Wall clock time and date at job start Fri Apr 10 2020 18:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.47048 * 2 1 4 4 C 1.34229 * 116.99827 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00387 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99850 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.47270 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47234 * 179.97438 * 7 6 4 9 9 C 1.53001 * 110.53717 * 302.83157 * 8 7 6 10 10 N 1.47314 * 110.73067 * 65.74902 * 8 7 6 11 11 C 1.34524 * 106.61872 * 118.36669 * 10 8 7 12 12 O 1.21541 * 123.77203 * 180.21097 * 11 10 8 13 13 N 1.33787 * 112.45722 * 0.38486 * 11 10 8 14 14 C 1.46505 * 124.17896 * 179.86294 * 13 11 10 15 15 C 1.52997 * 109.47212 * 269.69956 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46616 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47104 * 119.99966 * 20 18 16 23 23 H 1.48489 * 109.47200 * 240.00246 * 20 18 16 24 24 C 1.34766 * 111.64454 * 359.59650 * 13 11 10 25 25 O 1.21235 * 127.15761 * 180.26908 * 24 13 11 26 26 H 1.09005 * 109.47565 * 300.00067 * 1 2 3 27 27 H 1.08999 * 109.47327 * 59.99613 * 1 2 3 28 28 H 1.08998 * 109.46943 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47333 * 240.00310 * 2 1 3 30 30 H 1.09001 * 109.46967 * 119.99713 * 2 1 3 31 31 H 1.09001 * 109.47461 * 59.99928 * 6 4 3 32 32 H 1.09002 * 109.47161 * 300.00582 * 6 4 3 33 33 H 1.08996 * 109.46927 * 59.99819 * 7 6 4 34 34 H 1.08997 * 109.47000 * 299.99852 * 7 6 4 35 35 H 1.09003 * 109.46854 * 297.87264 * 9 8 7 36 36 H 1.09000 * 109.46974 * 57.86366 * 9 8 7 37 37 H 1.08995 * 109.47244 * 177.87064 * 9 8 7 38 38 H 0.96997 * 126.69200 * 298.55918 * 10 8 7 39 39 H 1.09002 * 109.47068 * 29.70016 * 14 13 11 40 40 H 1.09001 * 109.47372 * 149.70103 * 14 13 11 41 41 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0012 7 6 5.4486 2.8574 0.0010 8 6 6.0333 4.2713 0.0010 9 6 5.5206 5.0642 -1.2028 10 7 5.7098 4.9694 1.2572 11 6 6.8822 5.2517 1.8535 12 8 6.9765 5.8266 2.9201 13 7 7.9328 4.8322 1.1392 14 6 9.3288 5.0090 1.5472 15 6 9.8569 6.3353 0.9967 16 6 11.2926 6.5175 1.4169 17 1 11.7799 5.7626 2.0162 18 6 11.9846 7.6474 1.0353 19 7 11.3914 8.5664 0.3050 20 14 13.7640 7.8736 1.5566 21 1 14.1944 6.7062 2.3673 22 1 14.6233 7.9818 0.3504 23 1 13.8890 9.1121 2.3661 24 6 7.5483 4.2218 0.0010 25 8 8.2650 3.7339 -0.8465 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5844 3.4694 0.8912 32 1 3.5850 3.4699 -0.8888 33 1 5.7845 2.3257 -0.8892 34 1 5.7846 2.3249 0.8907 35 1 5.8478 4.5799 -2.1229 36 1 4.4314 5.0986 -1.1780 37 1 5.9172 6.0787 -1.1653 38 1 4.8241 5.1814 1.5909 39 1 9.3911 5.0167 2.6354 40 1 9.9289 4.1881 1.1547 41 1 9.7946 6.3276 -0.0915 42 1 9.2569 7.1563 1.3891 43 1 11.8783 9.3611 0.0362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286429404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:28 Heat of formation + Delta-G solvation = -171.746763 kcal Electronic energy + Delta-G solvation = -26120.402266 eV Core-core repulsion = 22165.234653 eV Total energy + Delta-G solvation = -3955.167614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.63443 -41.50937 -39.73379 -38.31651 -37.58687 -36.94347 -35.32819 -33.96499 -32.60894 -31.77938 -30.79603 -27.64778 -27.01784 -25.15060 -24.11108 -23.79436 -22.43952 -21.41617 -21.20309 -19.12021 -18.87976 -18.61378 -17.83574 -17.65689 -17.55351 -16.99515 -16.68099 -16.53959 -16.35760 -15.92222 -15.29047 -15.17489 -14.93776 -14.70034 -14.40829 -14.23370 -14.05108 -13.66028 -13.60226 -13.35605 -13.13447 -12.91752 -12.89270 -12.75460 -12.69113 -12.46154 -12.16585 -12.10568 -12.07990 -11.90918 -11.54606 -11.50016 -11.42199 -11.12798 -10.76254 -10.63487 -10.47409 -8.26629 -6.39405 0.52913 1.16336 1.21329 1.40234 1.40829 1.54698 1.66684 1.96364 2.12821 2.39003 2.80713 3.07581 3.33722 3.60407 3.70909 3.98683 4.01937 4.05822 4.09490 4.11705 4.37885 4.39353 4.41354 4.47313 4.54763 4.69320 4.70738 4.77821 4.79335 4.89411 4.95476 4.99596 5.17635 5.21488 5.33966 5.40755 5.50277 5.70517 5.81039 6.06357 6.10616 6.36261 6.72448 6.74555 7.11171 7.30253 8.86400 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.035273 B = 0.002509 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.615038 B =11158.474331 C =11273.833473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.544 6.544 6 C -0.107 4.107 7 C -0.095 4.095 8 C 0.139 3.861 9 C -0.152 4.152 10 N -0.696 5.696 11 C 0.698 3.302 12 O -0.579 6.579 13 N -0.581 5.581 14 C 0.132 3.868 15 C 0.026 3.974 16 C -0.545 4.545 17 H 0.070 0.930 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.975 3.025 21 H -0.258 1.258 22 H -0.276 1.276 23 H -0.277 1.277 24 C 0.517 3.483 25 O -0.494 6.494 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.056 0.944 38 H 0.454 0.546 39 H 0.086 0.914 40 H 0.088 0.912 41 H -0.008 1.008 42 H -0.009 1.009 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.464 -14.231 -3.134 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.308 3.692 5 O -0.434 6.434 6 C -0.143 4.143 7 C -0.134 4.134 8 C 0.049 3.951 9 C -0.210 4.210 10 N -0.363 5.363 11 C 0.399 3.601 12 O -0.456 6.456 13 N -0.326 5.326 14 C 0.011 3.989 15 C -0.012 4.012 16 C -0.583 4.583 17 H 0.088 0.912 18 C -0.199 4.199 19 N -0.571 5.571 20 Si 0.798 3.202 21 H -0.182 1.182 22 H -0.202 1.202 23 H -0.203 1.203 24 C 0.305 3.695 25 O -0.366 6.366 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.169 0.831 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.146 0.854 37 H 0.075 0.925 38 H 0.303 0.697 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.724 -14.351 -3.088 28.753 hybrid contribution 1.045 0.316 0.387 1.158 sum -23.679 -14.035 -2.701 27.658 Atomic orbital electron populations 1.21820 0.90506 1.04229 1.03844 1.23255 0.97019 0.79421 1.02401 1.86503 1.23991 1.33400 1.83639 1.24114 0.80622 0.93231 0.71185 1.90709 1.61183 1.44695 1.46858 1.21505 0.92999 0.90425 1.09419 1.21502 0.95018 0.91529 1.05346 1.21460 0.89526 0.96049 0.88109 1.22212 1.05080 0.99332 0.94335 1.45476 1.07236 1.61573 1.21983 1.16065 0.82061 0.78775 0.83226 1.90975 1.85875 1.46226 1.22479 1.46719 1.09477 1.53830 1.22526 1.21745 0.76429 0.99867 1.00821 1.19165 0.95847 0.91541 0.94676 1.21494 0.97179 1.05851 1.33785 0.91191 1.26049 1.03751 0.95319 0.94742 1.70118 1.39024 1.10196 1.37741 0.85253 0.78148 0.78535 0.78228 1.18210 1.20187 1.20258 1.21495 0.92213 0.75736 0.80071 1.90757 1.62354 1.44012 1.39427 0.91220 0.91022 0.88622 0.91403 0.91708 0.84701 0.83149 0.88555 0.91085 0.89013 0.85382 0.92459 0.69744 0.89556 0.89351 0.99006 0.99076 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 71.98 0.74 -0.18 16 2 C 0.05 0.62 6.19 71.98 0.45 1.07 16 3 O -0.36 -4.98 10.22 -51.40 -0.53 -5.51 16 4 C 0.46 7.32 7.96 71.24 0.57 7.88 16 5 O -0.54 -12.92 15.73 21.96 0.35 -12.58 16 6 C -0.11 -0.95 5.31 29.85 0.16 -0.79 16 7 C -0.10 -1.57 3.87 30.59 0.12 -1.45 16 8 C 0.14 2.86 1.01 2.98 0.00 2.86 16 9 C -0.15 -2.24 8.61 71.98 0.62 -1.62 16 10 N -0.70 -14.73 5.62 -439.83 -2.47 -17.21 16 11 C 0.70 24.30 8.62 179.44 1.55 25.84 16 12 O -0.58 -24.77 17.48 -3.84 -0.07 -24.84 16 13 N -0.58 -22.31 2.60 -773.13 -2.01 -24.32 16 14 C 0.13 5.96 5.64 86.38 0.49 6.45 16 15 C 0.03 1.43 5.30 29.85 0.16 1.59 16 16 C -0.54 -31.91 9.11 25.60 0.23 -31.67 16 17 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 19 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 20 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.52 17.41 6.98 87.94 0.61 18.03 16 25 O -0.49 -19.56 17.76 -2.89 -0.05 -19.61 16 26 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 31 H 0.14 0.56 7.41 -2.39 -0.02 0.54 16 32 H 0.15 0.37 6.42 -2.39 -0.02 0.36 16 33 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 34 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.13 0.64 6.37 -2.39 -0.02 0.63 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.45 5.84 8.41 -92.71 -0.78 5.06 16 39 H 0.09 3.84 7.85 -2.39 -0.02 3.82 16 40 H 0.09 3.85 8.00 -2.39 -0.02 3.83 16 41 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -84.35 367.88 3.93 -80.42 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 0.25 Total: 5.72 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 6.15 Total: 28.44 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -4.20 Total: -99.23 kcal Atomic # 8 Polarization: -62.23 SS G_CDS: -0.30 Total: -62.53 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -84.35 3.93 -80.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286429404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.327 kcal (2) G-P(sol) polarization free energy of solvation -84.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds