Wall clock time and date at job start Fri Apr 10 2020 18:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45199 * 109.47036 * 2 1 4 4 C 1.34541 * 116.99816 * 179.97438 * 3 2 1 5 5 O 1.21251 * 120.00482 * 359.97438 * 4 3 2 6 6 C 1.49437 * 119.99845 * 180.02562 * 4 3 2 7 7 O 1.21351 * 119.99868 * 5.95333 * 6 4 3 8 8 N 1.34775 * 120.00143 * 185.95441 * 6 4 3 9 9 C 1.46967 * 120.59550 * 174.63071 * 8 6 4 10 10 C 1.53368 * 108.63681 * 235.24527 * 9 8 6 11 11 N 1.46969 * 108.63385 * 310.57900 * 10 9 8 12 12 C 1.34778 * 120.58908 * 235.19730 * 11 10 9 13 13 O 1.21280 * 120.00157 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99623 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.46964 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47187 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99745 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00377 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99771 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00270 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46726 * 60.00605 * 20 18 16 22 22 H 1.48499 * 109.47088 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47449 * 300.00335 * 20 18 16 24 24 C 1.46964 * 118.81284 * 55.47609 * 11 10 9 25 25 C 1.46964 * 120.59316 * 354.64927 * 8 6 4 26 26 H 1.08995 * 109.47143 * 59.99846 * 1 2 3 27 27 H 1.09003 * 109.46877 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46860 * 299.99619 * 1 2 3 29 29 H 1.09003 * 109.47339 * 239.99777 * 2 1 3 30 30 H 1.09008 * 109.47375 * 120.00305 * 2 1 3 31 31 H 1.09002 * 109.60720 * 115.50304 * 9 8 6 32 32 H 1.08996 * 109.75289 * 355.07976 * 9 8 6 33 33 H 1.09001 * 109.61333 * 190.83024 * 10 9 8 34 34 H 1.09004 * 109.74805 * 70.39997 * 10 9 8 35 35 H 1.09007 * 109.47362 * 300.00234 * 14 12 11 36 36 H 1.09001 * 109.47537 * 59.99867 * 14 12 11 37 37 H 1.08997 * 109.47031 * 299.99266 * 15 14 12 38 38 H 1.08995 * 109.47213 * 59.99951 * 15 14 12 39 39 H 0.96995 * 120.00083 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.61082 * 64.26462 * 24 11 10 41 41 H 1.08995 * 109.60807 * 184.77271 * 24 11 10 42 42 H 1.08999 * 109.61348 * 244.49719 * 25 8 6 43 43 H 1.09005 * 109.61027 * 4.84118 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3477 1.5452 0.0005 5 8 4.0864 0.5837 0.0015 6 6 3.9189 2.9261 0.0011 7 8 3.1848 3.8863 0.1102 8 7 5.2493 3.1052 -0.1194 9 6 5.8144 4.4567 -0.2384 10 6 6.6653 4.5216 -1.5127 11 7 7.5768 3.3688 -1.5280 12 6 8.9071 3.5479 -1.6494 13 8 9.3618 4.6680 -1.7469 14 6 9.8295 2.3563 -1.6641 15 6 11.2760 2.8328 -1.8105 16 6 12.1985 1.6412 -1.8245 17 1 11.7935 0.6437 -1.7382 18 6 13.5594 1.8242 -1.9487 19 7 14.0525 3.0389 -2.0543 20 14 14.7028 0.3473 -1.9654 21 1 14.3541 -0.5358 -3.1073 22 1 16.1068 0.8098 -2.1075 23 1 14.5568 -0.4063 -0.6942 24 6 7.0112 2.0171 -1.4146 25 6 6.1608 1.9525 -0.1346 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 6.4384 4.6699 0.6295 32 1 5.0091 5.1887 -0.2985 33 1 7.2437 5.4455 -1.5197 34 1 6.0186 4.4882 -2.3895 35 1 9.7224 1.8023 -0.7314 36 1 9.5733 1.7087 -2.5027 37 1 11.3834 3.3868 -2.7430 38 1 11.5319 3.4800 -0.9717 39 1 15.0100 3.1677 -2.1413 40 1 6.3866 1.8079 -2.2830 41 1 7.8181 1.2867 -1.3569 42 1 6.8095 1.9875 0.7406 43 1 5.5824 1.0286 -0.1246 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291680484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:36 Heat of formation + Delta-G solvation = -126.562198 kcal Electronic energy + Delta-G solvation = -26042.845815 eV Core-core repulsion = 22089.637551 eV Total energy + Delta-G solvation = -3953.208264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.66639 -40.13447 -39.15866 -37.72480 -36.84894 -34.04386 -33.56119 -32.24554 -31.95116 -30.72508 -28.46573 -26.45406 -25.42262 -24.07756 -23.45372 -22.46498 -21.56502 -20.46772 -18.86349 -18.32949 -17.66784 -17.34989 -16.99363 -16.53753 -15.83634 -15.70871 -15.56697 -15.47469 -15.14993 -14.53911 -14.43929 -14.25313 -13.94855 -13.53417 -13.38007 -13.28128 -12.78592 -12.54777 -12.39104 -12.20209 -12.15981 -12.11508 -11.76442 -11.55692 -11.29974 -11.12770 -11.08390 -10.92957 -10.62313 -9.99519 -9.92760 -9.64900 -9.48108 -9.22948 -9.04847 -8.42206 -8.32542 -5.97648 -4.02379 0.64749 1.37723 2.53623 2.82659 3.12711 3.27480 3.33243 3.38291 3.39863 3.78261 4.39733 4.40290 4.44947 4.56754 4.62147 4.72666 4.91022 4.96493 5.02411 5.12060 5.18405 5.26488 5.29578 5.36779 5.37201 5.53957 5.58470 5.67918 5.74025 5.92176 6.05367 6.14656 6.15974 6.57620 6.63299 6.84318 6.89685 7.39632 7.62174 7.71764 7.82985 8.04667 8.35466 8.64617 9.05603 9.61231 11.13213 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.002613 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.422475 B =10711.579868 C =11790.063856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.057 3.943 3 O -0.326 6.326 4 C 0.467 3.533 5 O -0.471 6.471 6 C 0.530 3.470 7 O -0.495 6.495 8 N -0.572 5.572 9 C 0.097 3.903 10 C 0.098 3.902 11 N -0.630 5.630 12 C 0.514 3.486 13 O -0.530 6.530 14 C -0.129 4.129 15 C 0.037 3.963 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.099 3.901 25 C 0.026 3.974 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.076 -5.849 4.437 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 O -0.240 6.240 4 C 0.307 3.693 5 O -0.359 6.359 6 C 0.312 3.688 7 O -0.370 6.370 8 N -0.308 5.308 9 C -0.025 4.025 10 C -0.026 4.026 11 N -0.366 5.366 12 C 0.305 3.695 13 O -0.405 6.405 14 C -0.169 4.169 15 C 0.000 4.000 16 C -0.566 4.566 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.025 4.025 25 C -0.095 4.095 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -26.853 -4.921 4.420 27.656 hybrid contribution 0.778 -1.022 -0.009 1.285 sum -26.075 -5.944 4.410 27.105 Atomic orbital electron populations 1.21828 0.91956 1.03318 1.03985 1.23295 0.96003 0.79045 1.03317 1.86662 1.21939 1.33292 1.82114 1.23646 0.81860 0.90900 0.72914 1.90359 1.57722 1.43395 1.44469 1.18732 0.83114 0.86942 0.80023 1.90819 1.58425 1.40621 1.47089 1.47905 1.04269 1.09481 1.69097 1.22279 0.98303 0.82500 0.99389 1.21870 0.92324 0.92080 0.96325 1.48349 1.06514 1.06408 1.75370 1.21662 0.81299 0.92472 0.74101 1.90665 1.75203 1.26311 1.48335 1.21899 0.98063 0.94527 1.02374 1.18905 0.86233 0.96377 0.98510 1.21168 0.91626 0.92803 1.51042 0.92642 1.25027 0.98372 0.95701 0.95286 1.69986 1.12851 1.20441 1.49503 0.86646 0.79851 0.82856 0.78530 1.20242 1.21296 1.20242 1.22163 0.98382 0.84924 0.97054 1.23951 0.94378 0.92104 0.99069 0.91166 0.89752 0.91182 0.90408 0.90450 0.89789 0.87575 0.87339 0.91392 0.90138 0.90162 0.95834 0.95828 0.92872 0.91252 0.87433 0.90102 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.29 37.16 0.38 -0.25 16 2 C 0.06 0.34 6.19 37.16 0.23 0.57 16 3 O -0.33 -3.04 10.09 -45.06 -0.45 -3.50 16 4 C 0.47 4.68 7.95 35.40 0.28 4.96 16 5 O -0.47 -4.71 12.80 -19.07 -0.24 -4.95 16 6 C 0.53 6.00 7.75 -11.59 -0.09 5.91 16 7 O -0.50 -6.78 16.40 -7.58 -0.12 -6.90 16 8 N -0.57 -6.11 2.95 -172.73 -0.51 -6.62 16 9 C 0.10 1.03 6.58 -3.60 -0.02 1.01 16 10 C 0.10 1.19 6.59 -3.60 -0.02 1.17 16 11 N -0.63 -8.89 2.94 -172.21 -0.51 -9.39 16 12 C 0.51 9.68 7.70 -10.99 -0.08 9.60 16 13 O -0.53 -12.18 15.39 5.56 0.09 -12.09 16 14 C -0.13 -2.54 3.98 -27.88 -0.11 -2.65 16 15 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 16 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 16 17 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 C 0.10 1.08 6.54 -3.37 -0.02 1.06 16 25 C 0.03 0.26 6.47 -3.37 -0.02 0.24 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.11 1.06 7.03 -51.93 -0.37 0.69 16 33 H 0.11 1.46 6.99 -51.93 -0.36 1.10 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.43 7.73 -51.92 -0.40 1.03 16 36 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 37 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.11 1.13 5.91 -51.93 -0.31 0.82 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.16 1.53 3.67 -57.28 -0.21 1.32 16 LS Contribution 358.33 15.07 5.40 5.40 Total: -1.00 -35.15 358.33 -6.89 -42.04 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -6.24 Total: -2.92 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -0.01 Total: 8.97 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -0.28 Total: -42.50 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.74 Total: -27.44 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.15 -6.89 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291680484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.522 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds