Wall clock time and date at job start Fri Apr 10 2020 18:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46818 * 2 1 4 4 C 1.50697 * 109.47715 * 120.00158 * 2 1 3 5 5 H 1.08004 * 119.99966 * 25.53606 * 4 2 1 6 6 C 1.37875 * 119.99947 * 205.54597 * 4 2 1 7 7 N 1.31512 * 120.00191 * 353.29505 * 6 4 2 8 8 Si 1.86806 * 119.99860 * 173.29676 * 6 4 2 9 9 H 1.48504 * 109.47112 * 59.99399 * 8 6 4 10 10 H 1.48500 * 109.47073 * 299.99799 * 8 6 4 11 11 H 1.48499 * 109.47099 * 179.97438 * 8 6 4 12 12 N 1.46502 * 109.47006 * 240.00105 * 2 1 3 13 13 C 1.34785 * 119.99890 * 84.99473 * 12 2 1 14 14 O 1.21277 * 119.99799 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99892 * 179.97438 * 13 12 2 16 16 H 1.09010 * 110.85929 * 52.65702 * 15 13 12 17 17 C 1.54736 * 110.97489 * 288.81496 * 15 13 12 18 18 C 1.51687 * 102.54997 * 217.66601 * 17 15 13 19 19 C 1.47473 * 125.86980 * 195.35442 * 18 17 15 20 20 O 1.21471 * 119.99305 * 0.02562 * 19 18 17 21 21 O 1.34753 * 120.00444 * 180.02562 * 19 18 17 22 22 C 1.45192 * 117.00088 * 179.97438 * 21 19 18 23 23 C 1.53007 * 109.47042 * 60.00448 * 22 21 19 24 24 C 1.52999 * 109.47006 * 179.97438 * 22 21 19 25 25 C 1.52994 * 109.47225 * 300.00228 * 22 21 19 26 26 N 1.29058 * 108.26930 * 15.38957 * 18 17 15 27 27 O 1.41391 * 112.88250 * 0.31999 * 26 18 17 28 28 H 1.09006 * 109.46998 * 175.77447 * 1 2 3 29 29 H 1.09002 * 109.47033 * 295.76879 * 1 2 3 30 30 H 1.09002 * 109.47595 * 55.77237 * 1 2 3 31 31 H 0.96993 * 119.99808 * 354.60159 * 7 6 4 32 32 H 0.96993 * 120.00399 * 264.99755 * 12 2 1 33 33 H 1.08994 * 110.79561 * 335.93353 * 17 15 13 34 34 H 1.09007 * 110.79059 * 99.40692 * 17 15 13 35 35 H 1.08991 * 109.47205 * 59.99492 * 23 22 21 36 36 H 1.08997 * 109.46871 * 180.02562 * 23 22 21 37 37 H 1.09005 * 109.46608 * 299.99376 * 23 22 21 38 38 H 1.08998 * 109.46913 * 60.00547 * 24 22 21 39 39 H 1.09006 * 109.47143 * 180.02562 * 24 22 21 40 40 H 1.08997 * 109.47335 * 299.99791 * 24 22 21 41 41 H 1.08996 * 109.47590 * 60.00072 * 25 22 21 42 42 H 1.09006 * 109.46846 * 179.97438 * 25 22 21 43 43 H 1.08998 * 109.47365 * 299.99864 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 1 1.4168 -1.4549 1.7134 6 6 3.2780 -0.4098 1.7396 7 7 4.0805 0.3972 1.0807 8 14 3.8255 -1.1491 3.3654 9 1 3.8290 -2.6303 3.2595 10 1 2.8887 -0.7319 4.4394 11 1 5.1944 -0.6732 3.6895 12 7 2.0183 -0.6906 -1.1962 13 6 2.1469 -0.0182 -2.3572 14 8 1.8588 1.1586 -2.4115 15 6 2.6497 -0.7284 -3.5876 16 1 2.0697 -1.6314 -3.7788 17 6 4.1573 -1.0538 -3.4620 18 6 4.6629 -0.8233 -4.8735 19 6 5.9562 -1.2818 -5.4137 20 8 6.7229 -1.9049 -4.7070 21 8 6.2874 -1.0097 -6.6913 22 6 7.5761 -1.4914 -7.1551 23 6 7.6245 -3.0159 -7.0338 24 6 7.7740 -1.0903 -8.6183 25 6 8.6875 -0.8764 -6.3024 26 7 3.7671 -0.1562 -5.5202 27 8 2.6329 0.1480 -4.7326 28 1 -0.3633 -1.0249 -0.0757 29 1 -0.3633 0.4468 0.9255 30 1 -0.3634 0.5780 -0.8497 31 1 3.8294 0.7188 0.2008 32 1 2.2490 -1.6317 -1.1527 33 1 4.6427 -0.3746 -2.7613 34 1 4.3056 -2.0914 -3.1626 35 1 6.8327 -3.4540 -7.6412 36 1 8.5921 -3.3775 -7.3816 37 1 7.4834 -3.3020 -5.9914 38 1 7.7394 -0.0044 -8.7052 39 1 8.7413 -1.4524 -8.9667 40 1 6.9822 -1.5289 -9.2255 41 1 8.5464 -1.1625 -5.2601 42 1 9.6550 -1.2385 -6.6503 43 1 8.6531 0.2096 -6.3888 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283188480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:26 Heat of formation + Delta-G solvation = -126.760573 kcal Electronic energy + Delta-G solvation = -26390.584141 eV Core-core repulsion = 22437.367275 eV Total energy + Delta-G solvation = -3953.216866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39122 -41.64238 -40.07681 -38.29592 -36.93461 -35.41653 -34.39262 -34.21747 -32.74478 -30.85203 -28.41789 -28.34297 -26.81164 -26.62168 -25.93035 -23.16657 -22.31586 -21.46793 -20.65677 -19.65616 -18.95414 -18.37696 -17.94937 -17.41464 -17.13646 -16.93893 -16.47373 -15.82168 -15.69591 -15.57938 -15.37543 -15.35373 -14.84265 -14.68440 -14.39867 -14.14250 -13.75839 -13.52098 -13.31396 -13.16880 -13.02911 -13.01918 -12.95985 -12.92521 -12.60699 -12.56507 -12.53888 -12.39771 -12.11271 -11.89591 -11.54391 -11.45679 -11.41328 -10.96754 -10.72303 -10.57592 -9.82437 -8.70126 -6.53292 -0.63406 0.76872 1.33090 1.41626 1.52278 1.59383 1.65400 1.84529 2.36442 2.56095 2.82469 3.04763 3.06463 3.22468 3.61736 3.63473 3.72267 3.82423 3.86854 3.89056 4.29318 4.39504 4.47091 4.50587 4.58706 4.70169 4.71469 4.72185 4.73437 4.82642 4.84505 5.05210 5.13814 5.15502 5.22956 5.28382 5.29725 5.50557 5.68938 5.86906 6.12437 6.34788 6.43167 6.79609 7.30947 7.35574 8.65052 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.003308 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.156889 B = 8462.393635 C = 9696.133339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.237 3.763 3 H 0.006 0.994 4 C -0.610 4.610 5 H 0.067 0.933 6 C -0.015 4.015 7 N -0.917 5.917 8 Si 1.117 2.883 9 H -0.261 1.261 10 H -0.273 1.273 11 H -0.292 1.292 12 N -0.687 5.687 13 C 0.501 3.499 14 O -0.587 6.587 15 C 0.030 3.970 16 H 0.158 0.842 17 C -0.114 4.114 18 C 0.069 3.931 19 C 0.553 3.447 20 O -0.477 6.477 21 O -0.339 6.339 22 C 0.103 3.897 23 C -0.182 4.182 24 C -0.137 4.137 25 C -0.186 4.186 26 N -0.222 5.222 27 O -0.178 6.178 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.259 0.741 32 H 0.404 0.596 33 H 0.099 0.901 34 H 0.155 0.845 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.891 -10.608 -16.291 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.136 3.864 3 H 0.024 0.976 4 C -0.648 4.648 5 H 0.085 0.915 6 C -0.217 4.217 7 N -0.551 5.551 8 Si 0.938 3.062 9 H -0.185 1.185 10 H -0.198 1.198 11 H -0.218 1.218 12 N -0.338 5.338 13 C 0.285 3.715 14 O -0.468 6.468 15 C -0.032 4.032 16 H 0.175 0.825 17 C -0.153 4.153 18 C -0.124 4.124 19 C 0.393 3.607 20 O -0.361 6.361 21 O -0.255 6.255 22 C 0.069 3.931 23 C -0.239 4.239 24 C -0.194 4.194 25 C -0.243 4.243 26 N 0.034 4.966 27 O -0.199 6.199 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.240 0.760 33 H 0.117 0.883 34 H 0.173 0.827 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.778 -9.369 -16.023 20.531 hybrid contribution -1.088 -0.165 -0.250 1.128 sum 7.690 -9.533 -16.273 20.367 Atomic orbital electron populations 1.21896 0.96038 1.01141 0.99999 1.18776 0.91868 0.92751 0.82993 0.97612 1.22354 1.04531 1.26592 1.11313 0.91467 1.27412 0.93558 0.94282 1.06468 1.70892 1.39127 1.30934 1.14156 0.82936 0.75638 0.76439 0.71187 1.18514 1.19798 1.21793 1.47310 1.63684 1.14302 1.08511 1.20571 0.78625 0.87189 0.85164 1.90668 1.52730 1.17827 1.85543 1.23937 0.97787 0.95245 0.86205 0.82511 1.22795 0.91287 1.08665 0.92574 1.25057 0.93534 0.98461 0.95366 1.19225 0.83372 0.76786 0.81286 1.90851 1.49255 1.36274 1.59739 1.86711 1.40644 1.71912 1.26236 1.22797 0.78345 0.95388 0.96600 1.22505 1.04826 0.92791 1.03772 1.21909 1.04373 1.02964 0.90131 1.22529 0.99223 1.01442 1.01067 1.78550 0.94628 1.06579 1.16861 1.91401 1.36914 1.57842 1.33783 0.91847 0.92381 0.95217 0.93083 0.76043 0.88310 0.82683 0.91248 0.88200 0.91696 0.91516 0.87348 0.90992 0.91934 0.88031 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 9.46 71.98 0.68 -4.86 16 2 C 0.24 11.48 2.04 44.24 0.09 11.57 16 3 H 0.01 0.34 6.58 -2.39 -0.02 0.32 16 4 C -0.61 -30.54 8.50 25.60 0.22 -30.32 16 5 H 0.07 3.21 7.82 -2.91 -0.02 3.19 16 6 C -0.01 -0.76 5.45 84.65 0.46 -0.30 16 7 N -0.92 -52.91 13.56 21.45 0.29 -52.62 16 8 Si 1.12 45.54 29.91 68.60 2.05 47.59 16 9 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 10 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 N -0.69 -28.26 5.01 -446.10 -2.24 -30.49 16 13 C 0.50 20.88 7.10 87.65 0.62 21.51 16 14 O -0.59 -30.50 16.25 14.99 0.24 -30.25 16 15 C 0.03 0.94 4.23 30.44 0.13 1.07 16 16 H 0.16 3.59 8.14 -2.38 -0.02 3.57 16 17 C -0.11 -3.23 6.44 30.76 0.20 -3.04 16 18 C 0.07 1.98 7.30 45.72 0.33 2.31 16 19 C 0.55 14.55 7.27 70.26 0.51 15.06 16 20 O -0.48 -13.12 12.50 19.93 0.25 -12.87 16 21 O -0.34 -8.07 9.88 -56.64 -0.56 -8.63 16 22 C 0.10 1.78 1.13 -10.79 -0.01 1.77 16 23 C -0.18 -2.73 8.37 71.98 0.60 -2.13 16 24 C -0.14 -1.58 8.85 71.98 0.64 -0.94 16 25 C -0.19 -3.18 8.37 71.98 0.60 -2.57 16 26 N -0.22 -7.21 12.51 -42.36 -0.53 -7.74 16 27 O -0.18 -6.55 11.83 -20.31 -0.24 -6.79 16 28 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.26 15.58 6.93 -92.71 -0.64 14.94 16 32 H 0.40 14.16 8.59 -92.71 -0.80 13.36 16 33 H 0.10 3.32 7.90 -2.39 -0.02 3.30 16 34 H 0.16 3.31 8.14 -2.38 -0.02 3.29 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.26 5.88 -2.38 -0.01 1.25 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 1.38 5.88 -2.39 -0.01 1.36 16 42 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.83 364.57 4.71 -66.12 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.36 Total: 26.56 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 5.07 Total: 9.12 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -2.47 Total: -90.86 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -0.31 Total: -58.55 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.05 Total: 47.59 kcal Total: -70.83 4.71 -66.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283188480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.636 kcal (2) G-P(sol) polarization free energy of solvation -70.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds