4 12 12 N 1.46506 * 109.46780 * 119.99551 * 2 1 3 13 13 C 1.34773 * 120.00375 * 274.99752 * 12 2 1 14 14 O 1.21283 * 119.99545 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00344 * 180.02562 * 13 12 2 16 16 H 1.09002 * 110.85589 * 52.65147 * 15 13 12 17 17 C 1.54741 * 110.97219 * 288.81573 * 15 13 12 18 18 C 1.51690 * 102.54723 * 217.66554 * 17 15 13 19 19 C 1.47470 * 125.86411 * 195.35085 * 18 17 15 20 20 O 1.21469 * 120.00207 * 0.02562 * 19 18 17 21 21 O 1.34760 * 119.99873 * 180.02562 * 19 18 17 22 22 C 1.45202 * 116.99928 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.46912 * 60.00050 * 22 21 19 24 24 C 1.52999 * 109.47223 * 179.97438 * 22 21 19 25 25 C 1.52992 * 109.47113 * 300.00134 * 22 21 19 26 26 N 1.29062 * 108.27140 * 15.38734 * 18 17 15 27 27 O 1.41392 * 112.87850 * 0.32153 * 26 18 17 28 28 H 1.09004 * 109.46882 * 55.02920 * 1 2 3 29 29 H 1.08991 * 109.47519 * 175.03602 * 1 2 3 30 30 H 1.09009 * 109.46836 * 295.03634 * 1 2 3 31 31 H 0.97004 * 120.00425 * 5.13116 * 7 6 4 32 32 H 0.96998 * 119.99321 * 95.00260 * 12 2 1 33 33 H 1.08999 * 110.79159 * 335.92573 * 17 15 13 34 34 H 1.08998 * 110.79670 * 99.40351 * 17 15 13 35 35 H 1.09000 * 109.47170 * 60.00154 * 23 22 21 36 36 H 1.09003 * 109.47263 * 180.02562 * 23 22 21 37 37 H 1.08999 * 109.47301 * 299.99948 * 23 22 21 38 38 H 1.09007 * 109.46562 * 60.00170 * 24 22 21 39 39 H 1.08991 * 109.46943 * 179.97438 * 24 22 21 40 40 H 1.08997 * 109.47234 * 300.00953 * 24 22 21 41 41 H 1.09005 * 109.47499 * 59.99776 * 25 22 21 42 42 H 1.09003 * 109.46939 * 179.97438 * 25 22 21 43 43 H 1.09003 * 109.47522 * 299.99813 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 1.4115 -1.4456 -1.7208 6 6 3.2846 -0.4219 -1.7301 7 7 4.0021 0.5396 -1.1913 8 14 3.9619 -1.3967 -3.1724 9 1 3.0629 -1.2373 -4.3435 10 1 5.3169 -0.8953 -3.5160 11 1 4.0449 -2.8329 -2.8040 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6498 -0.7284 3.5876 16 1 3.5906 -1.2396 3.3833 17 6 1.5886 -1.7154 4.1299 18 6 1.7450 -1.5747 5.6322 19 6 1.2131 -2.5033 6.6469 20 8 0.5864 -3.4852 6.3025 21 8 1.4224 -2.2624 7.9561 22 6 0.8705 -3.2191 8.8988 23 6 1.4715 -4.6010 8.6338 24 6 1.2080 -2.7819 10.3256 25 6 -0.6488 -3.2828 8.7302 26 7 2.4227 -0.5023 5.8698 27 8 2.7896 0.1884 4.6919 28 1 -0.3633 0.5890 -0.8422 29 1 -0.3634 -1.0237 -0.0889 30 1 -0.3633 0.4349 0.9312 31 1 3.6832 0.9958 -0.3968 32 1 2.2490 -1.6317 1.1527 33 1 0.5879 -1.4187 3.8156 34 1 1.8093 -2.7342 3.8117 35 1 2.5539 -4.5556 8.7539 36 1 1.0569 -5.3193 9.3411 37 1 1.2315 -4.9127 7.6172 38 1 0.7801 -1.7973 10.5147 39 1 0.7933 -3.4998 11.0332 40 1 2.2904 -2.7367 10.4454 41 1 -0.8888 -3.5945 7.7137 42 1 -1.0630 -4.0013 9.4376 43 1 -1.0769 -2.2983 8.9190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283188475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:20 Heat of formation + Delta-G solvation = -105.671715 kcal Electronic energy + Delta-G solvation = -26213.202827 eV Core-core repulsion = 22260.900443 eV Total energy + Delta-G solvation = -3952.302385 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36995 -40.43099 -38.44730 -37.40254 -35.06972 -34.59355 -33.17919 -32.45039 -31.22507 -29.22386 -27.81101 -27.80254 -25.58622 -24.89914 -24.49262 -21.50435 -21.40819 -19.85034 -19.60503 -18.02904 -17.74575 -17.08331 -16.78815 -16.41468 -16.06702 -15.31588 -15.09880 -14.74944 -14.65757 -14.03586 -13.94374 -13.87107 -13.62823 -13.41671 -13.16677 -12.90865 -12.72026 -12.50395 -12.40595 -12.32853 -12.19893 -11.88142 -11.76079 -11.74971 -11.39653 -11.21084 -11.08361 -10.93992 -10.82867 -10.60316 -10.30170 -10.13915 -10.03690 -9.31067 -8.89210 -8.56730 -8.02903 -6.62912 -4.45225 0.46727 1.78325 2.36889 2.66314 3.11583 3.29687 3.31835 3.51527 3.73663 3.96296 4.18394 4.27189 4.31969 4.33088 4.34364 4.47360 4.78633 4.93192 5.08921 5.10775 5.13650 5.26110 5.30498 5.35222 5.41900 5.42660 5.44485 5.54608 5.61551 5.83801 5.85004 5.96507 6.27726 6.42430 6.50739 6.70751 6.93888 7.13578 7.29004 7.48957 7.75065 8.16406 8.45503 8.62413 8.95052 9.35397 10.73498 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025050 B = 0.002720 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.488202 B =10292.633188 C =10489.283679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.234 3.766 3 H 0.056 0.944 4 C -0.608 4.608 5 H 0.058 0.942 6 C 0.030 3.970 7 N -0.885 5.885 8 Si 1.070 2.930 9 H -0.285 1.285 10 H -0.281 1.281 11 H -0.285 1.285 12 N -0.694 5.694 13 C 0.503 3.497 14 O -0.536 6.536 15 C 0.019 3.981 16 H 0.116 0.884 17 C -0.115 4.115 18 C 0.047 3.953 19 C 0.551 3.449 20 O -0.475 6.475 21 O -0.331 6.331 22 C 0.116 3.884 23 C -0.185 4.185 24 C -0.141 4.141 25 C -0.186 4.186 26 N -0.207 5.207 27 O -0.142 6.142 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.031 0.969 31 H 0.278 0.722 32 H 0.388 0.612 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 -11.634 19.190 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.646 4.646 5 H 0.077 0.923 6 C -0.179 4.179 7 N -0.518 5.518 8 Si 0.897 3.103 9 H -0.211 1.211 10 H -0.206 1.206 11 H -0.211 1.211 12 N -0.345 5.345 13 C 0.284 3.716 14 O -0.414 6.414 15 C -0.043 4.043 16 H 0.134 0.866 17 C -0.155 4.155 18 C -0.145 4.145 19 C 0.392 3.608 20 O -0.359 6.359 21 O -0.247 6.247 22 C 0.080 3.920 23 C -0.242 4.242 24 C -0.198 4.198 25 C -0.243 4.243 26 N 0.051 4.949 27 O -0.167 6.167 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.221 0.779 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.988 -10.376 18.889 21.917 hybrid contribution -1.437 -0.970 0.451 1.791 sum -5.425 -11.346 19.340 23.069 Atomic orbital electron populations 1.21995 0.98227 1.00092 0.99565 1.18964 0.90134 0.95130 0.82224 0.92612 1.22114 1.03993 1.27443 1.11065 0.92328 1.26081 0.93965 0.95771 1.02097 1.70760 1.40961 1.18886 1.21168 0.83526 0.76529 0.75297 0.74928 1.21100 1.20611 1.21124 1.47829 1.63952 1.13701 1.09038 1.19948 0.79705 0.87818 0.84081 1.90697 1.50553 1.15453 1.84662 1.23995 0.99874 0.90643 0.89833 0.86606 1.22761 1.02447 1.03041 0.87223 1.24802 0.98551 0.95813 0.95338 1.19408 0.76982 0.82723 0.81704 1.90823 1.36401 1.26684 1.82016 1.86719 1.71153 1.51745 1.15106 1.22364 0.93900 0.87809 0.87903 1.22524 1.01539 0.95299 1.04874 1.21862 1.03230 1.02798 0.91910 1.22524 0.93540 1.03215 1.04997 1.78522 1.03984 1.03284 1.09096 1.91447 1.84313 1.30720 1.10170 0.92813 0.93957 0.94970 0.91003 0.77866 0.86663 0.86097 0.91649 0.90592 0.89734 0.91177 0.90000 0.91183 0.89732 0.90589 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.46 37.16 0.35 -2.60 16 2 C 0.23 5.60 2.28 -69.08 -0.16 5.45 16 3 H 0.06 1.55 6.11 -51.93 -0.32 1.23 16 4 C -0.61 -15.42 8.50 -34.44 -0.29 -15.72 16 5 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 6 C 0.03 0.80 5.45 -17.82 -0.10 0.70 16 7 N -0.88 -25.35 13.63 55.43 0.76 -24.59 16 8 Si 1.07 23.03 29.91 -169.99 -5.08 17.95 16 9 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 12 N -0.69 -14.27 5.07 -54.93 -0.28 -14.55 16 13 C 0.50 10.34 7.10 -10.99 -0.08 10.26 16 14 O -0.54 -13.35 16.25 -13.28 -0.22 -13.57 16 15 C 0.02 0.30 4.23 -26.97 -0.11 0.19 16 16 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 17 C -0.12 -1.49 6.44 -26.48 -0.17 -1.66 16 18 C 0.05 0.64 7.30 -79.51 -0.58 0.06 16 19 C 0.55 6.81 7.27 34.49 0.25 7.06 16 20 O -0.48 -5.98 12.50 -19.24 -0.24 -6.22 16 21 O -0.33 -3.83 9.88 -40.66 -0.40 -4.23 16 22 C 0.12 1.00 1.13 -90.62 -0.10 0.90 16 23 C -0.19 -1.45 8.37 37.16 0.31 -1.14 16 24 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 25 C -0.19 -1.50 8.37 37.15 0.31 -1.18 16 26 N -0.21 -3.29 12.51 35.26 0.44 -2.85 16 27 O -0.14 -2.61 11.83 -30.20 -0.36 -2.97 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.28 8.21 6.66 -40.82 -0.27 7.94 16 32 H 0.39 7.00 8.59 -40.82 -0.35 6.65 16 33 H 0.12 1.51 7.90 -51.93 -0.41 1.10 16 34 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.80 5.88 -51.93 -0.31 0.50 16 38 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.83 5.88 -51.93 -0.31 0.52 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -31.80 364.20 -6.17 -37.97 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.24 Total: 5.82 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.04 Total: 1.75 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.92 Total: -41.99 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -1.22 Total: -26.99 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.08 Total: 17.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.80 -6.17 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283188475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.704 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds