Wall clock time and date at job start Fri Apr 10 2020 18:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46818 * 2 1 4 4 C 1.50697 * 109.47715 * 120.00158 * 2 1 3 5 5 H 1.08004 * 119.99966 * 25.53606 * 4 2 1 6 6 C 1.37875 * 119.99947 * 205.54597 * 4 2 1 7 7 N 1.31512 * 120.00191 * 353.29505 * 6 4 2 8 8 Si 1.86806 * 119.99860 * 173.29676 * 6 4 2 9 9 H 1.48504 * 109.47112 * 59.99399 * 8 6 4 10 10 H 1.48500 * 109.47073 * 299.99799 * 8 6 4 11 11 H 1.48499 * 109.47099 * 179.97438 * 8 6 4 12 12 N 1.46502 * 109.47006 * 240.00105 * 2 1 3 13 13 C 1.34785 * 119.99890 * 84.99473 * 12 2 1 14 14 O 1.21277 * 119.99799 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99892 * 179.97438 * 13 12 2 16 16 H 1.09010 * 110.85929 * 52.65702 * 15 13 12 17 17 C 1.54736 * 110.97489 * 288.81496 * 15 13 12 18 18 C 1.51687 * 102.54997 * 217.66601 * 17 15 13 19 19 C 1.47473 * 125.86980 * 195.35442 * 18 17 15 20 20 O 1.21471 * 119.99305 * 0.02562 * 19 18 17 21 21 O 1.34753 * 120.00444 * 180.02562 * 19 18 17 22 22 C 1.45192 * 117.00088 * 179.97438 * 21 19 18 23 23 C 1.53007 * 109.47042 * 60.00448 * 22 21 19 24 24 C 1.52999 * 109.47006 * 179.97438 * 22 21 19 25 25 C 1.52994 * 109.47225 * 300.00228 * 22 21 19 26 26 N 1.29058 * 108.26930 * 15.38957 * 18 17 15 27 27 O 1.41391 * 112.88250 * 0.31999 * 26 18 17 28 28 H 1.09006 * 109.46998 * 175.77447 * 1 2 3 29 29 H 1.09002 * 109.47033 * 295.76879 * 1 2 3 30 30 H 1.09002 * 109.47595 * 55.77237 * 1 2 3 31 31 H 0.96993 * 119.99808 * 354.60159 * 7 6 4 32 32 H 0.96993 * 120.00399 * 264.99755 * 12 2 1 33 33 H 1.08994 * 110.79561 * 335.93353 * 17 15 13 34 34 H 1.09007 * 110.79059 * 99.40692 * 17 15 13 35 35 H 1.08991 * 109.47205 * 59.99492 * 23 22 21 36 36 H 1.08997 * 109.46871 * 180.02562 * 23 22 21 37 37 H 1.09005 * 109.46608 * 299.99376 * 23 22 21 38 38 H 1.08998 * 109.46913 * 60.00547 * 24 22 21 39 39 H 1.09006 * 109.47143 * 180.02562 * 24 22 21 40 40 H 1.08997 * 109.47335 * 299.99791 * 24 22 21 41 41 H 1.08996 * 109.47590 * 60.00072 * 25 22 21 42 42 H 1.09006 * 109.46846 * 179.97438 * 25 22 21 43 43 H 1.08998 * 109.47365 * 299.99864 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 1.4168 -1.4549 1.7134 6 6 3.2780 -0.4098 1.7396 7 7 4.0805 0.3972 1.0807 8 14 3.8255 -1.1491 3.3654 9 1 3.8290 -2.6303 3.2595 10 1 2.8887 -0.7319 4.4394 11 1 5.1944 -0.6732 3.6895 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8588 1.1586 -2.4115 15 6 2.6497 -0.7284 -3.5876 16 1 2.0697 -1.6314 -3.7788 17 6 4.1573 -1.0538 -3.4620 18 6 4.6629 -0.8233 -4.8735 19 6 5.9562 -1.2818 -5.4137 20 8 6.7229 -1.9049 -4.7070 21 8 6.2874 -1.0097 -6.6913 22 6 7.5761 -1.4914 -7.1551 23 6 7.6245 -3.0159 -7.0338 24 6 7.7740 -1.0903 -8.6183 25 6 8.6875 -0.8764 -6.3024 26 7 3.7671 -0.1562 -5.5202 27 8 2.6329 0.1480 -4.7326 28 1 -0.3633 -1.0249 -0.0757 29 1 -0.3633 0.4468 0.9255 30 1 -0.3634 0.5780 -0.8497 31 1 3.8294 0.7188 0.2008 32 1 2.2490 -1.6317 -1.1527 33 1 4.6427 -0.3746 -2.7613 34 1 4.3056 -2.0914 -3.1626 35 1 6.8327 -3.4540 -7.6412 36 1 8.5921 -3.3775 -7.3816 37 1 7.4834 -3.3020 -5.9914 38 1 7.7394 -0.0044 -8.7052 39 1 8.7413 -1.4524 -8.9667 40 1 6.9822 -1.5289 -9.2255 41 1 8.5464 -1.1625 -5.2601 42 1 9.6550 -1.2385 -6.6503 43 1 8.6531 0.2096 -6.3888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283188480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:26 Heat of formation + Delta-G solvation = -106.557548 kcal Electronic energy + Delta-G solvation = -26389.708072 eV Core-core repulsion = 22437.367275 eV Total energy + Delta-G solvation = -3952.340797 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.29135 -40.37530 -38.42979 -37.32000 -35.06406 -34.52308 -33.11994 -32.41196 -31.20860 -29.19186 -27.75085 -27.72331 -25.51075 -24.89674 -24.46197 -21.41874 -21.35779 -19.82321 -19.56108 -17.99857 -17.72393 -17.00453 -16.71179 -16.33066 -15.99472 -15.36847 -15.06674 -14.70368 -14.48671 -14.03105 -13.96123 -13.85189 -13.49811 -13.44752 -12.99491 -12.84636 -12.75248 -12.45723 -12.33101 -12.25737 -12.08101 -11.85239 -11.74566 -11.67524 -11.33568 -11.19368 -11.10189 -10.91097 -10.75227 -10.51802 -10.29645 -10.14825 -9.97742 -9.25219 -8.79737 -8.71574 -8.00869 -6.63490 -4.45957 0.54216 1.85607 2.45346 2.73262 3.11904 3.30326 3.33312 3.52224 3.78936 4.04702 4.25662 4.33216 4.34926 4.37710 4.40011 4.54296 4.83975 4.99400 5.10336 5.15014 5.20887 5.32446 5.36600 5.39589 5.48032 5.49736 5.59744 5.61078 5.67574 5.90371 5.94941 6.04244 6.27771 6.45985 6.52427 6.76201 6.95737 7.13066 7.37470 7.49179 7.76017 8.16939 8.44701 8.62105 8.95746 9.34249 10.72709 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.003308 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.156889 B = 8462.393635 C = 9696.133339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.236 3.764 3 H 0.055 0.945 4 C -0.607 4.607 5 H 0.058 0.942 6 C 0.031 3.969 7 N -0.884 5.884 8 Si 1.069 2.931 9 H -0.285 1.285 10 H -0.285 1.285 11 H -0.281 1.281 12 N -0.695 5.695 13 C 0.503 3.497 14 O -0.536 6.536 15 C 0.020 3.980 16 H 0.113 0.887 17 C -0.117 4.117 18 C 0.053 3.947 19 C 0.549 3.451 20 O -0.472 6.472 21 O -0.332 6.332 22 C 0.116 3.884 23 C -0.185 4.185 24 C -0.140 4.140 25 C -0.186 4.186 26 N -0.210 5.210 27 O -0.145 6.145 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.033 0.967 31 H 0.277 0.723 32 H 0.388 0.612 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.226 -8.058 -15.576 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.645 4.645 5 H 0.076 0.924 6 C -0.178 4.178 7 N -0.517 5.517 8 Si 0.896 3.104 9 H -0.212 1.212 10 H -0.211 1.211 11 H -0.206 1.206 12 N -0.346 5.346 13 C 0.284 3.716 14 O -0.414 6.414 15 C -0.042 4.042 16 H 0.131 0.869 17 C -0.156 4.156 18 C -0.140 4.140 19 C 0.390 3.610 20 O -0.355 6.355 21 O -0.248 6.248 22 C 0.080 3.920 23 C -0.242 4.242 24 C -0.197 4.197 25 C -0.244 4.244 26 N 0.047 4.953 27 O -0.170 6.170 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.222 0.778 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.143 -6.782 -15.290 18.604 hybrid contribution -0.927 -0.974 -0.397 1.402 sum 7.217 -7.757 -15.688 18.930 Atomic orbital electron populations 1.22007 0.98196 0.99804 1.00008 1.18999 0.90227 0.95082 0.81968 0.92749 1.22130 1.04676 1.26884 1.10834 0.92361 1.26060 0.93135 0.94707 1.03915 1.70759 1.38038 1.28531 1.14379 0.83546 0.76526 0.75769 0.74566 1.21162 1.21084 1.20617 1.47851 1.63916 1.13759 1.09079 1.19985 0.79759 0.87785 0.84077 1.90694 1.50650 1.15463 1.84581 1.23967 0.96413 0.95069 0.88794 0.86896 1.22780 0.92645 1.07197 0.93003 1.24829 0.93432 1.00095 0.95600 1.19407 0.83964 0.76856 0.80767 1.90840 1.49295 1.35984 1.59404 1.86707 1.38930 1.71935 1.27228 1.22356 0.79728 0.94629 0.95265 1.22523 1.03227 0.93577 1.04899 1.21858 1.02795 1.03038 0.92053 1.22529 0.97888 1.01570 1.02369 1.78512 0.94561 1.05238 1.16939 1.91419 1.35799 1.56556 1.33178 0.94097 0.92625 0.94789 0.91197 0.77836 0.86138 0.86122 0.91718 0.90610 0.89699 0.91178 0.90029 0.91256 0.89646 0.90603 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.46 37.16 0.35 -2.65 16 2 C 0.24 5.64 2.04 -69.08 -0.14 5.50 16 3 H 0.05 1.51 6.58 -51.93 -0.34 1.17 16 4 C -0.61 -15.33 8.50 -34.44 -0.29 -15.63 16 5 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 6 C 0.03 0.82 5.45 -17.82 -0.10 0.72 16 7 N -0.88 -24.90 13.56 55.43 0.75 -24.15 16 8 Si 1.07 23.01 29.91 -169.99 -5.08 17.93 16 9 H -0.29 -5.80 7.11 56.52 0.40 -5.40 16 10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.69 -14.31 5.01 -54.93 -0.28 -14.59 16 13 C 0.50 10.35 7.10 -10.98 -0.08 10.27 16 14 O -0.54 -13.39 16.25 -13.27 -0.22 -13.60 16 15 C 0.02 0.32 4.23 -26.97 -0.11 0.21 16 16 H 0.11 1.45 8.14 -51.92 -0.42 1.03 16 17 C -0.12 -1.71 6.44 -26.48 -0.17 -1.88 16 18 C 0.05 0.78 7.30 -79.51 -0.58 0.20 16 19 C 0.55 7.46 7.27 34.49 0.25 7.71 16 20 O -0.47 -6.69 12.50 -19.24 -0.24 -6.93 16 21 O -0.33 -4.12 9.88 -40.64 -0.40 -4.53 16 22 C 0.12 1.10 1.13 -90.62 -0.10 1.00 16 23 C -0.19 -1.59 8.37 37.16 0.31 -1.28 16 24 C -0.14 -0.98 8.85 37.16 0.33 -0.65 16 25 C -0.19 -1.73 8.37 37.15 0.31 -1.42 16 26 N -0.21 -3.45 12.51 35.26 0.44 -3.01 16 27 O -0.15 -2.68 11.83 -30.20 -0.36 -3.04 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.28 7.96 6.93 -40.82 -0.28 7.67 16 32 H 0.39 7.06 8.59 -40.82 -0.35 6.71 16 33 H 0.12 1.99 7.90 -51.93 -0.41 1.58 16 34 H 0.12 1.43 8.14 -51.92 -0.42 1.01 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.88 5.88 -51.93 -0.31 0.58 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.97 5.88 -51.93 -0.31 0.66 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -31.45 364.57 -6.19 -37.63 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.28 Total: 6.69 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.02 Total: 2.10 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.92 Total: -41.75 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.21 Total: -28.09 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.08 Total: 17.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.45 -6.19 -37.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283188480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.926 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds