Wall clock time and date at job start Fri Apr 10 2020 18:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47047 * 2 1 4 4 C 1.50699 * 109.47251 * 239.99704 * 2 1 3 5 5 H 1.08000 * 119.99594 * 335.26202 * 4 2 1 6 6 C 1.37878 * 120.00105 * 155.25916 * 4 2 1 7 7 N 1.31514 * 119.99797 * 355.15152 * 6 4 2 8 8 Si 1.86794 * 119.99706 * 175.15471 * 6 4 2 9 9 H 1.48493 * 109.47394 * 59.99885 * 8 6 4 10 10 H 1.48508 * 109.46735 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47376 * 299.99626 * 8 6 4 12 12 N 1.46506 * 109.46780 * 119.99551 * 2 1 3 13 13 C 1.34773 * 120.00375 * 274.99752 * 12 2 1 14 14 O 1.21283 * 119.99545 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00344 * 180.02562 * 13 12 2 16 16 H 1.09002 * 110.85589 * 52.65147 * 15 13 12 17 17 C 1.54741 * 110.97219 * 288.81573 * 15 13 12 18 18 C 1.51690 * 102.54723 * 217.66554 * 17 15 13 19 19 C 1.47470 * 125.86411 * 195.35085 * 18 17 15 20 20 O 1.21469 * 120.00207 * 0.02562 * 19 18 17 21 21 O 1.34760 * 119.99873 * 180.02562 * 19 18 17 22 22 C 1.45202 * 116.99928 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.46912 * 60.00050 * 22 21 19 24 24 C 1.52999 * 109.47223 * 179.97438 * 22 21 19 25 25 C 1.52992 * 109.47113 * 300.00134 * 22 21 19 26 26 N 1.29062 * 108.27140 * 15.38734 * 18 17 15 27 27 O 1.41392 * 112.87850 * 0.32153 * 26 18 17 28 28 H 1.09004 * 109.46882 * 55.02920 * 1 2 3 29 29 H 1.08991 * 109.47519 * 175.03602 * 1 2 3 30 30 H 1.09009 * 109.46836 * 295.03634 * 1 2 3 31 31 H 0.97004 * 120.00425 * 5.13116 * 7 6 4 32 32 H 0.96998 * 119.99321 * 95.00260 * 12 2 1 33 33 H 1.08999 * 110.79159 * 335.92573 * 17 15 13 34 34 H 1.08998 * 110.79670 * 99.40351 * 17 15 13 35 35 H 1.09000 * 109.47170 * 60.00154 * 23 22 21 36 36 H 1.09003 * 109.47263 * 180.02562 * 23 22 21 37 37 H 1.08999 * 109.47301 * 299.99948 * 23 22 21 38 38 H 1.09007 * 109.46562 * 60.00170 * 24 22 21 39 39 H 1.08991 * 109.46943 * 179.97438 * 24 22 21 40 40 H 1.08997 * 109.47234 * 300.00953 * 24 22 21 41 41 H 1.09005 * 109.47499 * 59.99776 * 25 22 21 42 42 H 1.09003 * 109.46939 * 179.97438 * 25 22 21 43 43 H 1.09003 * 109.47522 * 299.99813 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 1.4115 -1.4456 -1.7208 6 6 3.2846 -0.4219 -1.7301 7 7 4.0021 0.5396 -1.1913 8 14 3.9619 -1.3967 -3.1724 9 1 3.0629 -1.2373 -4.3435 10 1 5.3169 -0.8953 -3.5160 11 1 4.0449 -2.8329 -2.8040 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8582 1.1585 2.4117 15 6 2.6498 -0.7284 3.5876 16 1 3.5906 -1.2396 3.3833 17 6 1.5886 -1.7154 4.1299 18 6 1.7450 -1.5747 5.6322 19 6 1.2131 -2.5033 6.6469 20 8 0.5864 -3.4852 6.3025 21 8 1.4224 -2.2624 7.9561 22 6 0.8705 -3.2191 8.8988 23 6 1.4715 -4.6010 8.6338 24 6 1.2080 -2.7819 10.3256 25 6 -0.6488 -3.2828 8.7302 26 7 2.4227 -0.5023 5.8698 27 8 2.7896 0.1884 4.6919 28 1 -0.3633 0.5890 -0.8422 29 1 -0.3634 -1.0237 -0.0889 30 1 -0.3633 0.4349 0.9312 31 1 3.6832 0.9958 -0.3968 32 1 2.2490 -1.6317 1.1527 33 1 0.5879 -1.4187 3.8156 34 1 1.8093 -2.7342 3.8117 35 1 2.5539 -4.5556 8.7539 36 1 1.0569 -5.3193 9.3411 37 1 1.2315 -4.9127 7.6172 38 1 0.7801 -1.7973 10.5147 39 1 0.7933 -3.4998 11.0332 40 1 2.2904 -2.7367 10.4454 41 1 -0.8888 -3.5945 7.7137 42 1 -1.0630 -4.0013 9.4376 43 1 -1.0769 -2.2983 8.9190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283188475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:19 Heat of formation + Delta-G solvation = -126.317090 kcal Electronic energy + Delta-G solvation = -26214.098078 eV Core-core repulsion = 22260.900443 eV Total energy + Delta-G solvation = -3953.197635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.37995 -41.63444 -40.07157 -38.28113 -36.93662 -35.40540 -34.41248 -34.22264 -32.71232 -30.86050 -28.40266 -28.34015 -26.82806 -26.60676 -25.89073 -23.22852 -22.29582 -21.44975 -20.64220 -19.62446 -18.95711 -18.41169 -17.93953 -17.40078 -17.14930 -16.75913 -16.55047 -15.92546 -15.62925 -15.60092 -15.45077 -15.12881 -14.91817 -14.68228 -14.47632 -14.03515 -13.81694 -13.50752 -13.26325 -13.13519 -13.06920 -13.01050 -12.95090 -12.90511 -12.62728 -12.55157 -12.52178 -12.37286 -12.11444 -11.89220 -11.53262 -11.45128 -11.40326 -11.05447 -10.65394 -10.55837 -9.83176 -8.71349 -6.54339 -0.61180 0.77387 1.35205 1.42346 1.52772 1.59098 1.65057 1.84303 2.35245 2.55945 2.83016 3.05451 3.06203 3.22953 3.63049 3.64308 3.73305 3.84697 3.88421 3.91694 4.30874 4.39760 4.48356 4.51860 4.59961 4.68818 4.69076 4.71979 4.74519 4.83941 4.84974 5.06075 5.13797 5.16327 5.23996 5.28450 5.29995 5.52220 5.69040 5.85759 6.10223 6.35869 6.42837 6.79600 7.31271 7.35610 8.63687 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.025050 B = 0.002720 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.488202 B =10292.633188 C =10489.283679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.234 3.766 3 H 0.007 0.993 4 C -0.609 4.609 5 H 0.069 0.931 6 C -0.017 4.017 7 N -0.920 5.920 8 Si 1.119 2.881 9 H -0.271 1.271 10 H -0.293 1.293 11 H -0.258 1.258 12 N -0.686 5.686 13 C 0.502 3.498 14 O -0.587 6.587 15 C 0.026 3.974 16 H 0.142 0.858 17 C -0.109 4.109 18 C 0.069 3.931 19 C 0.554 3.446 20 O -0.474 6.474 21 O -0.341 6.341 22 C 0.104 3.896 23 C -0.182 4.182 24 C -0.139 4.139 25 C -0.184 4.184 26 N -0.227 5.227 27 O -0.182 6.182 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.258 0.742 32 H 0.404 0.596 33 H 0.117 0.883 34 H 0.160 0.840 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 -14.850 20.161 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.134 3.866 3 H 0.025 0.975 4 C -0.648 4.648 5 H 0.087 0.913 6 C -0.219 4.219 7 N -0.555 5.555 8 Si 0.940 3.060 9 H -0.196 1.196 10 H -0.219 1.219 11 H -0.183 1.183 12 N -0.337 5.337 13 C 0.285 3.715 14 O -0.468 6.468 15 C -0.036 4.036 16 H 0.159 0.841 17 C -0.148 4.148 18 C -0.125 4.125 19 C 0.395 3.605 20 O -0.358 6.358 21 O -0.258 6.258 22 C 0.069 3.931 23 C -0.239 4.239 24 C -0.195 4.195 25 C -0.241 4.241 26 N 0.028 4.972 27 O -0.203 6.203 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.240 0.760 33 H 0.135 0.865 34 H 0.177 0.823 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.765 -13.624 19.868 24.557 hybrid contribution -1.319 -0.011 0.283 1.349 sum -6.084 -13.636 20.150 25.080 Atomic orbital electron populations 1.21879 0.95999 1.01478 0.99540 1.18742 0.91841 0.92807 0.83250 0.97492 1.22363 1.03877 1.26997 1.11525 0.91325 1.27504 0.94668 0.95636 1.04132 1.70909 1.41998 1.21053 1.21558 0.82915 0.75392 0.75252 0.72457 1.19596 1.21888 1.18296 1.47256 1.63769 1.14262 1.08453 1.20537 0.78512 0.87225 0.85190 1.90671 1.52592 1.17852 1.85653 1.23896 1.01803 0.90426 0.87497 0.84063 1.22825 1.01403 1.04054 0.86502 1.25136 0.96452 0.94717 0.96151 1.19194 0.76987 0.82346 0.81992 1.90837 1.36314 1.26526 1.82171 1.86723 1.71271 1.52913 1.14851 1.22788 0.94254 0.87830 0.88229 1.22509 1.01722 0.95224 1.04482 1.21915 1.03388 1.03411 0.90820 1.22517 0.93253 1.03753 1.04549 1.78575 1.06383 1.04501 1.07701 1.91431 1.85056 1.32505 1.11318 0.92861 0.91669 0.95086 0.93186 0.76003 0.86488 0.82271 0.91560 0.88233 0.91443 0.91498 0.87368 0.91255 0.91552 0.88146 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 9.46 71.98 0.68 -4.75 16 2 C 0.23 11.36 2.28 44.24 0.10 11.46 16 3 H 0.01 0.41 6.11 -2.38 -0.01 0.40 16 4 C -0.61 -30.63 8.50 25.60 0.22 -30.42 16 5 H 0.07 3.28 7.81 -2.91 -0.02 3.25 16 6 C -0.02 -0.91 5.45 84.65 0.46 -0.45 16 7 N -0.92 -54.23 13.63 21.45 0.29 -53.94 16 8 Si 1.12 45.48 29.91 68.60 2.05 47.53 16 9 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 12 N -0.69 -28.13 5.07 -446.08 -2.26 -30.39 16 13 C 0.50 20.90 7.10 87.66 0.62 21.52 16 14 O -0.59 -30.51 16.25 14.97 0.24 -30.26 16 15 C 0.03 0.81 4.23 30.44 0.13 0.94 16 16 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 17 C -0.11 -2.59 6.44 30.76 0.20 -2.39 16 18 C 0.07 1.77 7.30 45.72 0.33 2.10 16 19 C 0.55 12.79 7.27 70.26 0.51 13.30 16 20 O -0.47 -10.98 12.50 19.93 0.25 -10.73 16 21 O -0.34 -7.41 9.88 -56.70 -0.56 -7.97 16 22 C 0.10 1.57 1.13 -10.80 -0.01 1.55 16 23 C -0.18 -2.41 8.37 71.98 0.60 -1.81 16 24 C -0.14 -1.42 8.85 71.98 0.64 -0.78 16 25 C -0.18 -2.57 8.37 71.98 0.60 -1.97 16 26 N -0.23 -7.14 12.51 -42.36 -0.53 -7.67 16 27 O -0.18 -6.78 11.83 -20.31 -0.24 -7.02 16 28 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.26 15.99 6.66 -92.71 -0.62 15.38 16 32 H 0.40 14.00 8.59 -92.71 -0.80 13.21 16 33 H 0.12 2.84 7.90 -2.39 -0.02 2.82 16 34 H 0.16 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 1.14 5.88 -2.39 -0.01 1.13 16 38 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 1.19 5.88 -2.38 -0.01 1.18 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -72.06 364.20 4.72 -67.34 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.39 Total: 24.79 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.09 Total: 8.32 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -2.50 Total: -92.00 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -0.31 Total: -55.99 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.05 Total: 47.53 kcal Total: -72.06 4.72 -67.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283188475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.978 kcal (2) G-P(sol) polarization free energy of solvation -72.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds