Wall clock time and date at job start Fri Apr 10 2020 18:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00127 * 2 1 4 4 C 1.52997 * 109.47232 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47047 * 65.00285 * 4 3 2 6 6 C 1.46825 * 124.33317 * 269.93502 * 5 4 3 7 7 C 1.54479 * 105.44463 * 196.99402 * 6 5 4 8 8 H 1.09004 * 110.96553 * 92.76780 * 7 6 5 9 9 C 1.50701 * 110.97196 * 216.49107 * 7 6 5 10 10 O 1.21279 * 119.99862 * 356.92123 * 9 7 6 11 11 N 1.34773 * 119.99975 * 176.91284 * 9 7 6 12 12 C 1.47583 * 134.49317 * 180.02562 * 11 9 7 13 13 C 1.53945 * 86.11541 * 204.63646 * 12 11 9 14 14 O 1.42903 * 113.74155 * 90.74233 * 13 12 11 15 15 C 1.50704 * 113.74101 * 221.93630 * 13 12 11 16 16 H 1.07996 * 119.99852 * 358.07848 * 15 13 12 17 17 C 1.37883 * 119.99641 * 178.07674 * 15 13 12 18 18 N 1.31510 * 120.00287 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 119.99749 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47063 * 90.00014 * 19 17 15 21 21 H 1.48503 * 109.47292 * 210.00273 * 19 17 15 22 22 H 1.48506 * 109.47342 * 330.00355 * 19 17 15 23 23 C 1.47935 * 134.50198 * 0.02562 * 11 9 7 24 24 C 1.54626 * 101.80138 * 334.63259 * 7 6 5 25 25 C 1.34423 * 124.34995 * 89.97510 * 5 4 3 26 26 O 1.21274 * 124.94166 * 359.55489 * 25 5 4 27 27 H 1.08996 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.09010 * 109.46807 * 299.99730 * 1 2 3 29 29 H 1.09003 * 109.47466 * 59.99103 * 1 2 3 30 30 H 1.09005 * 109.47037 * 60.00618 * 3 2 1 31 31 H 1.09002 * 109.47544 * 300.00498 * 3 2 1 32 32 H 1.09006 * 109.47629 * 305.00289 * 4 3 2 33 33 H 1.09003 * 109.47726 * 184.99936 * 4 3 2 34 34 H 1.09003 * 110.23625 * 78.01872 * 6 5 4 35 35 H 1.09000 * 110.28462 * 316.00447 * 6 5 4 36 36 H 1.08996 * 113.76772 * 90.33937 * 12 11 9 37 37 H 1.08996 * 113.76651 * 318.93813 * 12 11 9 38 38 H 0.96700 * 114.00311 * 181.92380 * 14 13 12 39 39 H 0.96996 * 120.00241 * 179.97438 * 18 17 15 40 40 H 1.08997 * 113.86757 * 41.09601 * 23 11 9 41 41 H 1.09004 * 113.76551 * 269.60492 * 23 11 9 42 42 H 1.09001 * 110.48638 * 143.44915 * 24 7 6 43 43 H 1.08993 * 110.48657 * 265.96582 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1403 -0.8821 -1.4454 7 6 5.0110 -1.0307 -2.7128 8 1 6.0677 -1.0994 -2.4543 9 6 4.5792 -2.2231 -3.5270 10 8 3.6933 -2.9455 -3.1217 11 7 5.1774 -2.4866 -4.7056 12 6 5.0181 -3.5316 -5.7356 13 6 6.4793 -3.2319 -6.1161 14 8 7.4322 -4.0352 -5.4170 15 6 6.7231 -3.1918 -7.6028 16 1 5.9140 -3.3959 -8.2883 17 6 7.9792 -2.8944 -8.0876 18 7 8.9645 -2.6463 -7.2527 19 14 8.2812 -2.8439 -9.9303 20 1 8.0327 -1.4696 -10.4351 21 1 9.6878 -3.2279 -10.2121 22 1 7.3633 -3.7939 -10.6086 23 6 6.2573 -1.8447 -5.4867 24 6 4.7089 0.2886 -3.4605 25 6 4.2842 1.2452 -2.3681 26 8 4.2286 2.4512 -2.4838 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 3.1697 -1.3544 -1.5971 35 1 4.6456 -1.3241 -0.5867 36 1 4.2999 -3.2750 -6.5143 37 1 4.8663 -4.5309 -5.3277 38 1 8.3525 -3.8299 -5.6314 39 1 9.8482 -2.4374 -7.5937 40 1 7.0942 -1.4984 -4.8803 41 1 5.9022 -1.0938 -6.1925 42 1 5.6039 0.6561 -3.9626 43 1 3.9019 0.1439 -4.1787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331481350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:49 Heat of formation + Delta-G solvation = -122.087773 kcal Electronic energy + Delta-G solvation = -26692.602560 eV Core-core repulsion = 22739.588321 eV Total energy + Delta-G solvation = -3953.014238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 312.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.73840 -39.34210 -38.01520 -37.52749 -36.03034 -34.00734 -33.38305 -32.25412 -29.78196 -28.38897 -27.61830 -26.53086 -25.46574 -25.31246 -23.37987 -22.49851 -19.95873 -19.43989 -18.38568 -17.50240 -17.07409 -16.97483 -16.58964 -15.96808 -15.73315 -15.45067 -15.22545 -14.99050 -14.64381 -14.47044 -14.15426 -13.70260 -13.64302 -13.20041 -12.86252 -12.58755 -12.57371 -12.40717 -12.26382 -12.13224 -11.94837 -11.61250 -11.49472 -11.29271 -11.26237 -11.09134 -11.03231 -10.55775 -10.32939 -10.04735 -9.87557 -9.59716 -9.24872 -8.81136 -8.75713 -8.46558 -7.91390 -6.42521 -4.52709 2.54403 2.84748 3.04797 3.13131 3.21793 3.24688 3.43402 3.56301 4.16451 4.30325 4.44840 4.76300 4.79558 4.84063 4.84933 4.99292 5.00831 5.14833 5.15428 5.22901 5.31266 5.45061 5.48437 5.55843 5.58644 5.67112 5.81707 5.90422 6.06028 6.15212 6.32669 6.42157 6.46772 6.56000 6.62672 6.86898 7.04619 7.06010 7.59933 7.78350 8.11872 8.38847 8.50655 8.63779 9.18642 9.38132 10.64221 Molecular weight = 312.16amu Principal moments of inertia in cm(-1) A = 0.024155 B = 0.003108 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.922696 B = 9008.226792 C = 9502.896580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.042 3.958 4 C 0.130 3.870 5 N -0.613 5.613 6 C 0.124 3.876 7 C -0.118 4.118 8 H 0.114 0.886 9 C 0.540 3.460 10 O -0.558 6.558 11 N -0.628 5.628 12 C 0.113 3.887 13 C 0.239 3.761 14 O -0.572 6.572 15 C -0.538 4.538 16 H 0.071 0.929 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.078 3.922 24 C -0.141 4.141 25 C 0.522 3.478 26 O -0.537 6.537 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.392 0.608 39 H 0.273 0.727 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 6.808 11.797 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.036 4.036 4 C 0.008 3.992 5 N -0.347 5.347 6 C 0.002 3.998 7 C -0.140 4.140 8 H 0.132 0.868 9 C 0.328 3.672 10 O -0.439 6.439 11 N -0.361 5.361 12 C -0.009 4.009 13 C 0.197 3.803 14 O -0.384 6.384 15 C -0.576 4.576 16 H 0.089 0.911 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.045 4.045 24 C -0.181 4.181 25 C 0.310 3.690 26 O -0.415 6.415 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.247 0.753 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.501 6.748 12.465 17.064 hybrid contribution 0.551 0.639 -1.149 1.426 sum -8.950 7.387 11.316 16.209 Atomic orbital electron populations 1.22730 0.81055 1.02886 0.99700 1.87930 1.19688 1.27304 1.95367 1.23044 0.94406 0.85414 1.00751 1.21414 0.92140 0.99721 0.85941 1.48243 1.66347 1.08094 1.11992 1.22001 1.01572 0.79732 0.96536 1.22145 1.02414 0.93774 0.95652 0.86844 1.19551 0.81226 0.85309 0.81116 1.90655 1.31647 1.50663 1.70900 1.50237 1.37495 1.30773 1.17582 1.23469 0.98675 0.91471 0.87295 1.19838 0.85100 0.85249 0.90121 1.86061 1.21199 1.62223 1.68937 1.21496 0.96372 1.48881 0.90862 0.91063 1.25060 0.95669 0.93133 0.99132 1.69387 1.02211 1.47162 1.34989 0.86345 0.77720 0.78621 0.83925 1.20297 1.20922 1.19565 1.24416 0.87016 1.01183 0.91861 1.22286 1.04934 0.93264 0.97616 1.20856 0.76025 0.88050 0.84061 1.90702 1.54681 1.13652 1.82443 0.89484 0.94281 0.94194 0.92312 0.92851 0.89290 0.88411 0.88471 0.90025 0.89557 0.91047 0.75340 0.91666 0.91183 0.89814 0.87085 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.43 10.53 -35.23 -0.37 -4.80 16 3 C 0.04 0.41 6.28 37.16 0.23 0.65 16 4 C 0.13 1.30 6.32 -4.04 -0.03 1.28 16 5 N -0.61 -7.78 2.88 -172.36 -0.50 -8.27 16 6 C 0.12 1.64 6.57 -3.09 -0.02 1.62 16 7 C -0.12 -1.69 3.32 -90.14 -0.30 -1.99 16 8 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 9 C 0.54 9.95 7.29 -10.99 -0.08 9.87 16 10 O -0.56 -11.79 16.26 5.56 0.09 -11.70 16 11 N -0.63 -12.22 3.61 -178.02 -0.64 -12.86 16 12 C 0.11 2.32 8.23 -2.97 -0.02 2.30 16 13 C 0.24 5.41 1.40 -90.85 -0.13 5.28 16 14 O -0.57 -14.01 13.48 -35.23 -0.48 -14.49 16 15 C -0.54 -12.96 8.61 -34.44 -0.30 -13.26 16 16 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 18 N -0.90 -21.92 11.20 55.43 0.62 -21.30 16 19 Si 0.91 18.99 29.54 -169.99 -5.02 13.97 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C 0.08 1.54 7.71 -2.77 -0.02 1.52 16 24 C -0.14 -1.95 6.07 -26.74 -0.16 -2.11 16 25 C 0.52 7.68 8.02 -10.86 -0.09 7.59 16 26 O -0.54 -9.40 17.60 5.56 0.10 -9.30 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.92 7.93 -51.93 -0.41 0.51 16 34 H 0.10 1.48 7.01 -51.93 -0.36 1.12 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.39 9.70 6.60 45.56 0.30 10.00 16 39 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 42 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.11 1.51 7.89 -51.93 -0.41 1.10 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -29.51 363.94 -6.53 -36.04 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.92 Total: 11.43 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 0.11 Total: 15.80 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.52 Total: -42.43 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.66 Total: -40.29 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.51 -6.53 -36.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331481350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.048 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds