Wall clock time and date at job start Fri Apr 10 2020 18:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.47048 * 2 1 4 4 C 1.34229 * 116.99827 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00387 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99850 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47270 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47234 * 179.97438 * 7 6 4 9 9 C 1.53001 * 110.53717 * 302.83157 * 8 7 6 10 10 N 1.47314 * 110.73067 * 65.74902 * 8 7 6 11 11 C 1.34524 * 106.61872 * 118.36669 * 10 8 7 12 12 O 1.21541 * 123.77203 * 180.21097 * 11 10 8 13 13 N 1.33787 * 112.45722 * 0.38486 * 11 10 8 14 14 C 1.46505 * 124.17896 * 179.86294 * 13 11 10 15 15 C 1.52997 * 109.47212 * 269.69956 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.34766 * 111.64454 * 359.59650 * 13 11 10 25 25 O 1.21235 * 127.15761 * 180.26908 * 24 13 11 26 26 H 1.09005 * 109.47565 * 300.00067 * 1 2 3 27 27 H 1.08999 * 109.47327 * 59.99613 * 1 2 3 28 28 H 1.08998 * 109.46943 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47333 * 240.00310 * 2 1 3 30 30 H 1.09001 * 109.46967 * 119.99713 * 2 1 3 31 31 H 1.09001 * 109.47461 * 59.99928 * 6 4 3 32 32 H 1.09002 * 109.47161 * 300.00582 * 6 4 3 33 33 H 1.08996 * 109.46927 * 59.99819 * 7 6 4 34 34 H 1.08997 * 109.47000 * 299.99852 * 7 6 4 35 35 H 1.09003 * 109.46854 * 297.87264 * 9 8 7 36 36 H 1.09000 * 109.46974 * 57.86366 * 9 8 7 37 37 H 1.08995 * 109.47244 * 177.87064 * 9 8 7 38 38 H 0.96997 * 126.69200 * 298.55918 * 10 8 7 39 39 H 1.09002 * 109.47068 * 29.70016 * 14 13 11 40 40 H 1.09001 * 109.47372 * 149.70103 * 14 13 11 41 41 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 6 5.4486 2.8574 0.0010 8 6 6.0333 4.2713 0.0010 9 6 5.5206 5.0642 -1.2028 10 7 5.7098 4.9694 1.2572 11 6 6.8822 5.2517 1.8535 12 8 6.9765 5.8266 2.9201 13 7 7.9328 4.8322 1.1392 14 6 9.3288 5.0090 1.5472 15 6 9.8569 6.3353 0.9967 16 6 11.2926 6.5175 1.4169 17 1 11.7799 5.7626 2.0162 18 6 11.9846 7.6474 1.0353 19 7 11.3914 8.5664 0.3050 20 14 13.7640 7.8736 1.5566 21 1 14.1944 6.7062 2.3673 22 1 14.6233 7.9818 0.3504 23 1 13.8890 9.1121 2.3661 24 6 7.5483 4.2218 0.0010 25 8 8.2650 3.7339 -0.8465 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5844 3.4694 0.8912 32 1 3.5850 3.4699 -0.8888 33 1 5.7845 2.3257 -0.8892 34 1 5.7846 2.3249 0.8907 35 1 5.8478 4.5799 -2.1229 36 1 4.4314 5.0986 -1.1780 37 1 5.9172 6.0787 -1.1653 38 1 4.8241 5.1814 1.5909 39 1 9.3911 5.0167 2.6354 40 1 9.9289 4.1881 1.1547 41 1 9.7946 6.3276 -0.0915 42 1 9.2569 7.1563 1.3891 43 1 11.8783 9.3611 0.0362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286429404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:30 Heat of formation + Delta-G solvation = -145.917899 kcal Electronic energy + Delta-G solvation = -26119.282243 eV Core-core repulsion = 22165.234653 eV Total energy + Delta-G solvation = -3954.047590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.00 seconds Orbital eigenvalues (eV) -42.32954 -40.81236 -38.30288 -37.38622 -36.62699 -35.35391 -33.57733 -32.64960 -32.05050 -29.99938 -29.89680 -26.53830 -25.45293 -24.02653 -23.17581 -22.24601 -21.37515 -20.43848 -19.85315 -18.18832 -17.68228 -17.20006 -16.79750 -16.70940 -16.08438 -15.78100 -15.55603 -15.22012 -14.81252 -14.47258 -14.28702 -13.92247 -13.87305 -13.52556 -13.30161 -13.13296 -12.95487 -12.61761 -12.41331 -12.36389 -12.33884 -12.01375 -11.89316 -11.56347 -11.42190 -10.97704 -10.94841 -10.85485 -10.81839 -10.46837 -10.15289 -10.08761 -9.77297 -9.46974 -9.23147 -8.89089 -8.39232 -6.03938 -4.07450 1.84195 1.85043 2.24241 2.56882 3.23576 3.31972 3.38024 3.39075 3.43736 3.93421 4.14678 4.39872 4.44882 4.46976 4.48530 4.52618 4.65305 4.76382 4.82054 4.97626 5.24580 5.31246 5.32872 5.35016 5.40465 5.46876 5.51356 5.51769 5.72141 5.89934 6.03423 6.07416 6.14431 6.31458 6.65419 6.87915 7.36093 7.37829 7.57564 7.68921 7.71690 7.93210 8.27926 8.43984 8.97822 9.56615 11.07821 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.035273 B = 0.002509 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.615038 B =11158.474331 C =11273.833473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.504 6.504 6 C -0.114 4.114 7 C -0.102 4.102 8 C 0.120 3.880 9 C -0.152 4.152 10 N -0.729 5.729 11 C 0.702 3.298 12 O -0.537 6.537 13 N -0.567 5.567 14 C 0.118 3.882 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.530 3.470 25 O -0.462 6.462 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.433 0.567 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.024 0.976 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.684 -13.808 -2.952 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.305 3.695 5 O -0.391 6.391 6 C -0.151 4.151 7 C -0.141 4.141 8 C 0.029 3.971 9 C -0.210 4.210 10 N -0.395 5.395 11 C 0.403 3.597 12 O -0.410 6.410 13 N -0.312 5.312 14 C -0.001 4.001 15 C -0.026 4.026 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.315 3.685 25 O -0.331 6.331 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.277 0.723 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.851 -13.911 -2.887 26.908 hybrid contribution 0.551 0.225 0.380 0.706 sum -22.300 -13.686 -2.507 26.285 Atomic orbital electron populations 1.21813 0.92509 1.03076 1.03604 1.23051 0.95435 0.80046 1.02755 1.86500 1.24546 1.32609 1.84070 1.23664 0.80595 0.92772 0.72442 1.90712 1.60339 1.43200 1.44814 1.21439 0.95833 0.91375 1.06480 1.21598 0.92654 0.93756 1.06090 1.21416 0.93898 0.94273 0.87491 1.22086 1.02071 1.01082 0.95786 1.45670 1.08025 1.63165 1.22654 1.15925 0.81042 0.79041 0.83655 1.91006 1.85160 1.44209 1.20644 1.46714 1.10165 1.53036 1.21249 1.22232 0.74193 1.02520 1.01109 1.19412 0.96375 0.90013 0.96753 1.21036 0.96146 1.05261 1.33497 0.92155 1.25005 0.98566 0.95781 0.94962 1.69984 1.36865 1.09547 1.36676 0.86437 0.84483 0.78153 0.78352 1.19582 1.20954 1.20939 1.20491 0.89552 0.77067 0.81412 1.90786 1.60755 1.42874 1.38708 0.91403 0.91404 0.90176 0.91109 0.91146 0.87374 0.86609 0.88177 0.89610 0.89644 0.90362 0.90613 0.72319 0.89624 0.89842 0.96037 0.95759 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 10.29 37.16 0.38 -0.26 16 2 C 0.06 0.40 6.19 37.16 0.23 0.63 16 3 O -0.36 -2.93 10.22 -39.25 -0.40 -3.33 16 4 C 0.46 4.18 7.96 36.01 0.29 4.47 16 5 O -0.50 -6.20 15.73 -18.75 -0.29 -6.50 16 6 C -0.11 -0.73 5.31 -27.88 -0.15 -0.88 16 7 C -0.10 -0.96 3.87 -26.73 -0.10 -1.06 16 8 C 0.12 1.35 1.01 -132.10 -0.13 1.22 16 9 C -0.15 -1.35 8.61 37.16 0.32 -1.03 16 10 N -0.73 -8.45 5.62 -52.94 -0.30 -8.75 16 11 C 0.70 12.21 8.62 -88.03 -0.76 11.45 16 12 O -0.54 -11.30 17.48 5.33 0.09 -11.21 16 13 N -0.57 -10.61 2.60 -120.73 -0.31 -10.92 16 14 C 0.12 2.56 5.64 -4.04 -0.02 2.54 16 15 C 0.01 0.33 5.30 -27.89 -0.15 0.18 16 16 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 20 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.53 8.84 6.98 -10.56 -0.07 8.77 16 25 O -0.46 -8.92 17.76 5.60 0.10 -8.82 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.47 8.13 -51.93 -0.42 0.04 16 30 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 31 H 0.11 0.50 7.41 -51.93 -0.38 0.12 16 32 H 0.12 0.48 6.42 -51.93 -0.33 0.15 16 33 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.09 0.92 8.10 -51.93 -0.42 0.49 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.42 6.37 -51.93 -0.33 0.09 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.43 3.53 8.41 -40.82 -0.34 3.19 16 39 H 0.09 1.84 7.85 -51.93 -0.41 1.43 16 40 H 0.08 1.75 8.00 -51.93 -0.42 1.33 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -36.61 367.88 -6.84 -43.45 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.40 Total: -2.40 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -0.58 Total: 12.44 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.12 Total: -46.04 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.50 Total: -29.86 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.61 -6.84 -43.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286429404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.468 kcal (2) G-P(sol) polarization free energy of solvation -36.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.00 seconds